Wall clock time and date at job start Mon Mar 30 2020 06:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47326 * 2 1 4 4 N 1.46507 * 109.47269 * 120.00150 * 2 1 3 5 5 C 1.46493 * 120.00012 * 119.92066 * 4 2 1 6 6 C 1.50697 * 109.47584 * 270.00066 * 5 4 2 7 7 H 1.08006 * 119.99886 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00083 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99624 * 180.02562 * 8 6 5 10 10 Si 1.86792 * 120.00294 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47428 * 89.99571 * 10 8 6 12 12 H 1.48497 * 109.47554 * 209.99864 * 10 8 6 13 13 H 1.48506 * 109.46893 * 329.99734 * 10 8 6 14 14 C 1.34773 * 119.99453 * 299.92885 * 4 2 1 15 15 O 1.21275 * 120.00632 * 4.85354 * 14 4 2 16 16 C 1.50708 * 119.99498 * 184.86266 * 14 4 2 17 17 H 1.08996 * 110.01450 * 330.92261 * 16 14 4 18 18 C 1.54267 * 110.02562 * 209.48560 * 16 14 4 19 19 C 1.54892 * 104.19310 * 217.09962 * 18 16 14 20 20 C 1.54891 * 102.74756 * 37.94863 * 19 18 16 21 21 C 1.53867 * 110.03532 * 92.32175 * 16 14 4 22 22 H 1.09000 * 110.03002 * 238.61890 * 21 16 14 23 23 C 1.53002 * 110.03283 * 359.97438 * 21 16 14 24 24 H 1.08990 * 109.47145 * 305.65230 * 1 2 3 25 25 H 1.09002 * 109.46639 * 65.65107 * 1 2 3 26 26 H 1.09001 * 109.46760 * 185.64634 * 1 2 3 27 27 H 1.09004 * 109.47102 * 239.99985 * 2 1 3 28 28 H 1.08999 * 109.46678 * 183.66755 * 3 2 1 29 29 H 1.08994 * 109.46867 * 303.67055 * 3 2 1 30 30 H 1.08998 * 109.46792 * 63.67057 * 3 2 1 31 31 H 1.09005 * 109.47175 * 30.00679 * 5 4 2 32 32 H 1.09006 * 109.47058 * 150.00406 * 5 4 2 33 33 H 0.96996 * 119.99731 * 180.02562 * 9 8 6 34 34 H 1.08998 * 110.49224 * 335.78095 * 18 16 14 35 35 H 1.08999 * 110.48508 * 98.29403 * 18 16 14 36 36 H 1.09002 * 110.75510 * 156.25756 * 19 18 16 37 37 H 1.08993 * 110.75881 * 279.44622 * 19 18 16 38 38 H 1.08993 * 110.48541 * 203.37972 * 20 19 18 39 39 H 1.08996 * 110.48901 * 80.73148 * 20 19 18 40 40 H 1.09004 * 109.47012 * 56.51733 * 23 21 16 41 41 H 1.08999 * 109.47288 * 176.51613 * 23 21 16 42 42 H 1.09002 * 109.47243 * 296.51718 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.8592 -1.8827 1.0617 6 6 1.9866 -3.1105 1.0167 7 1 0.9129 -3.0127 1.0814 8 6 2.5588 -4.3589 0.8931 9 7 1.7972 -5.4303 0.8533 10 14 4.4157 -4.5283 0.7820 11 1 4.9818 -4.6773 2.1467 12 1 4.7561 -5.7251 -0.0285 13 1 4.9857 -3.3169 0.1393 14 6 1.6939 -0.2293 2.4202 15 8 0.9271 0.7034 2.5332 16 6 2.2843 -0.8725 3.6487 17 1 2.4984 -1.9232 3.4533 18 6 1.3061 -0.7432 4.8346 19 6 2.2236 -0.5034 6.0592 20 6 3.3331 0.4099 5.4814 21 6 3.5730 -0.1393 4.0600 22 1 4.4127 -0.8343 4.0641 23 6 3.8520 1.0128 3.0926 24 1 -0.3633 0.5989 0.8350 25 1 -0.3633 0.4237 -0.9363 26 1 -0.3633 -1.0227 0.1011 27 1 1.8933 -0.5139 -0.8900 28 1 3.1280 1.4431 -0.0657 29 1 1.6240 1.9749 -0.8552 30 1 1.7314 1.9370 0.9211 31 1 3.4400 -1.8158 0.1418 32 1 3.5352 -1.9486 1.9143 33 1 2.1998 -6.3085 0.7667 34 1 0.6375 0.1049 4.6869 35 1 0.7334 -1.6622 4.9586 36 1 1.6801 0.0056 6.8553 37 1 2.6415 -1.4436 6.4188 38 1 4.2413 0.3315 6.0789 39 1 2.9919 1.4442 5.4382 40 1 2.9921 1.6821 3.0670 41 1 4.7311 1.5634 3.4273 42 1 4.0316 0.6136 2.0943 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230170858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:04 Heat of formation + Delta-G solvation = -57.648332 kcal Electronic energy + Delta-G solvation = -20642.107523 eV Core-core repulsion = 17814.274737 eV Total energy + Delta-G solvation = -2827.832785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.11224 -37.29428 -35.24680 -33.09576 -31.75257 -30.91125 -28.61130 -27.45245 -26.64015 -24.81158 -22.77615 -21.94999 -20.35545 -19.75789 -17.34340 -16.98902 -16.27207 -15.82330 -15.17222 -14.46476 -14.42046 -13.87775 -13.50771 -13.29547 -12.92065 -12.75855 -12.50141 -12.27550 -12.16709 -11.79117 -11.66286 -11.40834 -11.20917 -10.94231 -10.83808 -10.74187 -10.63634 -10.54319 -10.46798 -10.37541 -10.29996 -10.19218 -9.95372 -9.55710 -8.73854 -8.63614 -7.65723 -6.20349 -4.21487 3.17066 3.25283 3.26484 3.42622 3.89812 4.27016 4.83858 4.92007 5.01174 5.10703 5.35876 5.55478 5.62483 5.65432 5.70303 5.79245 5.85756 5.86779 5.92983 6.02606 6.09123 6.14012 6.16604 6.19740 6.23288 6.33060 6.37281 6.43237 6.49031 6.56428 6.56493 6.65093 6.69731 6.73208 6.81654 6.93811 7.45462 7.52243 8.21542 8.47714 8.86421 9.05996 9.39558 10.92425 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.016141 B = 0.009792 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.320695 B = 2858.833411 C = 3667.151933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 C -0.166 4.166 4 N -0.589 5.589 5 C 0.208 3.792 6 C -0.538 4.538 7 H 0.078 0.922 8 C 0.075 3.925 9 N -0.891 5.891 10 Si 0.869 3.131 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.539 3.461 15 O -0.567 6.567 16 C -0.117 4.117 17 H 0.107 0.893 18 C -0.110 4.110 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.080 4.080 22 H 0.074 0.926 23 C -0.157 4.157 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.266 0.734 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.162 10.350 4.541 12.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 C -0.224 4.224 4 N -0.319 5.319 5 C 0.087 3.913 6 C -0.576 4.576 7 H 0.096 0.904 8 C -0.128 4.128 9 N -0.529 5.529 10 Si 0.696 3.304 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.328 3.672 15 O -0.448 6.448 16 C -0.138 4.138 17 H 0.125 0.875 18 C -0.148 4.148 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.099 4.099 22 H 0.092 0.908 23 C -0.214 4.214 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.785 10.608 4.535 12.142 hybrid contribution 1.050 -0.616 -0.280 1.249 sum 4.835 9.992 4.255 11.888 Atomic orbital electron populations 1.22167 0.95467 1.02823 1.01714 1.20819 0.94525 0.92045 0.88115 1.22205 1.00274 0.97017 1.02863 1.48020 1.50841 1.28476 1.04565 1.19826 0.90860 0.83494 0.97161 1.21419 0.95535 0.89077 1.51601 0.90368 1.24886 0.97826 0.95700 0.94376 1.69896 1.35326 0.98275 1.49406 0.86953 0.86271 0.78342 0.78859 1.19822 1.20918 1.18890 1.20117 0.80035 0.82540 0.84476 1.90499 1.36941 1.30632 1.86705 1.22092 0.95728 1.02301 0.93678 0.87471 1.22310 0.97354 1.02608 0.92558 1.22462 0.96794 0.99375 0.97392 1.22414 0.98335 0.99434 0.95172 1.21603 0.96436 0.96907 0.94936 0.90799 1.22098 1.01662 0.98355 0.99310 0.90742 0.93264 0.92211 0.90125 0.93362 0.92589 0.90769 0.95179 0.95141 0.92423 0.90097 0.91578 0.91865 0.91630 0.92063 0.91545 0.91468 0.93145 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.02 37.16 0.34 -2.66 16 2 C 0.15 2.73 3.28 -67.93 -0.22 2.51 16 3 C -0.17 -2.62 9.17 37.16 0.34 -2.28 16 4 N -0.59 -11.97 1.98 -167.46 -0.33 -12.30 16 5 C 0.21 4.61 3.82 -5.20 -0.02 4.59 16 6 C -0.54 -14.22 9.69 -34.44 -0.33 -14.56 16 7 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 8 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 9 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 10 Si 0.87 19.85 27.47 -169.99 -4.67 15.18 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 14 C 0.54 10.74 3.97 -10.98 -0.04 10.70 16 15 O -0.57 -11.89 11.13 5.56 0.06 -11.82 16 16 C -0.12 -2.12 2.44 -90.65 -0.22 -2.34 16 17 H 0.11 2.16 6.19 -51.93 -0.32 1.84 16 18 C -0.11 -1.82 6.31 -25.07 -0.16 -1.98 16 19 C -0.12 -1.64 6.91 -24.74 -0.17 -1.81 16 20 C -0.12 -1.52 6.36 -25.07 -0.16 -1.68 16 21 C -0.08 -1.22 3.39 -89.50 -0.30 -1.53 16 22 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 23 C -0.16 -2.37 7.89 37.16 0.29 -2.08 16 24 H 0.07 1.45 6.21 -51.93 -0.32 1.12 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.08 1.47 7.79 -51.93 -0.40 1.06 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.29 6.24 -51.93 -0.32 0.96 16 31 H 0.03 0.66 6.98 -51.93 -0.36 0.30 16 32 H 0.03 0.66 5.62 -51.93 -0.29 0.36 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.08 1.42 6.87 -51.93 -0.36 1.06 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 40 H 0.07 1.10 6.73 -51.93 -0.35 0.76 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.96 7.35 -51.93 -0.38 0.58 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -28.52 318.62 -7.46 -35.99 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.34 Total: 4.53 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.76 Total: -11.16 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.44 Total: -37.52 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.06 Total: -11.82 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.67 Total: 15.18 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.52 -7.46 -35.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230170858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.663 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds