Wall clock time and date at job start Mon Mar 30 2020 06:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47326 * 2 1 4 4 N 1.46507 * 109.47269 * 120.00150 * 2 1 3 5 5 C 1.46493 * 120.00012 * 119.92066 * 4 2 1 6 6 C 1.50697 * 109.47584 * 270.00066 * 5 4 2 7 7 H 1.08006 * 119.99886 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00083 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99624 * 180.02562 * 8 6 5 10 10 Si 1.86792 * 120.00294 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47428 * 89.99571 * 10 8 6 12 12 H 1.48497 * 109.47554 * 209.99864 * 10 8 6 13 13 H 1.48506 * 109.46893 * 329.99734 * 10 8 6 14 14 C 1.34773 * 119.99453 * 299.92885 * 4 2 1 15 15 O 1.21275 * 120.00632 * 4.85354 * 14 4 2 16 16 C 1.50708 * 119.99498 * 184.86266 * 14 4 2 17 17 H 1.08996 * 110.01450 * 330.92261 * 16 14 4 18 18 C 1.54267 * 110.02562 * 209.48560 * 16 14 4 19 19 C 1.54892 * 104.19310 * 217.09962 * 18 16 14 20 20 C 1.54891 * 102.74756 * 37.94863 * 19 18 16 21 21 C 1.53867 * 110.03532 * 92.32175 * 16 14 4 22 22 H 1.09000 * 110.03002 * 238.61890 * 21 16 14 23 23 C 1.53002 * 110.03283 * 359.97438 * 21 16 14 24 24 H 1.08990 * 109.47145 * 305.65230 * 1 2 3 25 25 H 1.09002 * 109.46639 * 65.65107 * 1 2 3 26 26 H 1.09001 * 109.46760 * 185.64634 * 1 2 3 27 27 H 1.09004 * 109.47102 * 239.99985 * 2 1 3 28 28 H 1.08999 * 109.46678 * 183.66755 * 3 2 1 29 29 H 1.08994 * 109.46867 * 303.67055 * 3 2 1 30 30 H 1.08998 * 109.46792 * 63.67057 * 3 2 1 31 31 H 1.09005 * 109.47175 * 30.00679 * 5 4 2 32 32 H 1.09006 * 109.47058 * 150.00406 * 5 4 2 33 33 H 0.96996 * 119.99731 * 180.02562 * 9 8 6 34 34 H 1.08998 * 110.49224 * 335.78095 * 18 16 14 35 35 H 1.08999 * 110.48508 * 98.29403 * 18 16 14 36 36 H 1.09002 * 110.75510 * 156.25756 * 19 18 16 37 37 H 1.08993 * 110.75881 * 279.44622 * 19 18 16 38 38 H 1.08993 * 110.48541 * 203.37972 * 20 19 18 39 39 H 1.08996 * 110.48901 * 80.73148 * 20 19 18 40 40 H 1.09004 * 109.47012 * 56.51733 * 23 21 16 41 41 H 1.08999 * 109.47288 * 176.51613 * 23 21 16 42 42 H 1.09002 * 109.47243 * 296.51718 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.8592 -1.8827 1.0617 6 6 1.9866 -3.1105 1.0167 7 1 0.9129 -3.0127 1.0814 8 6 2.5588 -4.3589 0.8931 9 7 1.7972 -5.4303 0.8533 10 14 4.4157 -4.5283 0.7820 11 1 4.9818 -4.6773 2.1467 12 1 4.7561 -5.7251 -0.0285 13 1 4.9857 -3.3169 0.1393 14 6 1.6939 -0.2293 2.4202 15 8 0.9271 0.7034 2.5332 16 6 2.2843 -0.8725 3.6487 17 1 2.4984 -1.9232 3.4533 18 6 1.3061 -0.7432 4.8346 19 6 2.2236 -0.5034 6.0592 20 6 3.3331 0.4099 5.4814 21 6 3.5730 -0.1393 4.0600 22 1 4.4127 -0.8343 4.0641 23 6 3.8520 1.0128 3.0926 24 1 -0.3633 0.5989 0.8350 25 1 -0.3633 0.4237 -0.9363 26 1 -0.3633 -1.0227 0.1011 27 1 1.8933 -0.5139 -0.8900 28 1 3.1280 1.4431 -0.0657 29 1 1.6240 1.9749 -0.8552 30 1 1.7314 1.9370 0.9211 31 1 3.4400 -1.8158 0.1418 32 1 3.5352 -1.9486 1.9143 33 1 2.1998 -6.3085 0.7667 34 1 0.6375 0.1049 4.6869 35 1 0.7334 -1.6622 4.9586 36 1 1.6801 0.0056 6.8553 37 1 2.6415 -1.4436 6.4188 38 1 4.2413 0.3315 6.0789 39 1 2.9919 1.4442 5.4382 40 1 2.9921 1.6821 3.0670 41 1 4.7311 1.5634 3.4273 42 1 4.0316 0.6136 2.0943 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230170858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:03 Heat of formation + Delta-G solvation = -72.873065 kcal Electronic energy + Delta-G solvation = -20642.767717 eV Core-core repulsion = 17814.274737 eV Total energy + Delta-G solvation = -2828.492979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60803 -38.62273 -36.87818 -34.96840 -33.45593 -32.13982 -30.01014 -29.25287 -28.04636 -26.02621 -24.53290 -23.56710 -21.51652 -21.14743 -19.05058 -18.89065 -17.76378 -17.31957 -16.61677 -16.24510 -15.71842 -15.42789 -14.83999 -14.68621 -14.55563 -14.25066 -14.10384 -13.86100 -13.56156 -13.26416 -13.04046 -12.83858 -12.67442 -12.57198 -12.44266 -12.17927 -11.97417 -11.90796 -11.89302 -11.70184 -11.66357 -11.58174 -11.44557 -11.30383 -10.79592 -10.21490 -9.33253 -8.30277 -6.37643 1.38692 1.39979 1.49900 1.85643 2.33505 2.35739 3.03457 3.58741 3.69655 3.72615 4.02065 4.25196 4.26424 4.39054 4.42373 4.44763 4.59916 4.64126 4.66733 4.70789 4.77401 4.80202 4.85124 4.92237 4.94579 4.98047 4.99822 5.01770 5.09542 5.23429 5.26209 5.30606 5.35190 5.39355 5.45731 5.47370 5.55214 5.89978 6.21714 6.65516 6.77454 7.26469 7.48100 8.86373 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.016141 B = 0.009792 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.320695 B = 2858.833411 C = 3667.151933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 C -0.151 4.151 4 N -0.596 5.596 5 C 0.219 3.781 6 C -0.539 4.539 7 H 0.025 0.975 8 C 0.017 3.983 9 N -0.944 5.944 10 Si 0.941 3.059 11 H -0.259 1.259 12 H -0.285 1.285 13 H -0.238 1.238 14 C 0.536 3.464 15 O -0.580 6.580 16 C -0.122 4.122 17 H 0.081 0.919 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.081 4.081 22 H 0.084 0.916 23 C -0.150 4.150 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.025 0.975 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.268 0.732 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.977 11.929 5.062 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 C -0.209 4.209 4 N -0.326 5.326 5 C 0.097 3.903 6 C -0.577 4.577 7 H 0.043 0.957 8 C -0.182 4.182 9 N -0.584 5.584 10 Si 0.763 3.237 11 H -0.184 1.184 12 H -0.211 1.211 13 H -0.161 1.161 14 C 0.326 3.674 15 O -0.462 6.462 16 C -0.144 4.144 17 H 0.100 0.900 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.146 4.146 21 C -0.099 4.099 22 H 0.102 0.898 23 C -0.207 4.207 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.044 0.956 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.592 12.221 5.057 14.778 hybrid contribution 0.000 -1.114 -0.465 1.207 sum 6.592 11.108 4.592 13.709 Atomic orbital electron populations 1.22076 0.95901 1.00532 1.02773 1.21081 0.94295 0.93747 0.87543 1.22069 1.00957 0.94784 1.03108 1.48084 1.50903 1.28064 1.05502 1.19615 0.90399 0.82269 0.98053 1.21552 0.93652 0.91367 1.51143 0.95674 1.25832 1.03628 0.94970 0.93747 1.70068 1.38024 0.99049 1.51239 0.85814 0.79181 0.79101 0.79618 1.18404 1.21117 1.16116 1.20469 0.79689 0.82347 0.84882 1.90486 1.37434 1.31354 1.86929 1.22170 0.97836 1.00937 0.93427 0.90039 1.22313 0.97524 1.01327 0.93959 1.22456 0.96307 1.00244 0.96218 1.22401 0.99299 0.99091 0.93831 1.21689 0.94834 0.97004 0.96414 0.89779 1.22018 1.02044 0.98011 0.98677 0.92119 0.90165 0.95583 0.89884 0.92257 0.90048 0.92406 0.94034 0.93689 0.92324 0.91528 0.92890 0.89976 0.90757 0.89285 0.91426 0.93227 0.90425 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 9.02 71.98 0.65 -5.12 16 2 C 0.14 4.96 3.28 44.99 0.15 5.11 16 3 C -0.15 -4.51 9.17 71.98 0.66 -3.85 16 4 N -0.60 -24.33 1.98 -802.13 -1.59 -25.92 16 5 C 0.22 9.60 3.82 85.63 0.33 9.93 16 6 C -0.54 -29.40 9.69 25.60 0.25 -29.16 16 7 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 8 C 0.02 0.92 5.47 84.65 0.46 1.38 16 9 N -0.94 -56.94 13.96 21.45 0.30 -56.64 16 10 Si 0.94 40.23 27.47 68.60 1.88 42.11 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 12 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 14 C 0.54 21.61 3.97 87.66 0.35 21.96 16 15 O -0.58 -24.75 11.13 -3.01 -0.03 -24.78 16 16 C -0.12 -4.43 2.44 -10.82 -0.03 -4.45 16 17 H 0.08 3.34 6.19 -2.39 -0.01 3.33 16 18 C -0.11 -3.75 6.31 31.67 0.20 -3.55 16 19 C -0.11 -2.82 6.91 31.89 0.22 -2.60 16 20 C -0.11 -2.51 6.36 31.67 0.20 -2.31 16 21 C -0.08 -2.28 3.39 -10.07 -0.03 -2.32 16 22 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 23 C -0.15 -4.18 7.89 71.98 0.57 -3.61 16 24 H 0.06 2.41 6.21 -2.39 -0.01 2.40 16 25 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 2.95 7.79 -2.39 -0.02 2.93 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.93 6.24 -2.39 -0.01 1.92 16 31 H 0.04 1.75 6.98 -2.38 -0.02 1.73 16 32 H 0.05 1.87 5.62 -2.38 -0.01 1.85 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.07 2.38 6.87 -2.39 -0.02 2.36 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.56 7.85 -2.39 -0.02 1.54 16 40 H 0.05 1.55 6.73 -2.38 -0.02 1.54 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 1.41 7.35 -2.39 -0.02 1.39 16 Total: -1.00 -64.46 318.62 5.45 -59.01 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.91 Total: 24.79 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 3.97 Total: -18.58 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -1.29 Total: -82.56 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.03 Total: -24.78 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.88 Total: 42.11 kcal Total: -64.46 5.45 -59.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230170858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.861 kcal (2) G-P(sol) polarization free energy of solvation -64.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds