Wall clock time and date at job start Mon Mar 30 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47306 * 2 1 4 4 N 1.46499 * 109.46860 * 120.00017 * 2 1 3 5 5 C 1.46508 * 119.99534 * 120.23557 * 4 2 1 6 6 C 1.50699 * 109.46953 * 269.99582 * 5 4 2 7 7 H 1.07995 * 120.00553 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99606 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00121 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99877 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47166 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47266 * 119.99934 * 10 8 6 13 13 H 1.48500 * 109.47358 * 240.00020 * 10 8 6 14 14 C 1.34777 * 120.00574 * 300.23424 * 4 2 1 15 15 O 1.21279 * 119.99349 * 3.40640 * 14 4 2 16 16 C 1.50696 * 120.00349 * 183.40396 * 14 4 2 17 17 H 1.09004 * 110.05434 * 312.00089 * 16 14 4 18 18 C 1.53873 * 110.03198 * 73.41829 * 16 14 4 19 19 C 1.54263 * 106.59696 * 119.28394 * 18 16 14 20 20 C 1.54891 * 104.19794 * 23.61064 * 19 18 16 21 21 C 1.54259 * 110.03109 * 190.58671 * 16 14 4 22 22 H 1.08998 * 110.49174 * 335.78011 * 21 16 14 23 23 C 1.53007 * 110.48763 * 98.42779 * 21 16 14 24 24 H 1.09000 * 109.47267 * 297.97579 * 1 2 3 25 25 H 1.09000 * 109.47256 * 57.97056 * 1 2 3 26 26 H 1.08999 * 109.47394 * 177.97242 * 1 2 3 27 27 H 1.09004 * 109.47023 * 239.99848 * 2 1 3 28 28 H 1.09005 * 109.47391 * 183.22141 * 3 2 1 29 29 H 1.08998 * 109.47461 * 303.22873 * 3 2 1 30 30 H 1.09002 * 109.47023 * 63.22513 * 3 2 1 31 31 H 1.08997 * 109.47059 * 30.00472 * 5 4 2 32 32 H 1.09000 * 109.46751 * 150.00120 * 5 4 2 33 33 H 0.97008 * 120.00142 * 179.97438 * 9 8 6 34 34 H 1.08998 * 110.03433 * 238.56900 * 18 16 14 35 35 H 1.08999 * 110.03383 * 359.95155 * 18 16 14 36 36 H 1.09009 * 110.48828 * 142.28651 * 19 18 16 37 37 H 1.08999 * 110.48974 * 264.79650 * 19 18 16 38 38 H 1.09004 * 110.75369 * 80.36749 * 20 19 18 39 39 H 1.08994 * 110.75502 * 203.55592 * 20 19 18 40 40 H 1.08999 * 109.47229 * 59.99797 * 23 21 16 41 41 H 1.08996 * 109.47004 * 180.02562 * 23 21 16 42 42 H 1.08998 * 109.46611 * 299.99746 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8648 -1.8788 1.0617 6 6 1.9976 -3.1103 1.0122 7 1 0.9235 -3.0174 1.0743 8 6 2.5757 -4.3559 0.8877 9 7 3.8838 -4.4692 0.8126 10 14 1.5009 -5.8824 0.8257 11 1 0.0732 -5.4871 0.9291 12 1 1.7262 -6.5946 -0.4577 13 1 1.8489 -6.7791 1.9571 14 6 1.6888 -0.2330 2.4203 15 8 0.9382 0.7130 2.5322 16 6 2.2530 -0.8968 3.6500 17 1 2.1395 -1.9784 3.5762 18 6 3.7393 -0.5325 3.8106 19 6 3.8702 0.1985 5.1628 20 6 2.6495 -0.2929 5.9799 21 6 1.5325 -0.3745 4.9100 22 1 1.1083 0.6124 4.7255 23 6 0.4420 -1.3543 5.3482 24 1 -0.3634 0.4821 0.9076 25 1 -0.3634 0.5450 -0.8712 26 1 -0.3634 -1.0270 -0.0364 27 1 1.8933 -0.5139 -0.8900 28 1 3.1285 1.4430 -0.0578 29 1 1.6302 1.9728 -0.8596 30 1 1.7247 1.9393 0.9175 31 1 3.4476 -1.8076 0.1434 32 1 3.5389 -1.9431 1.9158 33 1 4.2906 -5.3455 0.7254 34 1 4.3472 -1.4372 3.8149 35 1 4.0528 0.1237 2.9987 36 1 4.7993 -0.0813 5.6594 37 1 3.8258 1.2780 5.0187 38 1 2.8436 -1.2749 6.4115 39 1 2.3913 0.4252 6.7581 40 1 0.8914 -2.3216 5.5725 41 1 -0.0560 -0.9694 6.2381 42 1 -0.2866 -1.4694 4.5457 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230170862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:07 Heat of formation + Delta-G solvation = -66.669714 kcal Electronic energy + Delta-G solvation = -20402.004393 eV Core-core repulsion = 17573.780411 eV Total energy + Delta-G solvation = -2828.223982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.82572 -37.27921 -35.16847 -33.13882 -31.61503 -30.82384 -28.46817 -26.89397 -26.57648 -24.81513 -22.95948 -21.87488 -20.44332 -19.40969 -17.81241 -16.68812 -15.98203 -15.30076 -15.01623 -14.55147 -14.29895 -13.81422 -13.44821 -13.27472 -12.77206 -12.68337 -12.56880 -12.24145 -11.92038 -11.74270 -11.45323 -11.38753 -11.06015 -10.92174 -10.87629 -10.73680 -10.65755 -10.42011 -10.34118 -10.30745 -10.16861 -10.13889 -9.88250 -9.64610 -8.63647 -8.49719 -7.62015 -6.16517 -4.23182 3.21598 3.30392 3.34443 3.52540 4.00509 4.35071 4.90057 5.01778 5.12849 5.17953 5.44249 5.64733 5.69292 5.73784 5.77340 5.89939 5.92652 5.94742 6.03164 6.03752 6.13797 6.21490 6.22604 6.26397 6.37062 6.38164 6.44395 6.48870 6.55174 6.63788 6.68703 6.78167 6.85113 6.93464 6.97327 7.25100 7.68129 7.80282 8.09894 8.46230 8.84505 9.15129 9.44833 10.89912 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.009207 C = 0.007192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.344638 B = 3040.294556 C = 3892.187268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 C -0.165 4.165 4 N -0.592 5.592 5 C 0.233 3.767 6 C -0.533 4.533 7 H 0.061 0.939 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.527 3.473 15 O -0.571 6.571 16 C -0.107 4.107 17 H 0.108 0.892 18 C -0.107 4.107 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.085 4.085 22 H 0.090 0.910 23 C -0.140 4.140 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 7.013 5.142 8.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.322 5.322 5 C 0.113 3.887 6 C -0.572 4.572 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.315 3.685 15 O -0.453 6.453 16 C -0.128 4.128 17 H 0.126 0.874 18 C -0.145 4.145 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.103 4.103 22 H 0.108 0.892 23 C -0.198 4.198 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.305 7.340 5.133 9.052 hybrid contribution -0.400 -1.218 -0.319 1.321 sum -1.705 6.122 4.814 7.973 Atomic orbital electron populations 1.22175 0.95826 1.01941 1.02378 1.20798 0.94190 0.92170 0.88453 1.22181 1.00400 0.97063 1.02673 1.48286 1.50422 1.29317 1.04187 1.19528 0.89840 0.80778 0.98535 1.21557 0.93778 0.90861 1.51000 0.92125 1.24930 0.94982 0.99013 0.94898 1.69932 1.09090 1.24301 1.49693 0.86511 0.80815 0.82863 0.77737 1.19687 1.20904 1.20840 1.20358 0.80284 0.82964 0.84849 1.90479 1.37845 1.30090 1.86913 1.21963 0.95424 1.02730 0.92711 0.87373 1.22022 0.94830 1.00634 0.97023 1.22341 0.97960 0.99809 0.95887 1.22551 0.95082 1.00796 0.97191 1.21918 0.94953 1.00505 0.92961 0.89167 1.21759 0.98562 0.98825 1.00613 0.90533 0.93265 0.92688 0.90140 0.93323 0.92741 0.90877 0.95044 0.93703 0.92661 0.90704 0.92039 0.91951 0.92005 0.91578 0.92054 0.92749 0.93246 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.15 37.16 0.34 -2.69 16 2 C 0.15 2.82 3.28 -67.93 -0.22 2.60 16 3 C -0.17 -2.78 9.17 37.16 0.34 -2.44 16 4 N -0.59 -12.53 2.41 -167.47 -0.40 -12.93 16 5 C 0.23 5.52 4.77 -5.19 -0.02 5.50 16 6 C -0.53 -13.86 9.10 -34.44 -0.31 -14.18 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -24.43 13.29 55.43 0.74 -23.70 16 10 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.53 10.90 6.09 -10.99 -0.07 10.84 16 15 O -0.57 -12.40 11.59 5.56 0.06 -12.34 16 16 C -0.11 -1.99 1.95 -90.66 -0.18 -2.17 16 17 H 0.11 2.24 7.00 -51.93 -0.36 1.87 16 18 C -0.11 -1.79 5.05 -25.62 -0.13 -1.92 16 19 C -0.12 -1.70 6.83 -25.07 -0.17 -1.87 16 20 C -0.12 -1.62 6.33 -24.74 -0.16 -1.77 16 21 C -0.08 -1.37 2.86 -88.96 -0.25 -1.63 16 22 H 0.09 1.59 6.77 -51.93 -0.35 1.24 16 23 C -0.14 -2.14 9.12 37.16 0.34 -1.80 16 24 H 0.08 1.52 5.98 -51.93 -0.31 1.21 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.08 1.53 7.80 -51.93 -0.40 1.13 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.35 6.22 -51.93 -0.32 1.02 16 31 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 32 H 0.05 1.08 5.21 -51.93 -0.27 0.81 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.07 1.28 7.79 -51.93 -0.40 0.88 16 35 H 0.06 1.07 7.67 -51.93 -0.40 0.67 16 36 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 325.20 15.07 4.90 4.90 Total: -1.00 -27.42 325.20 -7.74 -35.16 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.43 Total: 3.21 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -0.59 Total: -9.92 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.33 Total: -36.63 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.06 Total: -12.34 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.42 -7.74 -35.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230170862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.512 kcal (2) G-P(sol) polarization free energy of solvation -27.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds