Wall clock time and date at job start Mon Mar 30 2020 06:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46942 * 2 1 4 4 N 1.46494 * 109.46886 * 120.00190 * 2 1 3 5 5 C 1.46501 * 120.00329 * 305.15341 * 4 2 1 6 6 C 1.50699 * 109.47564 * 89.99831 * 5 4 2 7 7 H 1.08007 * 119.99392 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00551 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00324 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46866 * 60.00228 * 10 8 6 12 12 H 1.48505 * 109.47205 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47359 * 300.00443 * 10 8 6 14 14 C 1.34780 * 119.99850 * 125.15291 * 4 2 1 15 15 O 1.21283 * 119.99744 * 185.32428 * 14 4 2 16 16 C 1.50691 * 120.00064 * 5.32748 * 14 4 2 17 17 H 1.09001 * 110.01961 * 30.53863 * 16 14 4 18 18 C 1.54265 * 110.03385 * 151.93226 * 16 14 4 19 19 C 1.54968 * 104.16242 * 142.86050 * 18 16 14 20 20 C 1.54889 * 102.77469 * 322.11350 * 19 18 16 21 21 C 1.53881 * 110.03135 * 269.14613 * 16 14 4 22 22 H 1.09002 * 110.02941 * 121.42922 * 21 16 14 23 23 C 1.52998 * 110.03209 * 0.05221 * 21 16 14 24 24 H 1.09006 * 109.47056 * 300.00131 * 1 2 3 25 25 H 1.09008 * 109.47021 * 59.99709 * 1 2 3 26 26 H 1.09001 * 109.47604 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47053 * 240.00146 * 2 1 3 28 28 H 1.09004 * 109.46712 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47589 * 299.99998 * 3 2 1 30 30 H 1.08998 * 109.47128 * 60.00192 * 3 2 1 31 31 H 1.08996 * 109.47172 * 210.00435 * 5 4 2 32 32 H 1.09008 * 109.46816 * 329.99915 * 5 4 2 33 33 H 0.97000 * 119.99670 * 180.02562 * 9 8 6 34 34 H 1.08997 * 110.48737 * 261.57290 * 18 16 14 35 35 H 1.08994 * 110.48738 * 24.21457 * 18 16 14 36 36 H 1.08997 * 110.76410 * 203.77714 * 19 18 16 37 37 H 1.09003 * 110.87503 * 80.49766 * 19 18 16 38 38 H 1.08999 * 110.48475 * 279.23490 * 20 19 18 39 39 H 1.09002 * 110.48191 * 156.59337 * 20 19 18 40 40 H 1.09003 * 109.47102 * 60.53797 * 23 21 16 41 41 H 1.08994 * 109.47236 * 180.53851 * 23 21 16 42 42 H 1.09004 * 109.46617 * 300.53847 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5737 -0.2594 2.5238 6 6 0.3260 -1.0135 2.9053 7 1 -0.0936 -1.7416 2.2268 8 6 -0.2798 -0.7741 4.1205 9 7 0.2309 0.1128 4.9464 10 14 -1.8267 -1.7084 4.5931 11 1 -1.5375 -3.1647 4.6172 12 1 -2.2780 -1.2704 5.9384 13 1 -2.8949 -1.4323 3.5990 14 6 2.8765 -1.7228 1.0751 15 8 3.2055 -2.3560 2.0558 16 6 3.4273 -2.0900 -0.2786 17 1 3.5015 -1.2011 -0.9049 18 6 4.8154 -2.7452 -0.1244 19 6 4.8376 -3.8473 -1.2136 20 6 3.3869 -4.3890 -1.1823 21 6 2.5194 -3.1346 -0.9514 22 1 2.1537 -2.7528 -1.9046 23 6 1.3411 -3.4722 -0.0357 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 2.3580 -0.4619 3.2531 32 1 1.3611 0.8096 2.5063 33 1 -0.1951 0.2810 5.8015 34 1 5.6041 -2.0146 -0.3036 35 1 4.9210 -3.1864 0.8667 36 1 5.5487 -4.6318 -0.9550 37 1 5.0707 -3.4233 -2.1904 38 1 3.2613 -5.0960 -0.3623 39 1 3.1342 -4.8578 -2.1334 40 1 0.7579 -2.5709 0.1533 41 1 0.7097 -4.2193 -0.5166 42 1 1.7163 -3.8671 0.9085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230170871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:16 Heat of formation + Delta-G solvation = -58.169520 kcal Electronic energy + Delta-G solvation = -20539.201634 eV Core-core repulsion = 17711.346248 eV Total energy + Delta-G solvation = -2827.855386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.03746 -37.13567 -35.73912 -32.78119 -31.05585 -30.69965 -29.33479 -27.09539 -26.56190 -24.77058 -23.05525 -21.50751 -20.55676 -19.74593 -17.46733 -16.73977 -16.41911 -15.62195 -15.15232 -14.54736 -14.13216 -13.80724 -13.62452 -13.21679 -13.19813 -12.70854 -12.33891 -12.01811 -11.76863 -11.60447 -11.59775 -11.33273 -11.12066 -10.96174 -10.84046 -10.79636 -10.67552 -10.57002 -10.45266 -10.42717 -10.27575 -10.13164 -9.92407 -9.48867 -8.67227 -8.37005 -7.54342 -5.98245 -4.00893 3.33929 3.38678 3.41175 3.53994 4.00344 4.49054 4.70700 4.80309 4.90676 5.27129 5.34616 5.39286 5.47311 5.57266 5.58697 5.66966 5.73467 5.74937 5.79444 5.83969 6.01732 6.03149 6.07339 6.16568 6.25882 6.27509 6.31803 6.38403 6.39698 6.53119 6.60315 6.66203 6.80255 7.05533 7.19415 7.52724 7.67135 7.99269 8.31891 8.56358 8.98580 9.23071 9.63081 11.09914 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.007476 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.102952 B = 3744.331247 C = 4105.850240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 C -0.163 4.163 4 N -0.595 5.595 5 C 0.248 3.752 6 C -0.514 4.514 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.519 3.481 15 O -0.541 6.541 16 C -0.116 4.116 17 H 0.084 0.916 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.077 4.077 22 H 0.071 0.929 23 C -0.164 4.164 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 -2.300 -14.708 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 C -0.221 4.221 4 N -0.326 5.326 5 C 0.129 3.871 6 C -0.553 4.553 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.306 3.694 15 O -0.419 6.419 16 C -0.138 4.138 17 H 0.102 0.898 18 C -0.151 4.151 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.096 4.096 22 H 0.089 0.911 23 C -0.221 4.221 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.882 -2.520 -13.975 15.016 hybrid contribution -1.011 -0.344 0.310 1.112 sum 3.870 -2.864 -13.666 14.489 Atomic orbital electron populations 1.22152 0.94612 1.02488 1.02096 1.20996 0.95138 0.92747 0.88372 1.22184 1.00784 0.96861 1.02276 1.48322 1.44090 1.31705 1.08499 1.19175 0.95341 0.95021 0.77560 1.21401 1.09461 1.22252 1.02143 0.92394 1.24914 0.97652 0.95390 0.96240 1.69924 1.40334 1.33786 1.09634 0.86651 0.83309 0.80473 0.77537 1.20287 1.21320 1.20343 1.20094 0.79192 0.80149 0.89999 1.90640 1.60533 1.50890 1.39851 1.22120 0.96639 0.99271 0.95763 0.89794 1.22358 0.94579 0.97412 1.00730 1.22473 0.96787 0.98099 0.98604 1.22446 0.94600 0.97273 1.01280 1.21598 0.95373 0.94489 0.98145 0.91073 1.22185 0.97481 1.02532 0.99901 0.90197 0.93423 0.92413 0.90604 0.93039 0.92409 0.91515 0.94408 0.95084 0.92846 0.91969 0.89526 0.91723 0.91874 0.91257 0.91990 0.90946 0.93288 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.27 37.16 0.31 -2.30 16 2 C 0.13 2.18 2.41 -67.94 -0.16 2.01 16 3 C -0.16 -2.40 9.26 37.16 0.34 -2.06 16 4 N -0.59 -12.39 1.94 -167.48 -0.32 -12.72 16 5 C 0.25 6.39 4.41 -5.19 -0.02 6.37 16 6 C -0.51 -14.19 7.84 -34.44 -0.27 -14.46 16 7 H 0.06 1.59 7.50 -52.48 -0.39 1.20 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 10 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.52 10.76 4.57 -10.99 -0.05 10.71 16 15 O -0.54 -13.63 14.61 5.55 0.08 -13.55 16 16 C -0.12 -1.81 2.37 -90.65 -0.21 -2.03 16 17 H 0.08 1.15 6.46 -51.93 -0.34 0.82 16 18 C -0.11 -1.62 6.32 -25.03 -0.16 -1.78 16 19 C -0.12 -1.42 6.91 -24.70 -0.17 -1.59 16 20 C -0.12 -1.47 6.36 -25.08 -0.16 -1.63 16 21 C -0.08 -1.08 3.20 -89.50 -0.29 -1.37 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 23 C -0.16 -2.75 7.89 37.16 0.29 -2.46 16 24 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16 25 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.06 1.01 6.28 -51.93 -0.33 0.69 16 27 H 0.08 1.08 5.35 -51.93 -0.28 0.80 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.11 6.87 -51.93 -0.36 0.75 16 31 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 32 H 0.03 0.81 6.70 -51.92 -0.35 0.47 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.48 6.85 -51.93 -0.36 1.12 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.33 4.67 -51.93 -0.24 1.09 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.38 6.98 -51.93 -0.36 1.02 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -31.17 317.50 -7.49 -38.66 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.10 Total: 0.81 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.65 Total: -9.00 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.41 Total: -38.63 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.17 -7.49 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230170871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.514 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds