Wall clock time and date at job start Mon Mar 30 2020 06:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46942 * 2 1 4 4 N 1.46494 * 109.46886 * 120.00190 * 2 1 3 5 5 C 1.46501 * 120.00329 * 305.15341 * 4 2 1 6 6 C 1.50699 * 109.47564 * 89.99831 * 5 4 2 7 7 H 1.08007 * 119.99392 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00551 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00324 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46866 * 60.00228 * 10 8 6 12 12 H 1.48505 * 109.47205 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47359 * 300.00443 * 10 8 6 14 14 C 1.34780 * 119.99850 * 125.15291 * 4 2 1 15 15 O 1.21283 * 119.99744 * 185.32428 * 14 4 2 16 16 C 1.50691 * 120.00064 * 5.32748 * 14 4 2 17 17 H 1.09001 * 110.01961 * 30.53863 * 16 14 4 18 18 C 1.54265 * 110.03385 * 151.93226 * 16 14 4 19 19 C 1.54968 * 104.16242 * 142.86050 * 18 16 14 20 20 C 1.54889 * 102.77469 * 322.11350 * 19 18 16 21 21 C 1.53881 * 110.03135 * 269.14613 * 16 14 4 22 22 H 1.09002 * 110.02941 * 121.42922 * 21 16 14 23 23 C 1.52998 * 110.03209 * 0.05221 * 21 16 14 24 24 H 1.09006 * 109.47056 * 300.00131 * 1 2 3 25 25 H 1.09008 * 109.47021 * 59.99709 * 1 2 3 26 26 H 1.09001 * 109.47604 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47053 * 240.00146 * 2 1 3 28 28 H 1.09004 * 109.46712 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47589 * 299.99998 * 3 2 1 30 30 H 1.08998 * 109.47128 * 60.00192 * 3 2 1 31 31 H 1.08996 * 109.47172 * 210.00435 * 5 4 2 32 32 H 1.09008 * 109.46816 * 329.99915 * 5 4 2 33 33 H 0.97000 * 119.99670 * 180.02562 * 9 8 6 34 34 H 1.08997 * 110.48737 * 261.57290 * 18 16 14 35 35 H 1.08994 * 110.48738 * 24.21457 * 18 16 14 36 36 H 1.08997 * 110.76410 * 203.77714 * 19 18 16 37 37 H 1.09003 * 110.87503 * 80.49766 * 19 18 16 38 38 H 1.08999 * 110.48475 * 279.23490 * 20 19 18 39 39 H 1.09002 * 110.48191 * 156.59337 * 20 19 18 40 40 H 1.09003 * 109.47102 * 60.53797 * 23 21 16 41 41 H 1.08994 * 109.47236 * 180.53851 * 23 21 16 42 42 H 1.09004 * 109.46617 * 300.53847 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5737 -0.2594 2.5238 6 6 0.3260 -1.0135 2.9053 7 1 -0.0936 -1.7416 2.2268 8 6 -0.2798 -0.7741 4.1205 9 7 0.2309 0.1128 4.9464 10 14 -1.8267 -1.7084 4.5931 11 1 -1.5375 -3.1647 4.6172 12 1 -2.2780 -1.2704 5.9384 13 1 -2.8949 -1.4323 3.5990 14 6 2.8765 -1.7228 1.0751 15 8 3.2055 -2.3560 2.0558 16 6 3.4273 -2.0900 -0.2786 17 1 3.5015 -1.2011 -0.9049 18 6 4.8154 -2.7452 -0.1244 19 6 4.8376 -3.8473 -1.2136 20 6 3.3869 -4.3890 -1.1823 21 6 2.5194 -3.1346 -0.9514 22 1 2.1537 -2.7528 -1.9046 23 6 1.3411 -3.4722 -0.0357 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 2.3580 -0.4619 3.2531 32 1 1.3611 0.8096 2.5063 33 1 -0.1951 0.2810 5.8015 34 1 5.6041 -2.0146 -0.3036 35 1 4.9210 -3.1864 0.8667 36 1 5.5487 -4.6318 -0.9550 37 1 5.0707 -3.4233 -2.1904 38 1 3.2613 -5.0960 -0.3623 39 1 3.1342 -4.8578 -2.1334 40 1 0.7579 -2.5709 0.1533 41 1 0.7097 -4.2193 -0.5166 42 1 1.7163 -3.8671 0.9085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230170871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:16 Heat of formation + Delta-G solvation = -76.659416 kcal Electronic energy + Delta-G solvation = -20540.003416 eV Core-core repulsion = 17711.346248 eV Total energy + Delta-G solvation = -2828.657168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51545 -38.45961 -37.36727 -34.90676 -32.40179 -32.15348 -30.75564 -28.82949 -27.91705 -26.04274 -25.00054 -22.97775 -21.62971 -21.10801 -18.98273 -18.59291 -18.12397 -16.95593 -16.81878 -16.25851 -15.66022 -15.28931 -14.96018 -14.55277 -14.45426 -14.36248 -13.87404 -13.55340 -13.30707 -13.23368 -13.04439 -12.83215 -12.77136 -12.60522 -12.45160 -12.19025 -12.06369 -11.87863 -11.82228 -11.69649 -11.55147 -11.51438 -11.41812 -11.27640 -10.60463 -10.35524 -9.34010 -8.18003 -6.29103 1.33553 1.37586 1.44301 1.93400 2.32998 2.48701 3.11339 3.54657 3.68990 3.74293 3.97390 4.19990 4.30435 4.38188 4.40634 4.45543 4.59068 4.62557 4.68073 4.79495 4.84874 4.87699 4.95991 4.99593 5.02977 5.05998 5.11327 5.13848 5.23069 5.27353 5.30989 5.33039 5.45384 5.47166 5.56767 5.66057 5.67952 5.95400 6.14183 6.77530 6.92569 7.34726 7.60869 8.89041 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.007476 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.102952 B = 3744.331247 C = 4105.850240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 C -0.158 4.158 4 N -0.598 5.598 5 C 0.268 3.732 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.957 3.043 11 H -0.281 1.281 12 H -0.281 1.281 13 H -0.260 1.260 14 C 0.510 3.490 15 O -0.600 6.600 16 C -0.109 4.109 17 H 0.115 0.885 18 C -0.118 4.118 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.074 4.074 22 H 0.110 0.890 23 C -0.160 4.160 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.036 0.964 31 H -0.015 1.015 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 -2.591 -18.686 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.216 4.216 4 N -0.328 5.328 5 C 0.146 3.854 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.782 3.218 11 H -0.207 1.207 12 H -0.206 1.206 13 H -0.184 1.184 14 C 0.300 3.700 15 O -0.482 6.482 16 C -0.131 4.131 17 H 0.133 0.867 18 C -0.156 4.156 19 C -0.148 4.148 20 C -0.155 4.155 21 C -0.092 4.092 22 H 0.128 0.872 23 C -0.217 4.217 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.131 0.869 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.003 0.997 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.537 -2.793 -18.003 18.775 hybrid contribution -0.882 -0.241 1.563 1.810 sum 3.655 -3.035 -16.440 17.113 Atomic orbital electron populations 1.22090 0.94755 1.01733 1.02246 1.21394 0.95102 0.93823 0.87430 1.22152 1.01180 0.95516 1.02728 1.48351 1.44192 1.32202 1.08077 1.18562 0.93047 0.94232 0.79535 1.21617 1.09865 1.21913 1.02226 0.92762 1.25781 1.00955 0.96314 0.96291 1.70051 1.41906 1.35294 1.10056 0.85633 0.79856 0.78540 0.77806 1.20708 1.20590 1.18433 1.21152 0.78236 0.78964 0.91693 1.90608 1.62373 1.52739 1.42463 1.22224 0.97269 1.01138 0.92423 0.86687 1.22387 0.94407 0.98787 0.99980 1.22462 0.96374 0.97154 0.98778 1.22457 0.94883 0.96166 1.02008 1.21709 0.94037 0.94935 0.98537 0.87183 1.22110 0.98821 1.01978 0.98793 0.93993 0.89221 0.93602 0.86935 0.92408 0.88472 0.94477 0.99651 0.96064 0.92740 0.90270 0.93476 0.90945 0.88708 0.93591 0.88805 0.92859 0.91118 0.95805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 8.27 71.98 0.60 -4.22 16 2 C 0.13 3.89 2.41 44.99 0.11 4.00 16 3 C -0.16 -4.32 9.26 71.98 0.67 -3.66 16 4 N -0.60 -25.53 1.94 -802.16 -1.56 -27.09 16 5 C 0.27 14.66 4.41 85.63 0.38 15.04 16 6 C -0.52 -29.93 7.84 25.60 0.20 -29.73 16 7 H 0.05 3.11 7.50 -2.91 -0.02 3.09 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 10 Si 0.96 46.11 29.54 68.60 2.03 48.13 16 11 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 14 C 0.51 21.71 4.57 87.65 0.40 22.11 16 15 O -0.60 -32.37 14.61 -3.04 -0.04 -32.41 16 16 C -0.11 -3.18 2.37 -10.82 -0.03 -3.20 16 17 H 0.12 2.63 6.46 -2.39 -0.02 2.62 16 18 C -0.12 -3.21 6.32 31.70 0.20 -3.01 16 19 C -0.11 -2.15 6.91 31.91 0.22 -1.93 16 20 C -0.12 -2.54 6.36 31.67 0.20 -2.34 16 21 C -0.07 -1.83 3.20 -10.07 -0.03 -1.87 16 22 H 0.11 1.99 8.14 -2.39 -0.02 1.98 16 23 C -0.16 -5.27 7.89 71.98 0.57 -4.70 16 24 H 0.04 1.65 6.95 -2.38 -0.02 1.64 16 25 H 0.09 2.09 8.14 -2.38 -0.02 2.08 16 26 H 0.04 1.56 6.28 -2.39 -0.01 1.54 16 27 H 0.11 2.71 5.35 -2.39 -0.01 2.69 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.23 6.87 -2.39 -0.02 1.21 16 31 H -0.01 -0.94 7.50 -2.39 -0.02 -0.96 16 32 H 0.02 1.20 6.70 -2.38 -0.02 1.18 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.67 6.85 -2.39 -0.02 1.65 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.20 7.85 -2.39 -0.02 1.18 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.94 4.67 -2.39 -0.01 1.93 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.02 0.97 6.98 -2.38 -0.02 0.95 16 Total: -1.00 -74.94 317.50 5.64 -69.30 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.98 Total: 12.27 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 3.94 Total: -12.78 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -1.27 Total: -84.52 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.04 Total: -32.41 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -74.94 5.64 -69.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230170871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.359 kcal (2) G-P(sol) polarization free energy of solvation -74.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds