Wall clock time and date at job start Mon Mar 30 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 N 1.46507 * 109.46971 * 184.66062 * 3 2 1 5 5 C 1.37102 * 120.00132 * 263.33285 * 4 3 2 6 6 H 1.07997 * 119.99507 * 141.71293 * 5 4 3 7 7 C 1.38952 * 119.99956 * 321.71088 * 5 4 3 8 8 N 1.31407 * 119.99801 * 168.16122 * 7 5 4 9 9 Si 1.86804 * 119.99877 * 348.15893 * 7 5 4 10 10 H 1.48509 * 109.46885 * 91.35141 * 9 7 5 11 11 H 1.48496 * 109.46941 * 211.35072 * 9 7 5 12 12 H 1.48500 * 109.47333 * 331.35097 * 9 7 5 13 13 C 1.34786 * 119.99795 * 83.33174 * 4 3 2 14 14 O 1.21288 * 119.99804 * 5.72204 * 13 4 3 15 15 C 1.50693 * 119.99696 * 185.72107 * 13 4 3 16 16 C 1.52997 * 109.47670 * 306.26348 * 15 13 4 17 17 C 1.53006 * 109.47067 * 66.26431 * 15 13 4 18 18 C 1.52997 * 109.47101 * 60.00008 * 17 15 13 19 19 C 1.52992 * 109.47524 * 59.99825 * 18 17 15 20 20 C 1.53001 * 109.47402 * 300.00107 * 19 18 17 21 21 C 1.52997 * 109.46868 * 59.99492 * 20 19 18 22 22 H 1.09003 * 109.47091 * 300.00499 * 1 2 3 23 23 H 1.09003 * 109.46992 * 59.99725 * 1 2 3 24 24 H 1.08994 * 109.46854 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46949 * 240.00167 * 2 1 3 26 26 H 1.08995 * 109.46881 * 119.99664 * 2 1 3 27 27 H 1.08997 * 109.47292 * 64.66496 * 3 2 1 28 28 H 1.09000 * 109.47367 * 304.65639 * 3 2 1 29 29 H 0.96999 * 119.99577 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.47430 * 71.58392 * 16 15 13 31 31 H 1.08992 * 109.47348 * 191.59213 * 16 15 13 32 32 H 1.09012 * 109.46766 * 311.58892 * 16 15 13 33 33 H 1.09001 * 109.46757 * 179.97438 * 17 15 13 34 34 H 1.09000 * 109.46934 * 299.99533 * 17 15 13 35 35 H 1.09005 * 109.46820 * 299.99565 * 18 17 15 36 36 H 1.09002 * 109.47035 * 180.02562 * 18 17 15 37 37 H 1.09005 * 109.47433 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.47285 * 60.00024 * 19 18 17 39 39 H 1.09005 * 109.46833 * 300.00194 * 20 19 18 40 40 H 1.08993 * 109.47631 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.47035 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47298 * 60.00610 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5007 1.4441 -0.1122 5 6 4.2747 1.5507 1.0144 6 1 5.1900 0.9834 1.0962 7 6 3.8815 2.3886 2.0507 8 7 4.4857 2.3208 3.2157 9 14 2.4941 3.6115 1.7878 10 1 1.2035 2.9863 2.1738 11 1 2.7305 4.8156 2.6241 12 1 2.4452 4.0046 0.3566 13 6 4.0837 1.3407 -1.3231 14 8 3.4028 1.3509 -2.3268 15 6 5.5813 1.2124 -1.4298 16 6 6.2472 2.3605 -0.6686 17 6 6.0230 -0.1228 -0.8272 18 6 5.3573 -1.2710 -1.5883 19 6 5.7704 -1.2143 -3.0604 20 6 5.3287 0.1209 -3.6630 21 6 5.9944 1.2690 -2.9018 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7465 1.9317 0.9288 28 1 1.6101 1.9799 -0.8453 29 1 4.2114 2.9060 3.9390 30 1 6.1242 2.2055 0.4033 31 1 7.3092 2.3902 -0.9120 32 1 5.7823 3.3041 -0.9550 33 1 7.1063 -0.2158 -0.9047 34 1 5.7287 -0.1632 0.2216 35 1 4.2740 -1.1782 -1.5111 36 1 5.6717 -2.2222 -1.1587 37 1 5.2965 -2.0326 -3.6026 38 1 6.8538 -1.3071 -3.1376 39 1 4.2454 0.2137 -3.5858 40 1 5.6234 0.1615 -4.7116 41 1 5.6795 2.2203 -3.3309 42 1 7.0778 1.1763 -2.9790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233034159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:15 Heat of formation + Delta-G solvation = -43.568213 kcal Electronic energy + Delta-G solvation = -21038.889245 eV Core-core repulsion = 18211.667019 eV Total energy + Delta-G solvation = -2827.222226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -40.07501 -36.94719 -35.15227 -33.33196 -32.06213 -31.34307 -30.08304 -26.14846 -25.61568 -24.96576 -22.13909 -21.75187 -21.00389 -19.91945 -18.40693 -17.00468 -15.81740 -15.23773 -14.75028 -14.36382 -14.09044 -13.86288 -13.50255 -13.37868 -13.02865 -12.55822 -12.51940 -12.26300 -11.86982 -11.69728 -11.56356 -11.38012 -11.26439 -11.05614 -10.97736 -10.83139 -10.74307 -10.44852 -10.27011 -10.09376 -9.99227 -9.62826 -9.46023 -9.20737 -8.95386 -8.22205 -7.70594 -6.42342 -4.05854 3.04062 3.21734 3.27766 3.78332 4.11867 4.41316 4.95228 5.27358 5.34333 5.35246 5.54441 5.60613 5.68459 5.82007 5.82666 5.96970 6.00655 6.05785 6.07664 6.12376 6.20659 6.27792 6.35053 6.35616 6.40315 6.46501 6.55027 6.63229 6.64212 6.74611 6.74990 6.79274 6.86784 6.88254 7.00952 7.16632 7.34640 7.46883 8.13223 8.27623 8.96875 9.38677 9.73074 10.66302 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.010198 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.672517 B = 2744.955697 C = 3360.525185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.100 3.900 4 N -0.469 5.469 5 C -0.338 4.338 6 H 0.122 0.878 7 C 0.060 3.940 8 N -0.871 5.871 9 Si 0.885 3.115 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.264 1.264 13 C 0.500 3.500 14 O -0.592 6.592 15 C -0.057 4.057 16 C -0.149 4.149 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.136 4.136 21 C -0.088 4.088 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.274 0.726 30 H 0.107 0.893 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -3.783 -6.021 7.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.023 4.023 4 N -0.188 5.188 5 C -0.465 4.465 6 H 0.139 0.861 7 C -0.145 4.145 8 N -0.507 5.507 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.221 1.221 12 H -0.189 1.189 13 C 0.290 3.710 14 O -0.477 6.477 15 C -0.060 4.060 16 C -0.206 4.206 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.173 4.173 21 C -0.126 4.126 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.012 -3.692 -6.290 7.294 hybrid contribution -0.692 0.719 0.179 1.014 sum -0.680 -2.973 -6.111 6.830 Atomic orbital electron populations 1.21714 0.96421 1.01048 1.01377 1.21773 0.94801 0.97999 1.02331 1.21686 0.83432 0.96542 1.00662 1.43757 1.03744 1.65275 1.06073 1.19410 1.07780 1.25939 0.93321 0.86100 1.25336 0.97452 0.96631 0.95125 1.69651 1.41587 1.37772 1.01731 0.86869 0.81743 0.80882 0.79073 1.20361 1.22072 1.18869 1.20264 0.89543 0.78599 0.82601 1.90407 1.65584 1.55655 1.36046 1.20395 0.93019 0.96870 0.95692 1.22155 0.97486 0.96288 1.04688 1.21705 0.99398 0.92575 1.01157 1.21523 1.01006 0.97959 0.95090 1.21498 0.99858 0.97631 0.96126 1.21884 1.04640 0.93639 0.97153 1.21329 0.98534 0.98808 0.93961 0.93090 0.92980 0.93022 0.91964 0.91518 0.91825 0.91719 0.91559 0.87456 0.94278 0.93707 0.92353 0.89362 0.92028 0.92798 0.93136 0.93055 0.88022 0.93757 0.92416 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 37.16 0.37 -1.97 16 2 C -0.13 -2.50 6.20 -26.73 -0.17 -2.66 16 3 C 0.10 2.19 3.74 -4.04 -0.02 2.18 16 4 N -0.47 -10.90 2.25 -114.81 -0.26 -11.16 16 5 C -0.34 -8.26 6.63 -14.93 -0.10 -8.36 16 6 H 0.12 3.01 3.92 -52.49 -0.21 2.81 16 7 C 0.06 1.54 5.43 -17.47 -0.09 1.45 16 8 N -0.87 -23.25 13.96 55.50 0.77 -22.48 16 9 Si 0.88 20.64 24.60 -169.99 -4.18 16.46 16 10 H -0.28 -6.21 6.67 56.52 0.38 -5.84 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.26 -6.32 6.95 56.52 0.39 -5.93 16 13 C 0.50 11.26 4.95 -10.98 -0.05 11.20 16 14 O -0.59 -14.19 13.11 5.55 0.07 -14.12 16 15 C -0.06 -1.11 0.50 -155.66 -0.08 -1.18 16 16 C -0.15 -2.92 7.81 37.16 0.29 -2.63 16 17 C -0.11 -2.00 4.54 -26.73 -0.12 -2.12 16 18 C -0.12 -1.99 5.70 -26.74 -0.15 -2.15 16 19 C -0.11 -1.75 5.92 -26.73 -0.16 -1.91 16 20 C -0.14 -2.32 5.63 -26.73 -0.15 -2.47 16 21 C -0.09 -1.56 4.38 -26.73 -0.12 -1.68 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.06 1.45 2.83 -51.93 -0.15 1.30 16 28 H 0.06 1.45 7.55 -51.93 -0.39 1.05 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.11 2.34 4.79 -51.93 -0.25 2.09 16 31 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.04 0.90 8.09 -51.92 -0.42 0.48 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.76 5.20 -51.93 -0.27 1.49 16 35 H 0.06 1.17 7.22 -51.93 -0.37 0.80 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 2.03 5.29 -51.93 -0.27 1.76 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -26.57 305.00 -6.54 -33.11 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.00 Total: 5.90 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -0.55 Total: -12.30 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.52 Total: -33.64 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.07 Total: -14.12 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.18 Total: 16.46 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.57 -6.54 -33.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233034159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.462 kcal (2) G-P(sol) polarization free energy of solvation -26.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds