Wall clock time and date at job start Mon Mar 30 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 N 1.46507 * 109.46971 * 184.66062 * 3 2 1 5 5 C 1.37102 * 120.00132 * 263.33285 * 4 3 2 6 6 H 1.07997 * 119.99507 * 141.71293 * 5 4 3 7 7 C 1.38952 * 119.99956 * 321.71088 * 5 4 3 8 8 N 1.31407 * 119.99801 * 168.16122 * 7 5 4 9 9 Si 1.86804 * 119.99877 * 348.15893 * 7 5 4 10 10 H 1.48509 * 109.46885 * 91.35141 * 9 7 5 11 11 H 1.48496 * 109.46941 * 211.35072 * 9 7 5 12 12 H 1.48500 * 109.47333 * 331.35097 * 9 7 5 13 13 C 1.34786 * 119.99795 * 83.33174 * 4 3 2 14 14 O 1.21288 * 119.99804 * 5.72204 * 13 4 3 15 15 C 1.50693 * 119.99696 * 185.72107 * 13 4 3 16 16 C 1.52997 * 109.47670 * 306.26348 * 15 13 4 17 17 C 1.53006 * 109.47067 * 66.26431 * 15 13 4 18 18 C 1.52997 * 109.47101 * 60.00008 * 17 15 13 19 19 C 1.52992 * 109.47524 * 59.99825 * 18 17 15 20 20 C 1.53001 * 109.47402 * 300.00107 * 19 18 17 21 21 C 1.52997 * 109.46868 * 59.99492 * 20 19 18 22 22 H 1.09003 * 109.47091 * 300.00499 * 1 2 3 23 23 H 1.09003 * 109.46992 * 59.99725 * 1 2 3 24 24 H 1.08994 * 109.46854 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46949 * 240.00167 * 2 1 3 26 26 H 1.08995 * 109.46881 * 119.99664 * 2 1 3 27 27 H 1.08997 * 109.47292 * 64.66496 * 3 2 1 28 28 H 1.09000 * 109.47367 * 304.65639 * 3 2 1 29 29 H 0.96999 * 119.99577 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.47430 * 71.58392 * 16 15 13 31 31 H 1.08992 * 109.47348 * 191.59213 * 16 15 13 32 32 H 1.09012 * 109.46766 * 311.58892 * 16 15 13 33 33 H 1.09001 * 109.46757 * 179.97438 * 17 15 13 34 34 H 1.09000 * 109.46934 * 299.99533 * 17 15 13 35 35 H 1.09005 * 109.46820 * 299.99565 * 18 17 15 36 36 H 1.09002 * 109.47035 * 180.02562 * 18 17 15 37 37 H 1.09005 * 109.47433 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.47285 * 60.00024 * 19 18 17 39 39 H 1.09005 * 109.46833 * 300.00194 * 20 19 18 40 40 H 1.08993 * 109.47631 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.47035 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47298 * 60.00610 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5007 1.4441 -0.1122 5 6 4.2747 1.5507 1.0144 6 1 5.1900 0.9834 1.0962 7 6 3.8815 2.3886 2.0507 8 7 4.4857 2.3208 3.2157 9 14 2.4941 3.6115 1.7878 10 1 1.2035 2.9863 2.1738 11 1 2.7305 4.8156 2.6241 12 1 2.4452 4.0046 0.3566 13 6 4.0837 1.3407 -1.3231 14 8 3.4028 1.3509 -2.3268 15 6 5.5813 1.2124 -1.4298 16 6 6.2472 2.3605 -0.6686 17 6 6.0230 -0.1228 -0.8272 18 6 5.3573 -1.2710 -1.5883 19 6 5.7704 -1.2143 -3.0604 20 6 5.3287 0.1209 -3.6630 21 6 5.9944 1.2690 -2.9018 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7465 1.9317 0.9288 28 1 1.6101 1.9799 -0.8453 29 1 4.2114 2.9060 3.9390 30 1 6.1242 2.2055 0.4033 31 1 7.3092 2.3902 -0.9120 32 1 5.7823 3.3041 -0.9550 33 1 7.1063 -0.2158 -0.9047 34 1 5.7287 -0.1632 0.2216 35 1 4.2740 -1.1782 -1.5111 36 1 5.6717 -2.2222 -1.1587 37 1 5.2965 -2.0326 -3.6026 38 1 6.8538 -1.3071 -3.1376 39 1 4.2454 0.2137 -3.5858 40 1 5.6234 0.1615 -4.7116 41 1 5.6795 2.2203 -3.3309 42 1 7.0778 1.1763 -2.9790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233034159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:13 Heat of formation + Delta-G solvation = -57.278529 kcal Electronic energy + Delta-G solvation = -21039.483769 eV Core-core repulsion = 18211.667019 eV Total energy + Delta-G solvation = -2827.816750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.73990 -38.53069 -36.96443 -34.93150 -33.82058 -32.93654 -31.48574 -27.73816 -27.17326 -26.79688 -23.54410 -23.32884 -22.57274 -21.35683 -20.21863 -18.78347 -17.57103 -17.03395 -16.24904 -15.98975 -15.73632 -15.49027 -14.94513 -14.86416 -14.59645 -14.28130 -14.15692 -13.91172 -13.48450 -13.26614 -13.01176 -12.90485 -12.81378 -12.55028 -12.53060 -12.49095 -12.30064 -11.94943 -11.87014 -11.67738 -11.54440 -11.36164 -10.91413 -10.85373 -10.62322 -9.97127 -9.57934 -8.39833 -6.02741 1.15461 1.29996 1.37614 1.99089 2.18884 2.68772 3.03031 3.79917 3.91381 3.95139 3.99358 4.13090 4.26345 4.34453 4.43310 4.47999 4.49957 4.59867 4.66813 4.69762 4.74434 4.87653 4.90803 4.93417 5.05889 5.08088 5.10581 5.17460 5.19283 5.24004 5.29720 5.35779 5.40555 5.47945 5.53667 5.59019 5.72049 5.79280 6.23963 6.37704 7.03300 7.51082 7.88320 8.71384 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.010198 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.672517 B = 2744.955697 C = 3360.525185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.093 3.907 4 N -0.481 5.481 5 C -0.321 4.321 6 H 0.116 0.884 7 C 0.025 3.975 8 N -0.904 5.904 9 Si 0.922 3.078 10 H -0.262 1.262 11 H -0.293 1.293 12 H -0.278 1.278 13 C 0.495 3.505 14 O -0.608 6.608 15 C -0.059 4.059 16 C -0.142 4.142 17 C -0.106 4.106 18 C -0.116 4.116 19 C -0.108 4.108 20 C -0.135 4.135 21 C -0.087 4.087 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.275 0.725 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 -4.790 -7.166 8.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.030 4.030 4 N -0.202 5.202 5 C -0.448 4.448 6 H 0.133 0.867 7 C -0.177 4.177 8 N -0.543 5.543 9 Si 0.751 3.249 10 H -0.189 1.189 11 H -0.221 1.221 12 H -0.203 1.203 13 C 0.286 3.714 14 O -0.494 6.494 15 C -0.062 4.062 16 C -0.200 4.200 17 C -0.143 4.143 18 C -0.154 4.154 19 C -0.145 4.145 20 C -0.172 4.172 21 C -0.124 4.124 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.602 -4.704 -7.439 8.822 hybrid contribution -0.861 1.016 0.451 1.406 sum -0.259 -3.688 -6.988 7.906 Atomic orbital electron populations 1.21689 0.93571 1.02886 1.01859 1.21682 0.97264 0.95685 1.01436 1.21783 0.83023 0.98328 0.99838 1.43927 1.04265 1.65827 1.06136 1.19418 1.07396 1.24817 0.93215 0.86723 1.25726 0.99026 0.97823 0.95162 1.69704 1.43189 1.39012 1.02385 0.86263 0.80983 0.79681 0.77927 1.18911 1.22106 1.20311 1.20906 0.91075 0.77473 0.81969 1.90407 1.66511 1.56073 1.36434 1.20506 0.90638 0.97678 0.97390 1.22049 0.99370 0.95597 1.02937 1.21645 1.00975 0.92081 0.99611 1.21507 0.99009 0.98386 0.96496 1.21471 1.01414 0.96977 0.94628 1.21810 1.02425 0.94432 0.98552 1.21350 1.00304 0.98544 0.92237 0.92653 0.92446 0.90547 0.92890 0.92263 0.92466 0.92529 0.91459 0.89972 0.91144 0.95242 0.89741 0.91838 0.95033 0.90829 0.91784 0.90613 0.91401 0.91658 0.93740 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.91 71.98 0.71 -3.56 16 2 C -0.12 -4.65 6.20 30.60 0.19 -4.46 16 3 C 0.09 4.12 3.74 86.38 0.32 4.44 16 4 N -0.48 -22.67 2.25 -635.52 -1.43 -24.10 16 5 C -0.32 -15.96 6.63 84.04 0.56 -15.40 16 6 H 0.12 5.83 3.92 -2.91 -0.01 5.82 16 7 C 0.03 1.29 5.43 84.93 0.46 1.75 16 8 N -0.90 -48.98 13.96 21.66 0.30 -48.68 16 9 Si 0.92 42.79 24.60 68.60 1.69 44.48 16 10 H -0.26 -11.48 6.67 99.48 0.66 -10.82 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.28 -13.36 6.95 99.48 0.69 -12.67 16 13 C 0.49 22.40 4.95 87.65 0.43 22.84 16 14 O -0.61 -29.48 13.11 -3.05 -0.04 -29.52 16 15 C -0.06 -2.25 0.50 -52.93 -0.03 -2.27 16 16 C -0.14 -5.46 7.81 71.98 0.56 -4.90 16 17 C -0.11 -3.63 4.54 30.60 0.14 -3.49 16 18 C -0.12 -3.71 5.70 30.59 0.17 -3.53 16 19 C -0.11 -2.96 5.92 30.59 0.18 -2.78 16 20 C -0.13 -4.30 5.63 30.59 0.17 -4.12 16 21 C -0.09 -2.86 4.38 30.59 0.13 -2.73 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.06 2.60 2.83 -2.39 -0.01 2.59 16 28 H 0.06 2.56 7.55 -2.39 -0.02 2.55 16 29 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.08 3.59 4.79 -2.39 -0.01 3.58 16 31 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 32 H 0.03 1.17 8.09 -2.38 -0.02 1.15 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.51 5.20 -2.39 -0.01 2.50 16 35 H 0.03 1.18 7.22 -2.38 -0.02 1.16 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.07 2.66 5.29 -2.38 -0.01 2.65 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -57.35 305.00 5.47 -51.88 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.93 Total: 24.15 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 4.02 Total: -18.21 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.13 Total: -72.79 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.04 Total: -29.52 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.69 Total: 44.48 kcal Total: -57.35 5.47 -51.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233034159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.395 kcal (2) G-P(sol) polarization free energy of solvation -57.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds