Wall clock time and date at job start Mon Mar 30 2020 07:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47085 * 2 1 4 4 C 1.53004 * 109.46917 * 240.00181 * 2 1 3 5 5 H 1.09000 * 109.47311 * 304.58916 * 4 2 1 6 6 C 1.53003 * 109.46917 * 64.58861 * 4 2 1 7 7 C 1.52995 * 109.46846 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47317 * 299.99693 * 7 6 4 9 9 H 1.08999 * 109.47054 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47137 * 300.00311 * 8 7 6 11 11 C 1.53003 * 109.46912 * 60.00348 * 8 7 6 12 12 C 1.52993 * 109.47060 * 184.58754 * 4 2 1 13 13 H 1.09000 * 109.47443 * 299.99747 * 12 4 2 14 14 N 1.46503 * 109.47297 * 60.00191 * 12 4 2 15 15 C 1.34771 * 120.00087 * 205.54254 * 14 12 4 16 16 O 1.21691 * 120.00003 * 0.02562 * 15 14 12 17 17 C 1.46376 * 120.00000 * 179.97438 * 15 14 12 18 18 H 1.08003 * 120.00052 * 359.97438 * 17 15 14 19 19 C 1.40047 * 119.99963 * 180.02562 * 17 15 14 20 20 N 1.30672 * 120.00167 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99707 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47404 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46866 * 119.99755 * 21 19 17 24 24 H 1.48498 * 109.47305 * 239.99215 * 21 19 17 25 25 H 1.08993 * 109.47259 * 60.07319 * 1 2 3 26 26 H 1.09005 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46702 * 300.07539 * 1 2 3 28 28 H 1.09001 * 109.47502 * 120.00570 * 2 1 3 29 29 H 1.08992 * 109.47428 * 300.00354 * 3 2 1 30 30 H 1.08999 * 109.47167 * 60.00630 * 3 2 1 31 31 H 1.08998 * 109.47066 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46843 * 299.99908 * 6 4 2 33 33 H 1.09000 * 109.47085 * 59.99916 * 6 4 2 34 34 H 1.09000 * 109.47439 * 60.00021 * 7 6 4 35 35 H 1.09001 * 109.46901 * 180.02562 * 7 6 4 36 36 H 1.08995 * 109.46755 * 59.99892 * 10 8 7 37 37 H 1.09000 * 109.46665 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.46794 * 299.99779 * 10 8 7 39 39 H 1.09000 * 109.47085 * 60.00137 * 11 8 7 40 40 H 1.09002 * 109.46843 * 180.02562 * 11 8 7 41 41 H 0.97003 * 119.99511 * 25.54991 * 14 12 4 42 42 H 0.96998 * 119.99876 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6111 -1.7224 -1.2914 6 6 1.6263 0.0637 -2.4958 7 6 2.1357 -0.6579 -3.7451 8 6 3.6613 -0.7591 -3.6892 9 1 4.0242 -1.2728 -4.5794 10 6 4.2639 0.6460 -3.6304 11 6 4.0750 -1.5440 -2.4427 12 6 3.5656 -0.8219 -1.1930 13 1 3.9945 0.1792 -1.1510 14 7 3.9617 -1.5735 0.0006 15 6 5.1755 -1.3733 0.5509 16 8 5.9424 -0.5680 0.0566 17 6 5.5711 -2.1238 1.7437 18 1 4.8900 -2.8376 2.1831 19 6 6.8322 -1.9155 2.3159 20 7 7.6561 -1.0515 1.7846 21 14 7.3366 -2.8727 3.8386 22 1 6.2330 -3.7815 4.2402 23 1 8.5520 -3.6724 3.5405 24 1 7.6264 -1.9258 4.9452 25 1 -0.3633 0.5127 -0.8906 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5150 0.8893 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 0.5394 0.1354 -2.5359 33 1 2.0552 1.0648 -2.4537 34 1 1.7064 -1.6589 -3.7870 35 1 1.8414 -0.0985 -4.6331 36 1 3.9010 1.1600 -2.7404 37 1 5.3508 0.5738 -3.5901 38 1 3.9692 1.2051 -4.5185 39 1 3.6457 -2.5451 -2.4846 40 1 5.1619 -1.6158 -2.4026 41 1 3.3502 -2.2152 0.3947 42 1 8.5297 -0.9074 2.1807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248400826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:42 Heat of formation + Delta-G solvation = -78.322449 kcal Electronic energy + Delta-G solvation = -20268.552904 eV Core-core repulsion = 17439.823622 eV Total energy + Delta-G solvation = -2828.729282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.74317 -36.68274 -35.26481 -32.97207 -32.10515 -30.04074 -28.69783 -27.01285 -26.15834 -25.87680 -23.05087 -21.86756 -19.42986 -19.21241 -18.21184 -16.98642 -15.65166 -15.30707 -14.73069 -14.36646 -14.19231 -13.91570 -13.63948 -13.28247 -12.75009 -12.54515 -12.40818 -12.21892 -12.00315 -11.94372 -11.59646 -11.26352 -11.09225 -11.02784 -10.98898 -10.79417 -10.63285 -10.44018 -10.37536 -10.29171 -10.16273 -9.78784 -9.65942 -9.44256 -8.80935 -7.51648 -7.34708 -6.13149 -4.58002 3.14981 3.23357 3.27580 4.14370 4.64555 4.80467 4.91323 4.99821 5.20734 5.29112 5.36004 5.41122 5.60014 5.68822 5.70900 5.79778 5.88407 5.90006 5.91897 5.98001 6.03670 6.08975 6.11864 6.15345 6.22697 6.29599 6.34753 6.40641 6.49005 6.51813 6.58202 6.71695 6.72935 6.75332 6.97374 7.04595 7.48210 8.02302 8.23036 8.41766 9.08315 9.64278 10.66416 10.87235 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.006532 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.620770 B = 4285.480678 C = 4890.477237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.086 4.086 5 H 0.065 0.935 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.088 4.088 9 H 0.061 0.939 10 C -0.148 4.148 11 C -0.123 4.123 12 C 0.160 3.840 13 H 0.082 0.918 14 N -0.761 5.761 15 C 0.558 3.442 16 O -0.580 6.580 17 C -0.547 4.547 18 H 0.065 0.935 19 C 0.088 3.912 20 N -0.769 5.769 21 Si 0.904 3.096 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.377 0.623 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.267 1.156 -6.873 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.106 4.106 5 H 0.083 0.917 6 C -0.153 4.153 7 C -0.150 4.150 8 C -0.107 4.107 9 H 0.079 0.921 10 C -0.205 4.205 11 C -0.163 4.163 12 C 0.054 3.946 13 H 0.100 0.900 14 N -0.415 5.415 15 C 0.361 3.639 16 O -0.463 6.463 17 C -0.584 4.584 18 H 0.084 0.916 19 C -0.131 4.131 20 N -0.398 5.398 21 Si 0.729 3.271 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.202 1.202 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.208 0.792 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.504 1.856 -7.220 13.708 hybrid contribution 0.002 -0.908 0.955 1.318 sum -11.502 0.948 -6.265 13.132 Atomic orbital electron populations 1.21887 0.96121 1.01136 1.01145 1.21078 0.94456 0.96667 0.98687 1.21909 1.02202 0.95844 1.00644 1.21423 0.96158 0.98774 0.94196 0.91691 1.21684 0.99893 0.99788 0.93892 1.21572 0.95719 1.00204 0.97535 1.21067 0.94839 0.96654 0.98148 0.92056 1.21906 1.01150 0.96312 1.01177 1.22002 1.01841 0.98181 0.94231 1.20589 0.91534 0.96954 0.85535 0.89994 1.46170 1.19288 1.45905 1.30090 1.18148 0.78990 0.82689 0.84057 1.90590 1.51643 1.38804 1.65238 1.20943 1.01119 1.24695 1.11642 0.91632 1.25680 0.96023 0.94104 0.97277 1.70033 1.06326 1.27378 1.36032 0.86385 0.78997 0.79983 0.81781 1.18857 1.20250 1.20238 0.92902 0.93141 0.93217 0.90466 0.93019 0.93453 0.91760 0.92248 0.91220 0.92433 0.92614 0.91925 0.92554 0.93662 0.92968 0.91405 0.79229 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.94 37.16 0.33 -1.38 16 2 C -0.09 -1.31 2.61 -90.62 -0.24 -1.54 16 3 C -0.15 -2.22 8.46 37.16 0.31 -1.91 16 4 C -0.09 -1.27 1.55 -90.62 -0.14 -1.41 16 5 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 6 C -0.11 -1.45 4.20 -26.73 -0.11 -1.56 16 7 C -0.11 -1.39 5.45 -26.74 -0.15 -1.53 16 8 C -0.09 -1.28 3.19 -90.62 -0.29 -1.57 16 9 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 10 C -0.15 -2.21 8.50 37.16 0.32 -1.89 16 11 C -0.12 -2.21 5.03 -26.70 -0.13 -2.34 16 12 C 0.16 3.00 1.38 -67.90 -0.09 2.90 16 13 H 0.08 1.76 4.26 -51.93 -0.22 1.54 16 14 N -0.76 -16.74 4.29 -55.19 -0.24 -16.98 16 15 C 0.56 15.64 7.72 -12.99 -0.10 15.54 16 16 O -0.58 -18.47 14.67 5.20 0.08 -18.39 16 17 C -0.55 -15.48 9.54 -35.63 -0.34 -15.82 16 18 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 19 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 20 N -0.77 -23.16 11.83 55.55 0.66 -22.51 16 21 Si 0.90 20.36 29.56 -169.99 -5.02 15.33 16 22 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H 0.05 0.57 6.55 -51.93 -0.34 0.23 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.27 7.33 -51.93 -0.38 0.89 16 29 H 0.05 0.68 6.35 -51.93 -0.33 0.35 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.16 6.55 -51.93 -0.34 0.82 16 32 H 0.06 0.66 6.55 -51.93 -0.34 0.32 16 33 H 0.07 0.91 4.64 -51.93 -0.24 0.67 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.99 4.81 -51.93 -0.25 0.74 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.38 7.48 8.40 -40.82 -0.34 7.14 16 42 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -32.26 314.88 -7.49 -39.75 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.98 Total: 8.16 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.73 Total: -10.12 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.42 Total: -39.49 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.08 Total: -18.39 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.26 -7.49 -39.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248400826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.568 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds