Wall clock time and date at job start Mon Mar 30 2020 07:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47085 * 2 1 4 4 C 1.53004 * 109.46917 * 240.00181 * 2 1 3 5 5 H 1.09000 * 109.47311 * 304.58916 * 4 2 1 6 6 C 1.53003 * 109.46917 * 64.58861 * 4 2 1 7 7 C 1.52995 * 109.46846 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47317 * 299.99693 * 7 6 4 9 9 H 1.08999 * 109.47054 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47137 * 300.00311 * 8 7 6 11 11 C 1.53003 * 109.46912 * 60.00348 * 8 7 6 12 12 C 1.52993 * 109.47060 * 184.58754 * 4 2 1 13 13 H 1.09000 * 109.47443 * 299.99747 * 12 4 2 14 14 N 1.46503 * 109.47297 * 60.00191 * 12 4 2 15 15 C 1.34771 * 120.00087 * 205.54254 * 14 12 4 16 16 O 1.21691 * 120.00003 * 0.02562 * 15 14 12 17 17 C 1.46376 * 120.00000 * 179.97438 * 15 14 12 18 18 H 1.08003 * 120.00052 * 359.97438 * 17 15 14 19 19 C 1.40047 * 119.99963 * 180.02562 * 17 15 14 20 20 N 1.30672 * 120.00167 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99707 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47404 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46866 * 119.99755 * 21 19 17 24 24 H 1.48498 * 109.47305 * 239.99215 * 21 19 17 25 25 H 1.08993 * 109.47259 * 60.07319 * 1 2 3 26 26 H 1.09005 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46702 * 300.07539 * 1 2 3 28 28 H 1.09001 * 109.47502 * 120.00570 * 2 1 3 29 29 H 1.08992 * 109.47428 * 300.00354 * 3 2 1 30 30 H 1.08999 * 109.47167 * 60.00630 * 3 2 1 31 31 H 1.08998 * 109.47066 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46843 * 299.99908 * 6 4 2 33 33 H 1.09000 * 109.47085 * 59.99916 * 6 4 2 34 34 H 1.09000 * 109.47439 * 60.00021 * 7 6 4 35 35 H 1.09001 * 109.46901 * 180.02562 * 7 6 4 36 36 H 1.08995 * 109.46755 * 59.99892 * 10 8 7 37 37 H 1.09000 * 109.46665 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.46794 * 299.99779 * 10 8 7 39 39 H 1.09000 * 109.47085 * 60.00137 * 11 8 7 40 40 H 1.09002 * 109.46843 * 180.02562 * 11 8 7 41 41 H 0.97003 * 119.99511 * 25.54991 * 14 12 4 42 42 H 0.96998 * 119.99876 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6111 -1.7224 -1.2914 6 6 1.6263 0.0637 -2.4958 7 6 2.1357 -0.6579 -3.7451 8 6 3.6613 -0.7591 -3.6892 9 1 4.0242 -1.2728 -4.5794 10 6 4.2639 0.6460 -3.6304 11 6 4.0750 -1.5440 -2.4427 12 6 3.5656 -0.8219 -1.1930 13 1 3.9945 0.1792 -1.1510 14 7 3.9617 -1.5735 0.0006 15 6 5.1755 -1.3733 0.5509 16 8 5.9424 -0.5680 0.0566 17 6 5.5711 -2.1238 1.7437 18 1 4.8900 -2.8376 2.1831 19 6 6.8322 -1.9155 2.3159 20 7 7.6561 -1.0515 1.7846 21 14 7.3366 -2.8727 3.8386 22 1 6.2330 -3.7815 4.2402 23 1 8.5520 -3.6724 3.5405 24 1 7.6264 -1.9258 4.9452 25 1 -0.3633 0.5127 -0.8906 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5150 0.8893 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 0.5394 0.1354 -2.5359 33 1 2.0552 1.0648 -2.4537 34 1 1.7064 -1.6589 -3.7870 35 1 1.8414 -0.0985 -4.6331 36 1 3.9010 1.1600 -2.7404 37 1 5.3508 0.5738 -3.5901 38 1 3.9692 1.2051 -4.5185 39 1 3.6457 -2.5451 -2.4846 40 1 5.1619 -1.6158 -2.4026 41 1 3.3502 -2.2152 0.3947 42 1 8.5297 -0.9074 2.1807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248400826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:42 Heat of formation + Delta-G solvation = -99.117386 kcal Electronic energy + Delta-G solvation = -20269.454641 eV Core-core repulsion = 17439.823622 eV Total energy + Delta-G solvation = -2829.631019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11341 -38.70234 -36.44609 -34.91354 -34.18787 -31.17472 -30.37210 -28.12326 -27.96855 -27.35586 -24.20678 -23.41756 -21.36951 -20.41783 -19.69911 -18.77733 -17.41502 -17.09455 -16.09685 -15.83235 -15.67229 -15.21134 -15.01990 -14.77853 -14.32425 -14.19765 -13.77616 -13.63065 -13.47334 -13.19259 -12.99350 -12.85541 -12.71093 -12.60645 -12.47558 -12.19694 -12.00639 -11.99516 -11.82486 -11.61462 -11.50741 -10.99864 -10.96738 -10.87450 -10.76887 -9.76039 -9.28422 -8.26824 -6.82752 1.37752 1.38060 1.55526 2.24126 2.50970 3.19612 3.63964 3.72394 3.85000 3.99210 4.13386 4.17101 4.22077 4.48843 4.50269 4.51001 4.61343 4.65506 4.73562 4.81488 4.87169 4.89542 5.01164 5.04659 5.09823 5.11931 5.17425 5.21626 5.29828 5.31757 5.32991 5.38044 5.44980 5.49026 5.55110 5.67237 5.69736 5.93685 6.29022 6.43945 6.89063 7.63915 8.55189 8.72950 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.006532 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.620770 B = 4285.480678 C = 4890.477237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.076 4.076 5 H 0.078 0.922 6 C -0.112 4.112 7 C -0.106 4.106 8 C -0.084 4.084 9 H 0.074 0.926 10 C -0.146 4.146 11 C -0.119 4.119 12 C 0.159 3.841 13 H 0.048 0.952 14 N -0.749 5.749 15 C 0.544 3.456 16 O -0.630 6.630 17 C -0.577 4.577 18 H 0.083 0.917 19 C 0.029 3.971 20 N -0.823 5.823 21 Si 0.994 3.006 22 H -0.248 1.248 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.018 0.982 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.389 0.611 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 0.156 -7.187 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.095 4.095 5 H 0.097 0.903 6 C -0.150 4.150 7 C -0.143 4.143 8 C -0.103 4.103 9 H 0.093 0.907 10 C -0.203 4.203 11 C -0.159 4.159 12 C 0.054 3.946 13 H 0.066 0.934 14 N -0.401 5.401 15 C 0.347 3.653 16 O -0.517 6.517 17 C -0.614 4.614 18 H 0.101 0.899 19 C -0.186 4.186 20 N -0.453 5.453 21 Si 0.814 3.186 22 H -0.171 1.171 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.034 0.966 41 H 0.221 0.779 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.501 0.838 -7.553 16.371 hybrid contribution 0.920 -0.562 1.014 1.480 sum -13.581 0.276 -6.539 15.075 Atomic orbital electron populations 1.21808 0.92997 1.02259 1.02334 1.21061 0.96935 0.95598 0.97363 1.21867 0.99237 0.96988 1.02069 1.21369 0.92242 1.00118 0.95807 0.90323 1.21703 1.01699 0.98938 0.92611 1.21553 0.92932 1.01475 0.98350 1.21075 0.97280 0.95522 0.96451 0.90713 1.21886 0.99267 0.97225 1.01965 1.21929 0.98537 0.99463 0.95922 1.20743 0.94810 0.94713 0.84349 0.93421 1.45870 1.17668 1.45810 1.30767 1.18472 0.80209 0.82211 0.84403 1.90545 1.53668 1.40832 1.66647 1.21480 1.02274 1.25367 1.12245 0.89933 1.26931 0.95594 0.94896 1.01152 1.70206 1.07117 1.29527 1.38437 0.85027 0.78960 0.78309 0.76321 1.17082 1.19400 1.19354 0.91057 0.92040 0.92736 0.93287 0.90766 0.92840 0.96242 0.89127 0.91904 0.91033 0.89887 0.93346 0.95531 0.90519 0.91851 0.96569 0.77851 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.94 71.98 0.64 -2.10 16 2 C -0.09 -2.53 2.61 -10.79 -0.03 -2.56 16 3 C -0.14 -4.34 8.46 71.98 0.61 -3.73 16 4 C -0.08 -2.13 1.55 -10.79 -0.02 -2.14 16 5 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 6 C -0.11 -2.46 4.20 30.59 0.13 -2.33 16 7 C -0.11 -2.20 5.45 30.59 0.17 -2.04 16 8 C -0.08 -2.36 3.19 -10.79 -0.03 -2.40 16 9 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 10 C -0.15 -4.41 8.50 71.98 0.61 -3.80 16 11 C -0.12 -4.42 5.03 30.61 0.15 -4.26 16 12 C 0.16 6.19 1.38 45.01 0.06 6.25 16 13 H 0.05 2.22 4.26 -2.39 -0.01 2.21 16 14 N -0.75 -34.45 4.29 -446.74 -1.92 -36.37 16 15 C 0.54 32.25 7.72 86.36 0.67 32.92 16 16 O -0.63 -43.11 14.67 -4.32 -0.06 -43.18 16 17 C -0.58 -33.68 9.54 24.83 0.24 -33.44 16 18 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 19 C 0.03 1.66 5.50 85.30 0.47 2.13 16 20 N -0.82 -51.81 11.83 21.84 0.26 -51.55 16 21 Si 0.99 42.26 29.56 68.60 2.03 44.29 16 22 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H 0.07 1.19 6.55 -2.39 -0.02 1.17 16 26 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.63 7.33 -2.39 -0.02 1.61 16 29 H 0.07 1.85 6.35 -2.39 -0.02 1.84 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.02 0.73 6.55 -2.39 -0.02 0.72 16 32 H 0.09 1.52 6.55 -2.39 -0.02 1.50 16 33 H 0.06 1.50 4.64 -2.39 -0.01 1.49 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.59 4.81 -2.39 -0.01 1.57 16 37 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.39 15.78 8.40 -92.71 -0.78 15.00 16 42 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -76.22 314.88 4.20 -72.02 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.22 Total: 32.29 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 3.67 Total: -17.50 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -1.66 Total: -87.92 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.06 Total: -43.18 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -76.22 4.20 -72.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248400826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.095 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds