Wall clock time and date at job start Mon Mar 30 2020 07:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 C 1.52997 * 109.47128 * 120.00083 * 2 1 3 5 5 H 1.09007 * 109.47192 * 299.99935 * 4 2 1 6 6 C 1.53000 * 109.47128 * 180.02562 * 4 2 1 7 7 C 1.53000 * 109.46954 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47010 * 60.00182 * 7 6 4 9 9 H 1.08997 * 109.47592 * 59.99579 * 8 7 6 10 10 C 1.53000 * 109.47010 * 179.97438 * 8 7 6 11 11 C 1.53000 * 109.47113 * 299.99720 * 8 7 6 12 12 C 1.52997 * 109.47128 * 59.99917 * 11 8 7 13 13 H 1.08996 * 109.47206 * 180.02562 * 12 11 8 14 14 N 1.46497 * 109.46876 * 60.00153 * 12 11 8 15 15 C 1.34777 * 120.00326 * 85.00452 * 14 12 11 16 16 O 1.21688 * 119.99820 * 359.97438 * 15 14 12 17 17 C 1.46377 * 120.00266 * 179.97438 * 15 14 12 18 18 H 1.07995 * 120.00284 * 353.93635 * 17 15 14 19 19 C 1.40048 * 119.99804 * 173.93263 * 17 15 14 20 20 N 1.30673 * 120.00017 * 6.15489 * 19 17 15 21 21 Si 1.86803 * 119.99971 * 186.14669 * 19 17 15 22 22 H 1.48507 * 109.46786 * 94.98627 * 21 19 17 23 23 H 1.48499 * 109.47344 * 214.98630 * 21 19 17 24 24 H 1.48494 * 109.46893 * 334.99164 * 21 19 17 25 25 H 1.08995 * 109.47112 * 59.99870 * 1 2 3 26 26 H 1.08994 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46776 * 300.00371 * 1 2 3 28 28 H 1.08997 * 109.47031 * 240.00129 * 2 1 3 29 29 H 1.09004 * 109.46773 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46983 * 299.99598 * 3 2 1 31 31 H 1.08997 * 109.47067 * 60.00151 * 3 2 1 32 32 H 1.08997 * 109.46776 * 299.99558 * 6 4 2 33 33 H 1.08994 * 109.47273 * 60.00144 * 6 4 2 34 34 H 1.08997 * 109.47557 * 300.00052 * 7 6 4 35 35 H 1.09004 * 109.47332 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.47301 * 180.02562 * 10 8 7 37 37 H 1.09008 * 109.47094 * 299.99171 * 10 8 7 38 38 H 1.08997 * 109.47557 * 59.99869 * 10 8 7 39 39 H 1.09007 * 109.47031 * 299.99883 * 11 8 7 40 40 H 1.09003 * 109.47357 * 179.97438 * 11 8 7 41 41 H 0.97004 * 120.00077 * 264.99952 * 14 12 11 42 42 H 0.97005 * 119.99721 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 3.5700 -0.7207 1.2495 7 6 4.0800 -1.4414 2.4991 8 6 3.5705 -2.8841 2.4993 9 1 3.9341 -3.3981 1.6096 10 6 4.0810 -3.6050 3.7486 11 6 2.0405 -2.8847 2.4990 12 6 1.5305 -2.1639 1.2495 13 1 0.4405 -2.1639 1.2495 14 7 2.0193 -2.8547 0.0537 15 6 1.3430 -3.9118 -0.4378 16 8 0.3265 -4.2928 0.1121 17 6 1.8311 -4.6016 -1.6330 18 1 2.6757 -4.2062 -2.1776 19 6 1.2029 -5.7744 -2.0702 20 7 0.1100 -6.1874 -1.4849 21 14 1.9271 -6.7483 -3.4902 22 1 2.7919 -7.8316 -2.9573 23 1 0.8289 -7.3420 -4.2944 24 1 2.7364 -5.8456 -4.3477 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9336 -1.2343 0.3596 33 1 3.9330 0.3070 1.2498 34 1 3.7163 -0.9275 3.3889 35 1 5.1700 -1.4414 2.4992 36 1 3.7184 -4.6330 3.7486 37 1 5.1710 -3.6047 3.7483 38 1 3.7177 -3.0913 4.6386 39 1 1.6768 -2.3707 3.3889 40 1 1.6775 -3.9125 2.4987 41 1 2.8298 -2.5512 -0.3845 42 1 -0.3254 -6.9995 -1.7880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248400828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:45 Heat of formation + Delta-G solvation = -81.063708 kcal Electronic energy + Delta-G solvation = -20227.632069 eV Core-core repulsion = 17398.783917 eV Total energy + Delta-G solvation = -2828.848152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.62519 -36.47305 -35.29361 -32.78202 -31.99901 -30.74014 -29.05202 -26.86088 -25.96705 -25.82295 -22.04690 -21.59344 -20.38058 -19.41174 -18.10236 -17.27108 -15.46823 -15.00356 -14.71633 -14.70658 -13.93038 -13.79019 -13.59288 -13.24591 -12.83572 -12.36651 -12.29633 -12.26932 -11.95900 -11.90696 -11.65451 -11.56184 -11.12838 -10.97459 -10.94707 -10.78346 -10.62516 -10.57539 -10.38090 -10.27353 -10.15902 -9.94774 -9.64156 -9.30031 -8.79286 -7.51366 -7.33390 -6.13464 -4.56909 3.16044 3.23480 3.26627 4.14965 4.65268 4.86815 4.96102 5.06881 5.15909 5.24496 5.35222 5.41944 5.55076 5.71406 5.80254 5.82560 5.86763 5.89117 5.93000 5.97604 6.08498 6.09833 6.12114 6.18155 6.23815 6.28543 6.29361 6.35645 6.45907 6.47329 6.65046 6.70861 6.76604 6.88496 6.90973 7.00983 7.48838 8.03254 8.24237 8.42746 9.08961 9.65519 10.66837 10.88087 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.007260 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.304328 B = 3855.650402 C = 4563.968389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.086 4.086 5 H 0.069 0.931 6 C -0.115 4.115 7 C -0.110 4.110 8 C -0.090 4.090 9 H 0.075 0.925 10 C -0.144 4.144 11 C -0.122 4.122 12 C 0.160 3.840 13 H 0.077 0.923 14 N -0.754 5.754 15 C 0.559 3.441 16 O -0.582 6.582 17 C -0.547 4.547 18 H 0.065 0.935 19 C 0.089 3.911 20 N -0.769 5.769 21 Si 0.903 3.097 22 H -0.274 1.274 23 H -0.280 1.280 24 H -0.266 1.266 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.377 0.623 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.880 10.893 5.373 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.105 4.105 5 H 0.087 0.913 6 C -0.152 4.152 7 C -0.147 4.147 8 C -0.108 4.108 9 H 0.094 0.906 10 C -0.201 4.201 11 C -0.161 4.161 12 C 0.054 3.946 13 H 0.095 0.905 14 N -0.410 5.410 15 C 0.362 3.638 16 O -0.465 6.465 17 C -0.585 4.585 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.397 5.397 21 Si 0.728 3.272 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.190 1.190 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.209 0.791 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.957 10.475 5.789 13.368 hybrid contribution 0.771 -0.406 -0.888 1.244 sum 6.728 10.068 4.901 13.064 Atomic orbital electron populations 1.21856 0.95415 1.02707 1.00510 1.21074 0.95850 0.95057 0.98775 1.21904 1.00786 0.96633 1.01029 1.21446 0.95150 0.96142 0.97755 0.91311 1.21617 0.95515 0.99751 0.98339 1.21568 0.99410 0.95917 0.97821 1.21072 0.96204 0.95142 0.98431 0.90624 1.21813 1.00070 1.00488 0.97777 1.21969 0.94552 1.01829 0.97712 1.20505 0.98887 0.89082 0.86170 0.90544 1.46154 1.30067 1.35216 1.29515 1.18134 0.82920 0.78139 0.84607 1.90588 1.26313 1.66462 1.63124 1.20891 1.16755 1.09816 1.10999 0.91708 1.25669 0.93690 0.97124 0.96529 1.70032 1.14059 1.19444 1.36209 0.86442 0.79224 0.80101 0.81459 1.19912 1.20547 1.18977 0.93402 0.91424 0.93491 0.90613 0.92726 0.93251 0.93243 0.91847 0.92237 0.92613 0.92731 0.92828 0.93395 0.93343 0.93044 0.91397 0.79079 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.84 37.16 0.33 -1.91 16 2 C -0.09 -1.28 2.35 -90.62 -0.21 -1.49 16 3 C -0.15 -1.70 8.84 37.16 0.33 -1.37 16 4 C -0.09 -1.24 1.57 -90.62 -0.14 -1.39 16 5 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 6 C -0.11 -1.49 4.68 -26.73 -0.13 -1.61 16 7 C -0.11 -1.40 5.20 -26.73 -0.14 -1.54 16 8 C -0.09 -1.38 2.56 -90.62 -0.23 -1.61 16 9 H 0.08 1.32 7.60 -51.93 -0.39 0.92 16 10 C -0.14 -1.96 9.19 37.16 0.34 -1.62 16 11 C -0.12 -2.16 4.88 -26.73 -0.13 -2.29 16 12 C 0.16 2.98 1.88 -67.93 -0.13 2.85 16 13 H 0.08 1.65 5.87 -51.93 -0.30 1.34 16 14 N -0.75 -16.20 3.54 -55.22 -0.20 -16.39 16 15 C 0.56 15.50 7.71 -12.99 -0.10 15.40 16 16 O -0.58 -18.48 14.71 5.20 0.08 -18.40 16 17 C -0.55 -15.39 9.54 -35.63 -0.34 -15.73 16 18 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 19 C 0.09 2.50 5.49 -17.37 -0.10 2.40 16 20 N -0.77 -23.12 11.85 55.55 0.66 -22.46 16 21 Si 0.90 20.33 29.56 -169.99 -5.03 15.30 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 27 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.08 1.22 7.45 -51.93 -0.39 0.83 16 29 H 0.05 0.59 6.43 -51.93 -0.33 0.25 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.87 6.51 -51.93 -0.34 0.54 16 33 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.38 7.38 6.63 -40.82 -0.27 7.11 16 42 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -31.92 320.91 -7.61 -39.54 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.32 Total: 7.48 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.65 Total: -9.90 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.46 Total: -38.85 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.08 Total: -18.40 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.92 -7.61 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248400828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.528 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds