Wall clock time and date at job start Mon Mar 30 2020 07:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 C 1.52997 * 109.47128 * 120.00083 * 2 1 3 5 5 H 1.09007 * 109.47192 * 299.99935 * 4 2 1 6 6 C 1.53000 * 109.47128 * 180.02562 * 4 2 1 7 7 C 1.53000 * 109.46954 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47010 * 60.00182 * 7 6 4 9 9 H 1.08997 * 109.47592 * 59.99579 * 8 7 6 10 10 C 1.53000 * 109.47010 * 179.97438 * 8 7 6 11 11 C 1.53000 * 109.47113 * 299.99720 * 8 7 6 12 12 C 1.52997 * 109.47128 * 59.99917 * 11 8 7 13 13 H 1.08996 * 109.47206 * 180.02562 * 12 11 8 14 14 N 1.46497 * 109.46876 * 60.00153 * 12 11 8 15 15 C 1.34777 * 120.00326 * 85.00452 * 14 12 11 16 16 O 1.21688 * 119.99820 * 359.97438 * 15 14 12 17 17 C 1.46377 * 120.00266 * 179.97438 * 15 14 12 18 18 H 1.07995 * 120.00284 * 353.93635 * 17 15 14 19 19 C 1.40048 * 119.99804 * 173.93263 * 17 15 14 20 20 N 1.30673 * 120.00017 * 6.15489 * 19 17 15 21 21 Si 1.86803 * 119.99971 * 186.14669 * 19 17 15 22 22 H 1.48507 * 109.46786 * 94.98627 * 21 19 17 23 23 H 1.48499 * 109.47344 * 214.98630 * 21 19 17 24 24 H 1.48494 * 109.46893 * 334.99164 * 21 19 17 25 25 H 1.08995 * 109.47112 * 59.99870 * 1 2 3 26 26 H 1.08994 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46776 * 300.00371 * 1 2 3 28 28 H 1.08997 * 109.47031 * 240.00129 * 2 1 3 29 29 H 1.09004 * 109.46773 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46983 * 299.99598 * 3 2 1 31 31 H 1.08997 * 109.47067 * 60.00151 * 3 2 1 32 32 H 1.08997 * 109.46776 * 299.99558 * 6 4 2 33 33 H 1.08994 * 109.47273 * 60.00144 * 6 4 2 34 34 H 1.08997 * 109.47557 * 300.00052 * 7 6 4 35 35 H 1.09004 * 109.47332 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.47301 * 180.02562 * 10 8 7 37 37 H 1.09008 * 109.47094 * 299.99171 * 10 8 7 38 38 H 1.08997 * 109.47557 * 59.99869 * 10 8 7 39 39 H 1.09007 * 109.47031 * 299.99883 * 11 8 7 40 40 H 1.09003 * 109.47357 * 179.97438 * 11 8 7 41 41 H 0.97004 * 120.00077 * 264.99952 * 14 12 11 42 42 H 0.97005 * 119.99721 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 3.5700 -0.7207 1.2495 7 6 4.0800 -1.4414 2.4991 8 6 3.5705 -2.8841 2.4993 9 1 3.9341 -3.3981 1.6096 10 6 4.0810 -3.6050 3.7486 11 6 2.0405 -2.8847 2.4990 12 6 1.5305 -2.1639 1.2495 13 1 0.4405 -2.1639 1.2495 14 7 2.0193 -2.8547 0.0537 15 6 1.3430 -3.9118 -0.4378 16 8 0.3265 -4.2928 0.1121 17 6 1.8311 -4.6016 -1.6330 18 1 2.6757 -4.2062 -2.1776 19 6 1.2029 -5.7744 -2.0702 20 7 0.1100 -6.1874 -1.4849 21 14 1.9271 -6.7483 -3.4902 22 1 2.7919 -7.8316 -2.9573 23 1 0.8289 -7.3420 -4.2944 24 1 2.7364 -5.8456 -4.3477 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9336 -1.2343 0.3596 33 1 3.9330 0.3070 1.2498 34 1 3.7163 -0.9275 3.3889 35 1 5.1700 -1.4414 2.4992 36 1 3.7184 -4.6330 3.7486 37 1 5.1710 -3.6047 3.7483 38 1 3.7177 -3.0913 4.6386 39 1 1.6768 -2.3707 3.3889 40 1 1.6775 -3.9125 2.4987 41 1 2.8298 -2.5512 -0.3845 42 1 -0.3254 -6.9995 -1.7880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248400828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:44 Heat of formation + Delta-G solvation = -100.848872 kcal Electronic energy + Delta-G solvation = -20228.490019 eV Core-core repulsion = 17398.783917 eV Total energy + Delta-G solvation = -2829.706101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05200 -38.48051 -36.47550 -34.77537 -33.95654 -31.88964 -30.69667 -28.04022 -27.95921 -27.01232 -23.41953 -22.85341 -22.14738 -20.62752 -19.64671 -19.24749 -17.47701 -16.48482 -16.29104 -16.03222 -15.72089 -14.97334 -14.82547 -14.68267 -14.29236 -14.14214 -13.85920 -13.51842 -13.25037 -13.09861 -13.02607 -12.93618 -12.83801 -12.67066 -12.54209 -12.27011 -12.02165 -11.89699 -11.83749 -11.77573 -11.40212 -11.21651 -10.96224 -10.85270 -10.59978 -9.76535 -9.26430 -8.26721 -6.80761 1.37726 1.39143 1.54375 2.24491 2.52345 3.25218 3.66063 3.75015 3.83161 3.94638 4.08568 4.15436 4.28137 4.40286 4.54635 4.60890 4.68642 4.75754 4.77269 4.82859 4.83981 4.91212 4.99976 5.02860 5.04860 5.12277 5.15094 5.20858 5.25863 5.33024 5.33676 5.44763 5.47773 5.50048 5.57332 5.67192 5.68370 5.94460 6.30587 6.46172 6.90305 7.66333 8.56365 8.74555 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.007260 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.304328 B = 3855.650402 C = 4563.968389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.075 4.075 5 H 0.088 0.912 6 C -0.112 4.112 7 C -0.102 4.102 8 C -0.088 4.088 9 H 0.047 0.953 10 C -0.141 4.141 11 C -0.117 4.117 12 C 0.157 3.843 13 H 0.037 0.963 14 N -0.736 5.736 15 C 0.545 3.455 16 O -0.633 6.633 17 C -0.577 4.577 18 H 0.082 0.918 19 C 0.030 3.970 20 N -0.823 5.823 21 Si 0.993 3.007 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.249 1.249 25 H 0.054 0.946 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.015 0.985 41 H 0.388 0.612 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.602 13.019 5.330 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.195 4.195 4 C -0.094 4.094 5 H 0.106 0.894 6 C -0.149 4.149 7 C -0.139 4.139 8 C -0.106 4.106 9 H 0.066 0.934 10 C -0.198 4.198 11 C -0.156 4.156 12 C 0.051 3.949 13 H 0.055 0.945 14 N -0.390 5.390 15 C 0.348 3.652 16 O -0.521 6.521 17 C -0.613 4.613 18 H 0.100 0.900 19 C -0.185 4.185 20 N -0.453 5.453 21 Si 0.812 3.188 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.172 1.172 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.034 0.966 41 H 0.223 0.777 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.722 12.653 5.757 16.411 hybrid contribution -0.139 -1.033 -0.821 1.327 sum 8.584 11.620 4.937 15.267 Atomic orbital electron populations 1.21823 0.96569 1.00013 1.01813 1.21059 0.94869 0.97200 0.97596 1.21825 1.01662 0.93921 1.02052 1.21385 0.96712 0.92553 0.98727 0.89354 1.21634 0.93574 1.01594 0.98094 1.21537 1.00679 0.93344 0.98379 1.21036 0.93799 0.97597 0.98194 0.93440 1.21780 1.01329 0.99207 0.97476 1.21897 0.96900 0.98759 0.98066 1.20652 0.96870 0.92104 0.85255 0.94473 1.45766 1.29573 1.33613 1.30057 1.18453 0.82618 0.79238 0.84862 1.90542 1.28608 1.68345 1.64586 1.21418 1.17509 1.10775 1.11635 0.90029 1.26913 0.93691 0.98109 0.99784 1.70207 1.16074 1.20363 1.38644 0.85088 0.78457 0.78216 0.77020 1.18921 1.19803 1.17189 0.92675 0.96045 0.91613 0.92978 0.91192 0.92778 0.91759 0.92986 0.89004 0.90749 0.90542 0.94937 0.91307 0.91593 0.90782 0.96588 0.77733 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 8.84 71.98 0.64 -3.82 16 2 C -0.09 -2.43 2.35 -10.79 -0.03 -2.46 16 3 C -0.14 -2.70 8.84 71.98 0.64 -2.06 16 4 C -0.07 -2.05 1.57 -10.79 -0.02 -2.07 16 5 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 6 C -0.11 -2.52 4.68 30.59 0.14 -2.38 16 7 C -0.10 -2.23 5.20 30.60 0.16 -2.07 16 8 C -0.09 -2.61 2.56 -10.79 -0.03 -2.64 16 9 H 0.05 1.67 7.60 -2.39 -0.02 1.65 16 10 C -0.14 -3.63 9.19 71.98 0.66 -2.97 16 11 C -0.12 -4.30 4.88 30.59 0.15 -4.15 16 12 C 0.16 6.09 1.88 44.99 0.08 6.17 16 13 H 0.04 1.74 5.87 -2.39 -0.01 1.72 16 14 N -0.74 -33.19 3.54 -446.84 -1.58 -34.77 16 15 C 0.54 32.08 7.71 86.36 0.67 32.75 16 16 O -0.63 -43.31 14.71 -4.31 -0.06 -43.37 16 17 C -0.58 -33.50 9.54 24.83 0.24 -33.26 16 18 H 0.08 4.30 7.85 -2.91 -0.02 4.27 16 19 C 0.03 1.70 5.49 85.30 0.47 2.17 16 20 N -0.82 -51.79 11.85 21.84 0.26 -51.53 16 21 Si 0.99 42.23 29.56 68.60 2.03 44.26 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 26 H 0.02 0.83 6.43 -2.39 -0.02 0.81 16 27 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.05 1.67 7.45 -2.39 -0.02 1.65 16 29 H 0.07 1.18 6.43 -2.38 -0.02 1.17 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.31 6.51 -2.39 -0.02 1.29 16 33 H 0.09 1.58 6.43 -2.39 -0.02 1.56 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.39 15.62 6.63 -92.71 -0.61 15.01 16 42 H 0.27 15.54 8.29 -92.70 -0.77 14.77 16 Total: -1.00 -75.62 320.91 4.79 -70.84 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.37 Total: 31.36 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 3.77 Total: -16.78 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -1.32 Total: -86.31 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.06 Total: -43.37 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -75.62 4.79 -70.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248400828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.009 kcal (2) G-P(sol) polarization free energy of solvation -75.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds