Wall clock time and date at job start Mon Mar 30 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47182 * 2 1 4 4 N 1.46895 * 109.47000 * 119.99865 * 2 1 3 5 5 C 1.46899 * 110.99841 * 86.30787 * 4 2 1 6 6 H 1.08997 * 109.88487 * 346.17913 * 5 4 2 7 7 C 1.53718 * 109.89497 * 225.13007 * 5 4 2 8 8 C 1.52578 * 111.47965 * 182.52538 * 7 5 4 9 9 C 1.53751 * 111.41132 * 54.73580 * 8 7 5 10 10 C 1.51485 * 107.35103 * 302.55787 * 9 8 7 11 11 H 1.09006 * 109.68395 * 305.75681 * 10 9 8 12 12 O 1.42317 * 117.59729 * 179.55267 * 10 9 8 13 13 C 1.45027 * 105.23551 * 198.05717 * 12 10 9 14 14 H 1.09000 * 109.90940 * 267.43622 * 13 12 10 15 15 C 1.50700 * 109.91384 * 146.35750 * 13 12 10 16 16 H 1.08007 * 119.99596 * 241.44813 * 15 13 12 17 17 C 1.37871 * 120.00378 * 61.44808 * 15 13 12 18 18 N 1.31511 * 120.00255 * 180.02562 * 17 15 13 19 19 Si 1.86799 * 119.99965 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47003 * 270.00030 * 19 17 15 21 21 H 1.48496 * 109.47152 * 150.00089 * 19 17 15 22 22 H 1.48500 * 109.47137 * 29.99998 * 19 17 15 23 23 C 1.55074 * 107.09028 * 26.98696 * 13 12 10 24 24 C 1.51852 * 109.95656 * 107.25761 * 5 4 2 25 25 H 1.09002 * 110.77074 * 63.14860 * 24 5 4 26 26 H 1.09005 * 109.47147 * 64.79383 * 1 2 3 27 27 H 1.08999 * 109.46878 * 184.79332 * 1 2 3 28 28 H 1.09004 * 109.47010 * 304.79399 * 1 2 3 29 29 H 1.09001 * 109.47246 * 240.00021 * 2 1 3 30 30 H 1.08997 * 109.46970 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46992 * 300.00180 * 3 2 1 32 32 H 1.09001 * 109.47013 * 59.99878 * 3 2 1 33 33 H 1.00903 * 111.00517 * 322.35750 * 4 2 1 34 34 H 1.08997 * 109.07670 * 62.00557 * 7 5 4 35 35 H 1.09006 * 109.02304 * 303.00063 * 7 5 4 36 36 H 1.09004 * 109.08496 * 294.23869 * 8 7 5 37 37 H 1.08996 * 109.03972 * 175.20651 * 8 7 5 38 38 H 1.08998 * 109.88528 * 183.09357 * 9 8 7 39 39 H 1.09005 * 109.94349 * 62.05184 * 9 8 7 40 40 H 0.97002 * 120.00185 * 179.97438 * 18 17 15 41 41 H 1.09007 * 110.69336 * 120.06617 * 23 13 12 42 42 H 1.08995 * 110.69943 * 243.27258 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.1118 -2.1406 0.9705 6 1 1.5734 -2.4071 0.0611 7 6 1.5204 -2.8985 2.1699 8 6 1.6539 -4.4086 1.9975 9 6 3.1131 -4.8170 1.7368 10 6 3.5779 -4.0698 0.5038 11 1 2.8901 -4.2581 -0.3207 12 8 4.9164 -4.2825 0.0696 13 6 5.2147 -3.1662 -0.8070 14 1 4.9881 -3.4338 -1.8390 15 6 6.6685 -2.7897 -0.6821 16 1 6.9433 -1.8048 -0.3342 17 6 7.6479 -3.7023 -1.0120 18 7 8.9166 -3.3739 -0.9025 19 14 7.1726 -5.4055 -1.6144 20 1 7.0542 -6.3255 -0.4548 21 1 8.2155 -5.9110 -2.5428 22 1 5.8704 -5.3339 -2.3245 23 6 4.3215 -1.9814 -0.3561 24 6 3.5678 -2.5544 0.8488 25 1 4.1033 -2.3622 1.7786 26 1 -0.3634 0.4377 -0.9299 27 1 -0.3633 -1.0241 0.0859 28 1 -0.3633 0.5864 0.8440 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.4370 -0.4890 1.9977 34 1 0.4653 -2.6429 2.2677 35 1 2.0456 -2.5955 3.0757 36 1 1.0387 -4.7270 1.1558 37 1 1.3017 -4.9024 2.9031 38 1 3.1720 -5.8914 1.5634 39 1 3.7335 -4.5450 2.5909 40 1 9.6056 -4.0162 -1.1342 41 1 4.9330 -1.1295 -0.0584 42 1 3.6263 -1.7002 -1.1470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252738313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:12 Heat of formation + Delta-G solvation = -59.749493 kcal Electronic energy + Delta-G solvation = -20188.170267 eV Core-core repulsion = 17360.246368 eV Total energy + Delta-G solvation = -2827.923899 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91861 -37.22915 -35.36973 -32.52378 -31.96033 -30.26202 -28.90005 -27.26282 -27.13598 -24.59958 -21.65705 -21.24356 -20.72871 -20.08017 -19.44320 -17.00652 -15.76837 -15.29571 -15.04525 -14.61373 -14.51634 -14.33275 -13.80072 -13.49342 -13.35732 -13.16478 -12.48883 -12.31654 -12.23756 -12.16744 -11.93149 -11.61107 -11.30389 -11.21446 -10.93134 -10.85036 -10.79006 -10.59164 -10.38888 -10.17350 -9.72838 -9.61733 -9.51154 -9.30998 -8.54654 -8.32690 -8.19182 -6.04465 -4.11948 3.45260 3.51617 3.61615 4.14782 4.50359 4.60671 4.81267 4.91758 5.00101 5.06774 5.20674 5.30221 5.40095 5.42989 5.54308 5.57420 5.63583 5.66286 5.75245 5.77821 5.80896 5.84079 5.93607 6.03117 6.08043 6.16115 6.17459 6.26773 6.34595 6.40125 6.47601 6.55801 6.65888 6.88602 6.94436 7.23278 7.32219 7.53804 7.68831 8.23634 8.50966 8.97436 9.59331 11.06094 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.007095 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.367713 B = 3945.227716 C = 4780.222774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.077 3.923 3 C -0.138 4.138 4 N -0.674 5.674 5 C 0.099 3.901 6 H 0.053 0.947 7 C -0.128 4.128 8 C -0.109 4.109 9 C -0.110 4.110 10 C 0.069 3.931 11 H 0.040 0.960 12 O -0.376 6.376 13 C 0.163 3.837 14 H 0.029 0.971 15 C -0.515 4.515 16 H 0.079 0.921 17 C 0.081 3.919 18 N -0.894 5.894 19 Si 0.902 3.098 20 H -0.275 1.275 21 H -0.299 1.299 22 H -0.268 1.268 23 C -0.114 4.114 24 C -0.103 4.103 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.335 0.665 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.265 0.735 41 H 0.074 0.926 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.445 3.239 4.088 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.033 4.033 3 C -0.196 4.196 4 N -0.304 5.304 5 C -0.010 4.010 6 H 0.071 0.929 7 C -0.166 4.166 8 C -0.147 4.147 9 C -0.148 4.148 10 C 0.009 3.991 11 H 0.058 0.942 12 O -0.296 6.296 13 C 0.108 3.892 14 H 0.047 0.953 15 C -0.551 4.551 16 H 0.097 0.903 17 C -0.123 4.123 18 N -0.532 5.532 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.227 1.227 22 H -0.193 1.193 23 C -0.152 4.152 24 C -0.123 4.123 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.153 0.847 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.466 3.143 3.971 18.185 hybrid contribution -1.241 -0.995 -0.315 1.622 sum -18.707 2.147 3.656 19.181 Atomic orbital electron populations 1.22546 0.97839 1.01491 1.02123 1.21685 0.91888 0.95862 0.93840 1.21750 1.02332 0.94773 1.00769 1.60636 1.56202 1.08077 1.05535 1.21496 0.96265 0.86489 0.96773 0.92855 1.21935 0.99861 0.95694 0.99142 1.21418 0.96680 0.95167 1.01438 1.21365 0.95276 1.00052 0.98084 1.22345 0.87719 0.94190 0.94830 0.94171 1.88932 1.25860 1.48406 1.66417 1.21328 0.96082 0.82347 0.89453 0.95350 1.21123 0.87441 1.01126 1.45461 0.90261 1.25069 0.94687 0.98758 0.93759 1.69935 0.99670 1.35790 1.47821 0.86400 0.77479 0.84391 0.78666 1.20051 1.22693 1.19290 1.22485 0.97380 0.99706 0.95595 1.22447 0.94086 0.95479 1.00253 0.89850 0.92309 0.93017 0.92642 0.90290 0.91575 0.92894 0.93083 0.84664 0.92620 0.91232 0.92345 0.91748 0.91724 0.91040 0.92591 0.90742 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.18 37.16 0.34 -1.36 16 2 C 0.08 0.89 3.00 -67.71 -0.20 0.69 16 3 C -0.14 -1.53 9.52 37.16 0.35 -1.17 16 4 N -0.67 -8.48 6.10 -99.96 -0.61 -9.09 16 5 C 0.10 1.36 2.00 -67.92 -0.14 1.22 16 6 H 0.05 0.75 7.23 -51.93 -0.38 0.37 16 7 C -0.13 -1.48 5.00 -26.57 -0.13 -1.61 16 8 C -0.11 -1.30 5.84 -26.56 -0.16 -1.45 16 9 C -0.11 -1.71 5.97 -27.11 -0.16 -1.88 16 10 C 0.07 1.31 2.76 -26.21 -0.07 1.24 16 11 H 0.04 0.74 7.93 -51.93 -0.41 0.33 16 12 O -0.38 -9.28 9.04 -35.23 -0.32 -9.60 16 13 C 0.16 4.07 2.70 -26.79 -0.07 4.00 16 14 H 0.03 0.73 7.19 -51.93 -0.37 0.36 16 15 C -0.51 -15.11 9.38 -34.44 -0.32 -15.43 16 16 H 0.08 2.47 7.60 -52.48 -0.40 2.08 16 17 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 18 N -0.89 -28.07 13.96 55.43 0.77 -27.29 16 19 Si 0.90 23.84 26.27 -169.99 -4.47 19.37 16 20 H -0.27 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 22 H -0.27 -6.90 6.53 56.52 0.37 -6.53 16 23 C -0.11 -2.35 6.21 -25.51 -0.16 -2.51 16 24 C -0.10 -1.85 2.33 -89.80 -0.21 -2.05 16 25 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.49 7.97 -51.93 -0.41 0.08 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.04 6.58 -51.93 -0.34 0.70 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.34 3.64 7.89 -39.29 -0.31 3.33 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 40 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 41 H 0.07 1.64 7.43 -51.92 -0.39 1.25 16 42 H 0.05 0.86 6.96 -51.93 -0.36 0.50 16 LS Contribution 318.13 15.07 4.79 4.79 Total: -1.00 -31.42 318.13 -8.46 -39.88 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.61 Total: -0.10 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -1.03 Total: -17.97 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.16 Total: -36.38 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.32 Total: -9.60 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.47 Total: 19.37 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.42 -8.46 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252738313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.867 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds