Wall clock time and date at job start Mon Mar 30 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47182 * 2 1 4 4 N 1.46895 * 109.47000 * 119.99865 * 2 1 3 5 5 C 1.46899 * 110.99841 * 86.30787 * 4 2 1 6 6 H 1.08997 * 109.88487 * 346.17913 * 5 4 2 7 7 C 1.53718 * 109.89497 * 225.13007 * 5 4 2 8 8 C 1.52578 * 111.47965 * 182.52538 * 7 5 4 9 9 C 1.53751 * 111.41132 * 54.73580 * 8 7 5 10 10 C 1.51485 * 107.35103 * 302.55787 * 9 8 7 11 11 H 1.09006 * 109.68395 * 305.75681 * 10 9 8 12 12 O 1.42317 * 117.59729 * 179.55267 * 10 9 8 13 13 C 1.45027 * 105.23551 * 198.05717 * 12 10 9 14 14 H 1.09000 * 109.90940 * 267.43622 * 13 12 10 15 15 C 1.50700 * 109.91384 * 146.35750 * 13 12 10 16 16 H 1.08007 * 119.99596 * 241.44813 * 15 13 12 17 17 C 1.37871 * 120.00378 * 61.44808 * 15 13 12 18 18 N 1.31511 * 120.00255 * 180.02562 * 17 15 13 19 19 Si 1.86799 * 119.99965 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47003 * 270.00030 * 19 17 15 21 21 H 1.48496 * 109.47152 * 150.00089 * 19 17 15 22 22 H 1.48500 * 109.47137 * 29.99998 * 19 17 15 23 23 C 1.55074 * 107.09028 * 26.98696 * 13 12 10 24 24 C 1.51852 * 109.95656 * 107.25761 * 5 4 2 25 25 H 1.09002 * 110.77074 * 63.14860 * 24 5 4 26 26 H 1.09005 * 109.47147 * 64.79383 * 1 2 3 27 27 H 1.08999 * 109.46878 * 184.79332 * 1 2 3 28 28 H 1.09004 * 109.47010 * 304.79399 * 1 2 3 29 29 H 1.09001 * 109.47246 * 240.00021 * 2 1 3 30 30 H 1.08997 * 109.46970 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46992 * 300.00180 * 3 2 1 32 32 H 1.09001 * 109.47013 * 59.99878 * 3 2 1 33 33 H 1.00903 * 111.00517 * 322.35750 * 4 2 1 34 34 H 1.08997 * 109.07670 * 62.00557 * 7 5 4 35 35 H 1.09006 * 109.02304 * 303.00063 * 7 5 4 36 36 H 1.09004 * 109.08496 * 294.23869 * 8 7 5 37 37 H 1.08996 * 109.03972 * 175.20651 * 8 7 5 38 38 H 1.08998 * 109.88528 * 183.09357 * 9 8 7 39 39 H 1.09005 * 109.94349 * 62.05184 * 9 8 7 40 40 H 0.97002 * 120.00185 * 179.97438 * 18 17 15 41 41 H 1.09007 * 110.69336 * 120.06617 * 23 13 12 42 42 H 1.08995 * 110.69943 * 243.27258 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.1118 -2.1406 0.9705 6 1 1.5734 -2.4071 0.0611 7 6 1.5204 -2.8985 2.1699 8 6 1.6539 -4.4086 1.9975 9 6 3.1131 -4.8170 1.7368 10 6 3.5779 -4.0698 0.5038 11 1 2.8901 -4.2581 -0.3207 12 8 4.9164 -4.2825 0.0696 13 6 5.2147 -3.1662 -0.8070 14 1 4.9881 -3.4338 -1.8390 15 6 6.6685 -2.7897 -0.6821 16 1 6.9433 -1.8048 -0.3342 17 6 7.6479 -3.7023 -1.0120 18 7 8.9166 -3.3739 -0.9025 19 14 7.1726 -5.4055 -1.6144 20 1 7.0542 -6.3255 -0.4548 21 1 8.2155 -5.9110 -2.5428 22 1 5.8704 -5.3339 -2.3245 23 6 4.3215 -1.9814 -0.3561 24 6 3.5678 -2.5544 0.8488 25 1 4.1033 -2.3622 1.7786 26 1 -0.3634 0.4377 -0.9299 27 1 -0.3633 -1.0241 0.0859 28 1 -0.3633 0.5864 0.8440 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.4370 -0.4890 1.9977 34 1 0.4653 -2.6429 2.2677 35 1 2.0456 -2.5955 3.0757 36 1 1.0387 -4.7270 1.1558 37 1 1.3017 -4.9024 2.9031 38 1 3.1720 -5.8914 1.5634 39 1 3.7335 -4.5450 2.5909 40 1 9.6056 -4.0162 -1.1342 41 1 4.9330 -1.1295 -0.0584 42 1 3.6263 -1.7002 -1.1470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252738313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:11 Heat of formation + Delta-G solvation = -81.159310 kcal Electronic energy + Delta-G solvation = -20189.098666 eV Core-core repulsion = 17360.246368 eV Total energy + Delta-G solvation = -2828.852298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.35664 -38.49735 -36.57292 -34.70401 -33.32859 -31.67682 -30.54332 -28.50575 -27.93643 -26.37319 -22.96632 -22.65459 -21.94343 -21.53617 -20.74906 -19.21624 -16.97803 -16.85395 -16.45706 -16.07833 -15.97273 -15.58963 -15.30502 -14.92038 -14.57872 -14.29670 -14.16251 -13.73217 -13.58716 -13.20464 -12.98777 -12.89708 -12.83220 -12.54802 -12.40862 -12.17138 -12.00494 -11.78110 -11.73647 -11.69498 -11.53281 -11.25991 -11.18065 -10.98645 -10.77607 -10.18118 -9.21923 -8.37816 -6.49827 1.31306 1.39730 1.48982 2.34599 2.79695 3.15597 3.36337 3.75458 3.89076 4.01626 4.06264 4.16494 4.26087 4.32631 4.35458 4.44408 4.46635 4.48332 4.55713 4.58998 4.76052 4.80839 4.94021 4.96648 4.98199 5.05211 5.07040 5.15947 5.17866 5.24391 5.26669 5.32245 5.33924 5.43890 5.44983 5.51794 5.57092 6.18321 6.24955 6.37107 6.65616 6.68339 7.25293 8.76760 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.007095 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.367713 B = 3945.227716 C = 4780.222774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 C -0.136 4.136 4 N -0.687 5.687 5 C 0.109 3.891 6 H 0.058 0.942 7 C -0.123 4.123 8 C -0.101 4.101 9 C -0.109 4.109 10 C 0.056 3.944 11 H 0.053 0.947 12 O -0.405 6.405 13 C 0.163 3.837 14 H 0.026 0.974 15 C -0.527 4.527 16 H 0.041 0.959 17 C 0.027 3.973 18 N -0.938 5.938 19 Si 0.965 3.035 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.256 1.256 23 C -0.105 4.105 24 C -0.093 4.093 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.348 0.652 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.269 0.731 41 H 0.049 0.951 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.085 2.395 4.503 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.034 4.034 3 C -0.194 4.194 4 N -0.319 5.319 5 C -0.001 4.001 6 H 0.076 0.924 7 C -0.161 4.161 8 C -0.139 4.139 9 C -0.147 4.147 10 C -0.003 4.003 11 H 0.071 0.929 12 O -0.325 6.325 13 C 0.107 3.893 14 H 0.043 0.957 15 C -0.564 4.564 16 H 0.059 0.941 17 C -0.173 4.173 18 N -0.578 5.578 19 Si 0.791 3.209 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.181 1.181 23 C -0.143 4.143 24 C -0.112 4.112 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.128 2.315 4.393 21.704 hybrid contribution -0.077 -0.636 -0.409 0.760 sum -21.205 1.679 3.984 21.641 Atomic orbital electron populations 1.22434 0.95508 1.02039 1.03076 1.21674 0.93706 0.95431 0.92576 1.21728 1.00596 0.95080 1.01987 1.60472 1.57328 1.07506 1.06555 1.21328 0.92921 0.87539 0.98323 0.92386 1.21907 1.01510 0.95066 0.97591 1.21408 0.93744 0.95536 1.03241 1.21434 0.97720 0.99854 0.95683 1.22754 0.85219 0.95509 0.96781 0.92929 1.88807 1.29379 1.47885 1.66468 1.21159 0.94192 0.84287 0.89621 0.95681 1.21388 0.90348 0.99753 1.44917 0.94108 1.25912 0.94541 1.02723 0.94082 1.70050 1.00799 1.37386 1.49518 0.85413 0.77867 0.79422 0.78229 1.20317 1.21392 1.18063 1.22330 0.97044 0.97290 0.97641 1.22354 0.96649 0.94717 0.97522 0.92176 0.91612 0.92672 0.91419 0.92195 0.94229 0.91581 0.91985 0.83152 0.89424 0.91496 0.91068 0.89144 0.91399 0.92197 0.92196 0.93225 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 9.18 71.98 0.66 -1.96 16 2 C 0.08 1.60 3.00 44.92 0.13 1.74 16 3 C -0.14 -2.84 9.52 71.98 0.69 -2.15 16 4 N -0.69 -15.84 6.10 -470.17 -2.87 -18.71 16 5 C 0.11 2.70 2.00 44.78 0.09 2.79 16 6 H 0.06 1.43 7.23 -2.39 -0.02 1.41 16 7 C -0.12 -2.34 5.00 30.70 0.15 -2.19 16 8 C -0.10 -1.99 5.84 30.71 0.18 -1.81 16 9 C -0.11 -3.17 5.97 30.35 0.18 -2.98 16 10 C 0.06 2.06 2.76 30.93 0.09 2.15 16 11 H 0.05 1.82 7.93 -2.38 -0.02 1.80 16 12 O -0.40 -20.00 9.04 -148.98 -1.35 -21.34 16 13 C 0.16 8.31 2.70 30.56 0.08 8.39 16 14 H 0.03 1.30 7.19 -2.39 -0.02 1.29 16 15 C -0.53 -32.35 9.38 25.60 0.24 -32.11 16 16 H 0.04 2.73 7.60 -2.91 -0.02 2.71 16 17 C 0.03 1.68 5.47 84.65 0.46 2.14 16 18 N -0.94 -60.94 13.96 21.44 0.30 -60.64 16 19 Si 0.96 49.92 26.27 68.60 1.80 51.72 16 20 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 22 H -0.26 -12.64 6.53 99.48 0.65 -11.99 16 23 C -0.11 -4.43 6.21 31.38 0.20 -4.24 16 24 C -0.09 -3.27 2.33 -10.26 -0.02 -3.29 16 25 H 0.06 2.39 8.09 -2.39 -0.02 2.37 16 26 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.05 0.82 7.97 -2.39 -0.02 0.80 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.49 6.58 -2.39 -0.02 1.48 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.35 6.49 7.89 -89.69 -0.71 5.78 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.85 8.09 -2.38 -0.02 1.83 16 40 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 41 H 0.05 2.30 7.43 -2.38 -0.02 2.28 16 42 H 0.07 2.50 6.96 -2.39 -0.02 2.48 16 Total: -1.00 -71.02 318.13 1.22 -69.79 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.21 Total: 12.72 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 3.13 Total: -33.54 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -2.57 Total: -79.35 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.35 Total: -21.34 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 1.80 Total: 51.72 kcal Total: -71.02 1.22 -69.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252738313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.368 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds