Wall clock time and date at job start Mon Mar 30 2020 06:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46905 * 2 1 4 4 O 1.21282 * 120.00186 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99710 * 179.97438 * 3 2 1 6 6 C 1.46503 * 119.99871 * 180.02562 * 5 3 2 7 7 C 1.52991 * 109.47236 * 180.02562 * 6 5 3 8 8 H 1.09003 * 109.47587 * 303.42560 * 7 6 5 9 9 C 1.50700 * 109.47201 * 63.42492 * 7 6 5 10 10 H 1.08000 * 120.00352 * 60.04577 * 9 7 6 11 11 C 1.37874 * 119.99788 * 240.04799 * 9 7 6 12 12 N 1.31526 * 119.99921 * 173.40270 * 11 9 7 13 13 Si 1.86798 * 120.00432 * 353.40147 * 11 9 7 14 14 H 1.48496 * 109.47324 * 84.95986 * 13 11 9 15 15 H 1.48505 * 109.47491 * 204.96372 * 13 11 9 16 16 H 1.48496 * 109.46902 * 324.96072 * 13 11 9 17 17 C 1.52997 * 109.47341 * 183.42539 * 7 6 5 18 18 C 1.53000 * 109.47508 * 179.97438 * 17 7 6 19 19 C 1.53004 * 109.47244 * 179.97438 * 18 17 7 20 20 C 1.52995 * 109.46961 * 60.00184 * 19 18 17 21 21 C 1.53005 * 109.47113 * 299.99637 * 20 19 18 22 22 C 1.52999 * 109.47090 * 59.99773 * 17 7 6 23 23 H 1.09003 * 109.46961 * 59.99846 * 1 2 3 24 24 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47230 * 299.99797 * 1 2 3 26 26 H 1.09007 * 109.47145 * 240.00466 * 2 1 3 27 27 H 1.08995 * 109.47176 * 120.00444 * 2 1 3 28 28 H 0.97000 * 120.00463 * 0.02562 * 5 3 2 29 29 H 1.08998 * 109.47216 * 59.99778 * 6 5 3 30 30 H 1.08997 * 109.46770 * 300.00316 * 6 5 3 31 31 H 0.96994 * 119.99891 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.47226 * 300.00194 * 17 7 6 33 33 H 1.08994 * 109.46947 * 299.99936 * 18 17 7 34 34 H 1.09004 * 109.46891 * 59.99842 * 18 17 7 35 35 H 1.09001 * 109.46988 * 299.99521 * 19 18 17 36 36 H 1.08996 * 109.46785 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47185 * 180.02562 * 20 19 18 38 38 H 1.08994 * 109.47448 * 59.99875 * 20 19 18 39 39 H 1.08994 * 109.47158 * 300.00416 * 21 20 19 40 40 H 1.09004 * 109.47013 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47481 * 300.00111 * 22 17 7 42 42 H 1.08996 * 109.47081 * 60.00764 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0484 0.0011 7 6 5.3756 3.0484 0.0010 8 1 5.7392 2.4820 0.8584 9 6 5.8779 2.4134 -1.2701 10 1 5.6176 2.8411 -2.2270 11 6 6.6698 1.2862 -1.2113 12 7 7.0009 0.6567 -2.3176 13 14 7.2726 0.6532 0.4395 14 1 6.2334 -0.2178 1.0451 15 1 8.5207 -0.1275 0.2447 16 1 7.5428 1.8016 1.3413 17 6 5.8857 4.4883 0.0877 18 6 7.4157 4.4883 0.0883 19 6 7.9256 5.9283 0.1744 20 6 7.4152 6.5737 1.4642 21 6 5.8852 6.5738 1.4637 22 6 5.3757 5.1330 1.3781 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.9878 0.9299 0.0005 29 1 3.4821 3.5620 0.8911 30 1 3.4826 3.5624 -0.8888 31 1 7.5583 -0.1360 -2.2763 32 1 5.5222 5.0548 -0.7697 33 1 7.7787 3.9220 0.9459 34 1 7.7793 4.0288 -0.8309 35 1 7.5626 6.4942 -0.6836 36 1 9.0156 5.9283 0.1743 37 1 7.7781 7.5998 1.5254 38 1 7.7782 6.0078 2.3221 39 1 5.5222 7.1397 0.6058 40 1 5.5215 7.0341 2.3824 41 1 4.2858 5.1331 1.3783 42 1 5.7392 4.5667 2.2355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:14 Heat of formation + Delta-G solvation = -102.125996 kcal Electronic energy + Delta-G solvation = -19711.975240 eV Core-core repulsion = 16882.213758 eV Total energy + Delta-G solvation = -2829.761482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71277 -39.66033 -36.61028 -34.56233 -33.73543 -33.06566 -31.53338 -29.37591 -27.28608 -25.02310 -23.55451 -23.00823 -21.38613 -20.93836 -20.47820 -19.00160 -17.96072 -17.00680 -16.65348 -16.17478 -15.93674 -15.30954 -14.97745 -14.75099 -14.70987 -14.64217 -14.24130 -13.86246 -13.35457 -13.28287 -13.11890 -13.02346 -12.67187 -12.59466 -12.46609 -12.16639 -12.01740 -11.88161 -11.81656 -11.60373 -11.34276 -11.01920 -10.87193 -10.76992 -10.56213 -10.46497 -9.84502 -8.22843 -6.24175 1.32472 1.40958 1.48155 1.74351 2.35743 2.49382 3.11853 3.89574 3.89742 4.01289 4.07034 4.25827 4.26694 4.31006 4.44738 4.55867 4.64026 4.69610 4.74474 4.75718 4.80586 4.85401 4.94126 4.97173 5.01192 5.07519 5.17773 5.24329 5.29037 5.33567 5.35924 5.44021 5.45157 5.53467 5.60784 5.74181 5.77825 5.82867 6.37682 6.70318 6.82301 7.34851 7.39188 8.94169 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.007830 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.963849 B = 3575.119032 C = 4758.400463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.143 4.143 3 C 0.496 3.504 4 O -0.596 6.596 5 N -0.712 5.712 6 C 0.135 3.865 7 C 0.008 3.992 8 H 0.043 0.957 9 C -0.489 4.489 10 H 0.025 0.975 11 C 0.027 3.973 12 N -0.946 5.946 13 Si 0.916 3.084 14 H -0.254 1.254 15 H -0.298 1.298 16 H -0.245 1.245 17 C -0.067 4.067 18 C -0.103 4.103 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.119 4.119 23 H 0.044 0.956 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.403 0.597 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 3.249 10.012 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.183 4.183 3 C 0.285 3.715 4 O -0.478 6.478 5 N -0.361 5.361 6 C 0.011 3.989 7 C -0.011 4.011 8 H 0.061 0.939 9 C -0.527 4.527 10 H 0.043 0.957 11 C -0.170 4.170 12 N -0.586 5.586 13 Si 0.741 3.259 14 H -0.178 1.178 15 H -0.225 1.225 16 H -0.169 1.169 17 C -0.087 4.087 18 C -0.141 4.141 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.152 4.152 22 C -0.156 4.156 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.238 0.762 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.485 3.758 9.938 11.182 hybrid contribution 0.888 -0.878 -0.194 1.263 sum -2.597 2.881 9.745 10.488 Atomic orbital electron populations 1.21490 0.92531 1.02681 1.01986 1.21723 0.98926 0.91659 1.05945 1.21513 0.81884 0.93108 0.75015 1.90602 1.56206 1.48237 1.52797 1.46133 1.07040 1.09875 1.73051 1.21423 0.96284 0.82121 0.99056 1.19471 0.90663 0.95071 0.95928 0.93876 1.20900 1.29929 1.09961 0.91936 0.95670 1.25724 0.96001 0.96364 0.98934 1.70054 1.38810 1.20160 1.29563 0.86239 0.78686 0.79340 0.81626 1.17840 1.22515 1.16903 1.21047 0.95368 0.95440 0.96820 1.21423 0.95495 0.96538 1.00597 1.21551 1.00069 0.95363 0.98461 1.21513 0.95589 1.00789 0.97163 1.21526 0.95839 0.95830 1.01990 1.21733 1.00060 0.96617 0.97198 0.93712 0.89341 0.92938 0.87923 0.86732 0.76153 0.92263 0.95078 0.92729 0.93485 0.93565 0.93808 0.92546 0.91845 0.90649 0.92130 0.92332 0.90749 0.92200 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.20 71.98 0.66 -2.44 16 2 C -0.14 -3.79 6.42 29.85 0.19 -3.59 16 3 C 0.50 18.37 7.83 87.66 0.69 19.06 16 4 O -0.60 -25.93 15.98 -3.03 -0.05 -25.97 16 5 N -0.71 -27.81 5.33 -463.07 -2.47 -30.28 16 6 C 0.14 5.55 4.81 86.38 0.42 5.97 16 7 C 0.01 0.33 1.40 -11.54 -0.02 0.31 16 8 H 0.04 1.79 4.75 -2.39 -0.01 1.78 16 9 C -0.49 -25.29 7.03 25.60 0.18 -25.11 16 10 H 0.02 1.52 8.06 -2.91 -0.02 1.49 16 11 C 0.03 1.43 5.47 84.65 0.46 1.90 16 12 N -0.95 -55.14 13.96 21.45 0.30 -54.84 16 13 Si 0.92 39.70 26.97 68.60 1.85 41.55 16 14 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.25 -9.95 5.89 99.48 0.59 -9.37 16 17 C -0.07 -2.52 1.77 -10.79 -0.02 -2.54 16 18 C -0.10 -3.80 4.96 30.60 0.15 -3.65 16 19 C -0.12 -3.40 5.92 30.59 0.18 -3.22 16 20 C -0.11 -2.73 5.92 30.59 0.18 -2.55 16 21 C -0.11 -2.86 5.93 30.61 0.18 -2.68 16 22 C -0.12 -3.61 4.86 30.61 0.15 -3.46 16 23 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 26 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 27 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.40 15.53 8.17 -92.71 -0.76 14.77 16 29 H 0.06 2.27 6.25 -2.39 -0.01 2.25 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.71 7.27 -2.39 -0.02 1.70 16 34 H 0.04 1.90 7.22 -2.38 -0.02 1.88 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.56 8.14 -2.38 -0.02 1.55 16 41 H 0.06 1.81 6.35 -2.39 -0.02 1.80 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -63.45 324.15 3.14 -60.31 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.10 Total: 31.25 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 3.41 Total: -22.01 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.17 Total: -85.12 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.85 Total: 41.55 kcal Total: -63.45 3.14 -60.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.815 kcal (2) G-P(sol) polarization free energy of solvation -63.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds