Wall clock time and date at job start Mon Mar 30 2020 06:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47046 * 2 1 4 4 O 1.21273 * 120.00170 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99881 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99903 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47223 * 179.97438 * 6 5 3 8 8 H 1.09005 * 109.47013 * 57.63838 * 7 6 5 9 9 C 1.50704 * 109.46966 * 297.64237 * 7 6 5 10 10 H 1.07999 * 120.00273 * 117.17089 * 9 7 6 11 11 C 1.37877 * 119.99867 * 297.16709 * 9 7 6 12 12 N 1.31513 * 119.99686 * 6.34462 * 11 9 7 13 13 Si 1.86799 * 120.00056 * 186.34438 * 11 9 7 14 14 H 1.48498 * 109.46871 * 265.13211 * 13 11 9 15 15 H 1.48505 * 109.46914 * 25.13363 * 13 11 9 16 16 H 1.48500 * 109.47196 * 145.13325 * 13 11 9 17 17 C 1.52991 * 109.47200 * 177.64039 * 7 6 5 18 18 C 1.53002 * 109.47032 * 300.00015 * 17 7 6 19 19 C 1.53001 * 109.47340 * 180.02562 * 18 17 7 20 20 C 1.53004 * 109.47201 * 59.99796 * 19 18 17 21 21 C 1.53002 * 109.47140 * 300.00327 * 20 19 18 22 22 C 1.53000 * 109.46971 * 59.99775 * 21 20 19 23 23 H 1.09001 * 109.47442 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47441 * 300.00209 * 1 2 3 25 25 H 1.09000 * 109.47186 * 60.00336 * 1 2 3 26 26 H 1.08992 * 109.47583 * 239.99619 * 2 1 3 27 27 H 1.09000 * 109.47186 * 119.99664 * 2 1 3 28 28 H 0.97003 * 119.99814 * 359.97438 * 5 3 2 29 29 H 1.08997 * 109.47081 * 59.99963 * 6 5 3 30 30 H 1.09002 * 109.47293 * 299.99722 * 6 5 3 31 31 H 0.97006 * 119.99925 * 180.02562 * 12 11 9 32 32 H 1.08992 * 109.47397 * 59.99746 * 17 7 6 33 33 H 1.09005 * 109.47046 * 300.00117 * 18 17 7 34 34 H 1.08995 * 109.47362 * 60.00443 * 18 17 7 35 35 H 1.08996 * 109.46916 * 300.00196 * 19 18 17 36 36 H 1.08993 * 109.47656 * 179.97438 * 19 18 17 37 37 H 1.08994 * 109.47571 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47013 * 60.00177 * 20 19 18 39 39 H 1.08996 * 109.47276 * 299.99784 * 21 20 19 40 40 H 1.09002 * 109.47147 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46948 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.47190 * 60.00144 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.3757 3.0484 0.0023 8 1 5.7397 2.4984 -0.8656 9 6 5.8771 2.3890 1.2612 10 1 6.4598 1.4817 1.2005 11 6 5.5919 2.9440 2.4907 12 7 4.7802 3.9755 2.5741 13 14 6.3582 2.2310 4.0378 14 1 5.4194 1.2582 4.6521 15 1 7.6270 1.5423 3.6896 16 1 6.6376 3.3256 5.0016 17 6 5.8857 4.4896 -0.0565 18 6 5.3766 5.1589 -1.3347 19 6 5.8872 6.6000 -1.3939 20 6 7.4172 6.5996 -1.3930 21 6 7.9262 5.9302 -0.1148 22 6 7.4157 4.4891 -0.0557 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9877 0.9298 0.0013 29 1 3.4820 3.5619 0.8911 30 1 3.4827 3.5624 -0.8889 31 1 4.5798 4.3663 3.4391 32 1 5.5217 5.0395 0.8112 33 1 5.7406 4.6090 -2.2026 34 1 4.2867 5.1590 -1.3356 35 1 5.5235 7.1502 -0.5261 36 1 5.5249 7.0768 -2.3047 37 1 7.7809 7.6261 -1.4356 38 1 7.7808 6.0493 -2.2609 39 1 7.5626 6.4803 0.7530 40 1 9.0163 5.9294 -0.1144 41 1 7.7787 4.0121 0.8547 42 1 7.7793 3.9389 -0.9236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:17 Heat of formation + Delta-G solvation = -97.302056 kcal Electronic energy + Delta-G solvation = -19841.630890 eV Core-core repulsion = 17012.078590 eV Total energy + Delta-G solvation = -2829.552300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54573 -39.51698 -36.55156 -34.48307 -33.55837 -32.51665 -31.42821 -29.06143 -27.14110 -25.00234 -23.54246 -22.88774 -21.52064 -20.86581 -20.28297 -18.14106 -17.71493 -16.96421 -16.52546 -16.37086 -15.81664 -15.27902 -14.88311 -14.66174 -14.55736 -14.40900 -13.94708 -13.39115 -13.22160 -13.12645 -12.95333 -12.83660 -12.66079 -12.57396 -12.41622 -12.26275 -11.97718 -11.83268 -11.80257 -11.34573 -11.23943 -10.95149 -10.83859 -10.59043 -10.29661 -10.24318 -9.61069 -7.95293 -6.10573 1.39904 1.45963 1.51914 1.89092 2.46880 2.69287 3.27134 4.01143 4.03043 4.12049 4.16688 4.31496 4.32325 4.56444 4.58324 4.73445 4.82489 4.84255 4.86713 4.91564 4.95688 5.00368 5.02578 5.10611 5.12903 5.22939 5.27559 5.36597 5.38852 5.42552 5.55282 5.62186 5.65669 5.75586 5.82736 5.97504 6.02434 6.28327 6.47832 6.86667 7.00445 7.57631 7.57797 9.00618 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.016446 B = 0.007865 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.100601 B = 3559.304589 C = 4837.214593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.487 3.513 4 O -0.610 6.610 5 N -0.701 5.701 6 C 0.131 3.869 7 C 0.043 3.957 8 H 0.024 0.976 9 C -0.512 4.512 10 H 0.053 0.947 11 C 0.036 3.964 12 N -0.897 5.897 13 Si 0.930 3.070 14 H -0.286 1.286 15 H -0.267 1.267 16 H -0.293 1.293 17 C -0.074 4.074 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.091 4.091 23 H 0.090 0.910 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.406 0.594 29 H 0.060 0.940 30 H 0.019 0.981 31 H 0.254 0.746 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -3.358 -6.799 7.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.275 3.725 4 O -0.493 6.493 5 N -0.349 5.349 6 C 0.007 3.993 7 C 0.024 3.976 8 H 0.042 0.958 9 C -0.550 4.550 10 H 0.071 0.929 11 C -0.165 4.165 12 N -0.536 5.536 13 Si 0.758 3.242 14 H -0.212 1.212 15 H -0.191 1.191 16 H -0.219 1.219 17 C -0.093 4.093 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.128 4.128 23 H 0.109 0.891 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.136 0.864 27 H 0.124 0.876 28 H 0.241 0.759 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.272 -2.584 -6.661 7.257 hybrid contribution 0.444 -0.388 1.340 1.464 sum 1.717 -2.972 -5.321 6.332 Atomic orbital electron populations 1.21495 0.93227 1.02553 1.01599 1.21665 0.98391 0.91386 1.06059 1.21636 0.82298 0.93089 0.75455 1.90600 1.56609 1.48733 1.53346 1.46023 1.06635 1.10043 1.72201 1.21423 0.97592 0.81551 0.98744 1.18953 0.89741 0.94063 0.94832 0.95763 1.21170 1.32939 1.09737 0.91190 0.92915 1.25393 0.94986 0.95279 1.00801 1.69934 1.35044 1.24266 1.24350 0.85978 0.79228 0.77890 0.81081 1.21226 1.19142 1.21932 1.20955 0.94670 0.96969 0.96712 1.21659 0.98869 0.96312 0.98304 1.21497 0.96462 0.96235 1.01004 1.21468 0.94902 1.00566 0.97599 1.21536 0.99893 0.96190 0.97791 1.21295 0.95725 0.95606 1.00223 0.89079 0.94273 0.93374 0.86363 0.87627 0.75885 0.92162 0.96296 0.93634 0.91542 0.92576 0.94371 0.93736 0.91257 0.91061 0.91486 0.94066 0.91486 0.93854 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.20 71.98 0.66 -2.70 16 2 C -0.14 -3.62 6.42 29.85 0.19 -3.43 16 3 C 0.49 19.44 7.83 87.66 0.69 20.13 16 4 O -0.61 -29.97 15.98 -3.01 -0.05 -30.02 16 5 N -0.70 -28.67 5.32 -463.06 -2.46 -31.13 16 6 C 0.13 6.20 4.65 86.38 0.40 6.60 16 7 C 0.04 1.95 1.75 -11.54 -0.02 1.93 16 8 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 9 C -0.51 -24.92 6.82 25.60 0.17 -24.74 16 10 H 0.05 2.53 7.82 -2.91 -0.02 2.50 16 11 C 0.04 1.81 5.12 84.65 0.43 2.24 16 12 N -0.90 -48.77 9.38 21.45 0.20 -48.57 16 13 Si 0.93 41.57 29.54 68.60 2.03 43.60 16 14 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 17 C -0.07 -3.16 1.53 -10.80 -0.02 -3.17 16 18 C -0.11 -4.24 4.85 30.60 0.15 -4.09 16 19 C -0.11 -3.62 5.92 30.60 0.18 -3.44 16 20 C -0.11 -3.02 5.92 30.60 0.18 -2.84 16 21 C -0.12 -3.79 5.92 30.59 0.18 -3.61 16 22 C -0.09 -3.51 4.96 30.59 0.15 -3.36 16 23 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.04 1.15 8.10 -2.38 -0.02 1.13 16 25 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 26 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.41 14.60 8.13 -92.71 -0.75 13.84 16 29 H 0.06 3.40 6.00 -2.39 -0.01 3.38 16 30 H 0.02 0.91 6.31 -2.39 -0.02 0.89 16 31 H 0.25 13.68 8.31 -92.70 -0.77 12.91 16 32 H 0.07 3.37 6.10 -2.39 -0.01 3.36 16 33 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.04 1.53 6.38 -2.39 -0.02 1.52 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.87 7.22 -2.39 -0.02 1.85 16 42 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -61.50 322.62 3.30 -58.20 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.23 Total: 28.42 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 3.36 Total: -20.49 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -2.26 Total: -79.70 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.05 Total: -30.02 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -61.50 3.30 -58.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.104 kcal (2) G-P(sol) polarization free energy of solvation -61.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds