Wall clock time and date at job start Mon Mar 30 2020 07:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.49270 * 2 1 4 4 C 1.53090 * 109.47921 * 239.96646 * 2 1 3 5 5 C 1.53174 * 109.16916 * 297.63356 * 4 2 1 6 6 H 1.09006 * 109.61444 * 62.92626 * 5 4 2 7 7 C 1.52997 * 109.54721 * 183.15153 * 5 4 2 8 8 N 1.46899 * 109.47254 * 184.55298 * 7 5 4 9 9 C 1.47449 * 110.99925 * 69.87450 * 8 7 5 10 10 C 1.54311 * 107.23220 * 123.25698 * 9 8 7 11 11 C 1.55140 * 103.02352 * 22.28584 * 10 9 8 12 12 C 1.47840 * 111.00178 * 190.71465 * 8 7 5 13 13 H 1.09005 * 110.37490 * 332.47029 * 12 8 7 14 14 C 1.50706 * 110.37366 * 94.80825 * 12 8 7 15 15 H 1.08003 * 119.99899 * 0.02562 * 14 12 8 16 16 C 1.37871 * 120.00142 * 180.02562 * 14 12 8 17 17 N 1.31516 * 120.00272 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99991 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47461 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47408 * 119.99604 * 18 16 14 21 21 H 1.48501 * 109.47426 * 239.99843 * 18 16 14 22 22 C 1.53177 * 109.03401 * 303.01849 * 5 4 2 23 23 C 1.53094 * 109.16365 * 56.97968 * 22 5 4 24 24 O 1.42902 * 109.47616 * 120.03173 * 2 1 3 25 25 H 1.09004 * 109.46665 * 299.97678 * 1 2 3 26 26 H 1.09002 * 109.46582 * 59.96902 * 1 2 3 27 27 H 1.08997 * 109.47311 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.52569 * 177.72160 * 4 2 1 29 29 H 1.09002 * 109.52006 * 57.53974 * 4 2 1 30 30 H 1.09002 * 109.47153 * 64.55294 * 7 5 4 31 31 H 1.09001 * 109.46832 * 304.55485 * 7 5 4 32 32 H 1.08997 * 109.88742 * 242.66510 * 9 8 7 33 33 H 1.09000 * 109.88557 * 3.85348 * 9 8 7 34 34 H 1.09003 * 110.70864 * 140.66988 * 10 9 8 35 35 H 1.09001 * 110.70797 * 263.89665 * 10 9 8 36 36 H 1.08997 * 110.99089 * 82.43557 * 11 10 9 37 37 H 1.08997 * 110.99212 * 206.21638 * 11 10 9 38 38 H 0.96991 * 120.00674 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.52493 * 176.88130 * 22 5 4 40 40 H 1.08998 * 109.52507 * 297.07650 * 22 5 4 41 41 H 1.09003 * 109.48378 * 62.37267 * 23 22 5 42 42 H 1.09000 * 109.48175 * 182.40711 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 1.5757 -2.1814 -1.2122 6 1 0.4867 -2.2193 -1.2416 7 6 2.1466 -2.9315 -2.4172 8 7 1.6129 -4.2999 -2.4400 9 6 0.1772 -4.3016 -2.7759 10 6 -0.0003 -5.1975 -4.0197 11 6 1.2566 -6.1061 -3.9782 12 6 2.3290 -5.1316 -3.4305 13 1 2.7226 -4.5096 -4.2345 14 6 3.4430 -5.8978 -2.7649 15 1 3.6154 -5.7880 -1.7044 16 6 4.2422 -6.7389 -3.5098 17 7 4.0319 -6.8731 -4.8011 18 14 5.6234 -7.6880 -2.6849 19 1 5.6506 -7.3635 -1.2360 20 1 5.3976 -9.1450 -2.8620 21 1 6.9207 -7.3097 -3.3007 22 6 2.0763 -2.8323 0.0809 23 6 1.5644 -2.0285 1.2790 24 8 2.0065 -0.6743 1.1664 25 1 -0.3633 0.5135 0.8902 26 1 -0.3632 0.5143 -0.8897 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1298 -0.6876 -1.2709 29 1 1.6422 -0.2358 -2.1398 30 1 3.2335 -2.9667 -2.3417 31 1 1.8627 -2.4154 -3.3343 32 1 -0.3981 -4.7054 -1.9428 33 1 -0.1524 -3.2870 -2.9997 34 1 -0.9094 -5.7935 -3.9389 35 1 -0.0118 -4.5967 -4.9291 36 1 1.1090 -6.9460 -3.2994 37 1 1.5190 -6.4553 -4.9768 38 1 4.5938 -7.4651 -5.3250 39 1 1.7034 -3.8547 0.1421 40 1 3.1662 -2.8401 0.0865 41 1 0.4748 -2.0549 1.2958 42 1 1.9528 -2.4623 2.2005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260205438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:42 Heat of formation + Delta-G solvation = -59.805140 kcal Electronic energy + Delta-G solvation = -19984.487244 eV Core-core repulsion = 17156.560932 eV Total energy + Delta-G solvation = -2827.926312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.74474 -37.87455 -34.31812 -32.52693 -32.08487 -30.27738 -28.32162 -28.01279 -25.17288 -24.24478 -23.15976 -21.70656 -19.95691 -19.31842 -18.79114 -16.44042 -16.11797 -15.85726 -15.41169 -14.65557 -14.36786 -14.30339 -14.12956 -13.29143 -13.01258 -12.82443 -12.42658 -12.33796 -12.03915 -11.85124 -11.62752 -11.47625 -11.12298 -11.04162 -10.89837 -10.60951 -10.40979 -10.35329 -10.26092 -10.08123 -9.74752 -9.72913 -9.63743 -9.16915 -8.94545 -8.38314 -7.18761 -5.98754 -3.99170 3.32284 3.40287 3.45631 3.98819 4.44180 4.79054 4.91830 5.02744 5.11266 5.22798 5.32449 5.35189 5.51077 5.57027 5.57865 5.64195 5.69295 5.74076 5.81268 5.94052 6.04038 6.10137 6.10677 6.19119 6.24225 6.35332 6.43685 6.46206 6.57369 6.60888 6.70149 6.82452 7.05138 7.11812 7.38119 7.46808 7.55997 7.90669 8.16336 8.29510 8.56964 9.07878 9.64876 11.10756 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024168 B = 0.006137 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.287432 B = 4561.450295 C = 5285.418408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.089 3.911 3 H 0.095 0.905 4 C -0.146 4.146 5 C -0.081 4.081 6 H 0.066 0.934 7 C 0.065 3.935 8 N -0.522 5.522 9 C 0.046 3.954 10 C -0.152 4.152 11 C -0.103 4.103 12 C 0.209 3.791 13 H 0.011 0.989 14 C -0.490 4.490 15 H 0.064 0.936 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.286 1.286 22 C -0.137 4.137 23 C 0.056 3.944 24 O -0.383 6.383 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.258 0.742 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 10.628 6.570 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.031 3.969 3 H 0.113 0.887 4 C -0.184 4.184 5 C -0.100 4.100 6 H 0.085 0.915 7 C -0.064 4.064 8 N -0.247 5.247 9 C -0.082 4.082 10 C -0.190 4.190 11 C -0.142 4.142 12 C 0.103 3.897 13 H 0.029 0.971 14 C -0.529 4.529 15 H 0.082 0.918 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.175 4.175 23 C -0.021 4.021 24 O -0.302 6.302 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.088 10.412 7.048 14.434 hybrid contribution 0.434 -0.369 -0.829 1.006 sum -6.654 10.043 6.219 13.558 Atomic orbital electron populations 1.22454 0.96810 1.02916 1.02126 1.22101 0.93162 0.96020 0.85627 0.88680 1.22231 1.01951 0.96506 0.97690 1.21210 0.99871 0.93018 0.95929 0.91525 1.22131 1.00221 0.89552 0.94454 1.63592 1.00963 1.09054 1.51050 1.22715 0.91812 0.97293 0.96394 1.22883 0.99884 0.98952 0.97282 1.22616 0.92348 0.97664 1.01574 1.20120 0.91507 0.89709 0.88363 0.97082 1.21090 1.12693 1.23893 0.95226 0.91826 1.24954 0.97596 0.97049 0.94825 1.69967 1.39676 1.38383 1.05658 0.86499 0.81901 0.79637 0.79729 1.19700 1.21167 1.21245 1.22072 1.01783 1.00400 0.93244 1.22671 0.98347 0.82015 0.99039 1.87935 1.73907 1.25300 1.43056 0.92286 0.91777 0.91591 0.91026 0.91460 0.90781 0.96331 0.92264 0.94685 0.92742 0.93073 0.92549 0.91062 0.93183 0.89450 0.91373 0.93424 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 8.65 37.16 0.32 -1.63 16 2 C 0.09 1.06 3.91 -26.68 -0.10 0.96 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.15 -1.90 4.92 -26.59 -0.13 -2.03 16 5 C -0.08 -1.22 1.93 -90.44 -0.17 -1.40 16 6 H 0.07 0.98 5.54 -51.93 -0.29 0.69 16 7 C 0.07 1.21 3.94 -3.83 -0.02 1.20 16 8 N -0.52 -10.93 4.32 -224.75 -0.97 -11.90 16 9 C 0.05 0.85 6.14 -2.84 -0.02 0.83 16 10 C -0.15 -2.88 6.94 -24.91 -0.17 -3.05 16 11 C -0.10 -2.42 5.87 -24.59 -0.14 -2.56 16 12 C 0.21 5.20 2.28 -67.34 -0.15 5.05 16 13 H 0.01 0.31 7.81 -51.93 -0.41 -0.09 16 14 C -0.49 -13.44 8.82 -34.44 -0.30 -13.74 16 15 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 16 C 0.06 1.57 5.34 -17.82 -0.10 1.47 16 17 N -0.90 -25.70 12.27 55.43 0.68 -25.02 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.14 -2.10 5.27 -26.59 -0.14 -2.24 16 23 C 0.06 0.73 6.52 37.21 0.24 0.98 16 24 O -0.38 -5.39 10.60 -35.23 -0.37 -5.77 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.74 4.98 -51.93 -0.26 0.48 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.51 8.07 -51.93 -0.42 1.09 16 31 H 0.02 0.34 7.96 -51.93 -0.41 -0.07 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.58 6.94 -51.93 -0.36 0.22 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 37 H 0.07 1.80 7.57 -51.93 -0.39 1.40 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.09 1.46 7.85 -51.93 -0.41 1.05 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.58 6.34 -51.93 -0.33 0.25 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -28.39 317.24 -9.26 -37.64 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.47 Total: -0.05 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -0.89 Total: -16.17 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.29 Total: -36.92 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.37 Total: -5.77 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.39 -9.26 -37.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260205438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.162 kcal (2) G-P(sol) polarization free energy of solvation -28.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds