Wall clock time and date at job start Mon Mar 30 2020 07:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42906 * 113.99868 * 2 1 4 4 H 1.08997 * 109.50198 * 30.07913 * 3 2 1 5 5 C 1.53036 * 109.50200 * 269.99994 * 3 2 1 6 6 N 1.46850 * 109.52286 * 180.88274 * 5 3 2 7 7 C 1.46901 * 110.99839 * 185.84095 * 6 5 3 8 8 C 1.52998 * 109.47035 * 163.02078 * 7 6 5 9 9 C 1.50697 * 115.56375 * 148.32297 * 8 7 6 10 10 H 1.07997 * 120.00170 * 139.88787 * 9 8 7 11 11 C 1.37875 * 120.00013 * 319.88324 * 9 8 7 12 12 N 1.31522 * 120.00137 * 341.96849 * 11 9 8 13 13 Si 1.86797 * 120.00005 * 161.96283 * 11 9 8 14 14 H 1.48499 * 109.47133 * 60.00474 * 13 11 9 15 15 H 1.48508 * 109.47149 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47231 * 299.99934 * 13 11 9 17 17 C 1.53005 * 117.49601 * 294.01211 * 8 7 6 18 18 C 1.53000 * 117.49818 * 2.63330 * 8 7 6 19 19 C 1.46840 * 111.19844 * 61.73988 * 6 5 3 20 20 C 1.53041 * 109.52576 * 298.25813 * 19 6 5 21 21 C 1.53118 * 109.27525 * 59.18202 * 20 19 6 22 22 H 1.08999 * 109.58185 * 62.28131 * 21 20 19 23 23 C 1.53004 * 109.52397 * 182.44379 * 21 20 19 24 24 H 1.08998 * 109.46774 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46704 * 300.00011 * 1 2 3 26 26 H 1.09003 * 109.46756 * 59.99934 * 1 2 3 27 27 H 1.09003 * 109.46594 * 60.86617 * 5 3 2 28 28 H 1.09000 * 109.46380 * 300.90005 * 5 3 2 29 29 H 1.09000 * 109.47045 * 43.02030 * 7 6 5 30 30 H 1.08997 * 109.46908 * 283.01681 * 7 6 5 31 31 H 0.96991 * 119.99901 * 185.70419 * 12 11 9 32 32 H 1.08993 * 117.50254 * 359.97438 * 17 8 7 33 33 H 1.09003 * 117.49322 * 214.97552 * 17 8 7 34 34 H 1.08997 * 117.50249 * 145.02150 * 18 8 7 35 35 H 1.08997 * 117.51804 * 359.97438 * 18 8 7 36 36 H 1.09002 * 109.46485 * 58.27697 * 19 6 5 37 37 H 1.09001 * 109.46101 * 178.24032 * 19 6 5 38 38 H 1.08998 * 109.50415 * 299.24185 * 20 19 6 39 39 H 1.08996 * 109.50433 * 179.11705 * 20 19 6 40 40 H 1.08996 * 109.47598 * 179.68175 * 23 21 20 41 41 H 1.09001 * 109.46706 * 299.68081 * 23 21 20 42 42 H 1.08995 * 109.47012 * 59.67716 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3461 1.9995 0.5149 5 6 2.2181 1.7723 -1.4426 6 7 2.8348 3.1050 -1.4432 7 6 2.9226 3.6438 -2.8070 8 6 3.1619 5.1537 -2.7444 9 6 3.9780 5.7300 -3.8725 10 1 3.7053 6.6812 -4.3052 11 6 5.0730 5.0431 -4.3521 12 7 5.6206 4.0909 -3.6288 13 14 5.7787 5.4647 -6.0295 14 1 6.2128 6.8847 -6.0412 15 1 6.9440 4.5880 -6.3109 16 1 4.7402 5.2558 -7.0702 17 6 2.0434 6.0227 -2.1658 18 6 3.3229 5.7866 -1.3608 19 6 4.1552 3.0793 -0.8014 20 6 4.0053 2.6516 0.6604 21 6 3.3624 1.2631 0.7173 22 1 4.0127 0.5391 0.2264 23 6 3.1540 0.8556 2.1773 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.2555 1.8173 -1.9520 28 1 2.8707 1.0699 -1.9611 29 1 1.9909 3.4452 -3.3367 30 1 3.7489 3.1665 -3.3336 31 1 6.4388 3.6645 -3.9278 32 1 1.1370 5.5190 -1.8301 33 1 1.8980 7.0114 -2.6011 34 1 4.0192 6.6199 -1.2665 35 1 3.2581 5.1277 -0.4949 36 1 4.7989 2.3709 -1.3229 37 1 4.5997 4.0737 -0.8451 38 1 3.3730 3.3672 1.1859 39 1 4.9873 2.6175 1.1321 40 1 2.6912 -0.1304 2.2169 41 1 4.1170 0.8257 2.6872 42 1 2.5055 1.5814 2.6680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300020354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:13 Heat of formation + Delta-G solvation = -17.372865 kcal Electronic energy + Delta-G solvation = -20224.189980 eV Core-core repulsion = 17398.103670 eV Total energy + Delta-G solvation = -2826.086310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -39.34020 -37.33431 -35.59243 -33.21549 -32.12334 -29.68524 -28.09569 -26.45757 -25.75165 -24.09676 -22.43248 -21.33071 -20.72992 -19.48472 -18.67552 -16.42107 -16.11726 -15.29520 -15.10422 -14.72351 -14.41015 -14.16958 -13.76510 -13.34395 -13.20535 -12.98807 -12.45566 -12.19059 -11.81915 -11.68530 -11.49706 -11.36100 -11.07523 -10.89791 -10.85741 -10.72006 -10.37916 -10.25327 -10.10613 -10.03753 -9.78760 -9.42922 -9.02871 -8.93993 -8.51600 -7.93086 -7.31700 -6.05850 -4.03589 3.28012 3.34077 3.37936 3.85622 4.37360 4.82819 4.97877 5.08438 5.14832 5.29316 5.37792 5.44605 5.58214 5.64393 5.67313 5.70473 5.84209 5.94755 6.00035 6.05443 6.21021 6.24732 6.33425 6.39868 6.42206 6.50137 6.55150 6.69951 6.83605 6.89900 6.91432 7.14982 7.23812 7.35532 7.39675 7.55174 7.60108 7.90529 8.04303 8.13246 8.56626 8.91220 9.51818 10.95927 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.006009 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.736945 B = 4658.575093 C = 4690.588514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.100 3.900 4 H 0.065 0.935 5 C 0.037 3.963 6 N -0.531 5.531 7 C 0.089 3.911 8 C 0.056 3.944 9 C -0.494 4.494 10 H 0.059 0.941 11 C 0.072 3.928 12 N -0.871 5.871 13 Si 0.887 3.113 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.206 4.206 18 C -0.196 4.196 19 C 0.059 3.941 20 C -0.112 4.112 21 C -0.087 4.087 22 H 0.071 0.929 23 C -0.141 4.141 24 H 0.080 0.920 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.261 0.739 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.033 0.967 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -6.702 8.252 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.042 3.958 4 H 0.083 0.917 5 C -0.092 4.092 6 N -0.257 5.257 7 C -0.037 4.037 8 C 0.055 3.945 9 C -0.531 4.531 10 H 0.078 0.922 11 C -0.131 4.131 12 N -0.508 5.508 13 Si 0.714 3.286 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.243 4.243 18 C -0.234 4.234 19 C -0.069 4.069 20 C -0.150 4.150 21 C -0.106 4.106 22 H 0.090 0.910 23 C -0.198 4.198 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.857 -6.768 8.480 12.330 hybrid contribution 0.652 -0.051 -1.402 1.547 sum -5.206 -6.819 7.078 11.122 Atomic orbital electron populations 1.22723 0.81703 1.02032 0.99927 1.87864 1.19145 1.28533 1.95040 1.22165 0.94631 0.83337 0.95662 0.91722 1.22421 0.99384 0.91487 0.95896 1.61956 1.22592 1.19701 1.21462 1.21677 0.99776 0.95904 0.86385 1.18876 0.94686 0.89130 0.91768 1.20548 1.11359 1.05300 1.15929 0.92243 1.24947 0.96353 0.94834 0.96939 1.69942 1.18253 1.25815 1.36794 0.86744 0.78296 0.78308 0.85209 1.20305 1.21344 1.20170 1.22782 0.92592 1.00785 1.08173 1.23089 0.98588 1.03370 0.98313 1.22176 0.89729 1.03453 0.91500 1.21717 1.00014 0.94914 0.98363 1.21248 0.95420 0.98287 0.95640 0.91027 1.21757 1.01155 1.01253 0.95673 0.90186 0.94341 0.94098 0.91868 0.94962 0.94232 0.90156 0.92882 0.91479 0.91658 0.91741 0.89486 0.94902 0.87873 0.91668 0.91649 0.92484 0.92951 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 101.05 1.09 1.47 16 2 O -0.39 -5.77 9.79 -35.23 -0.34 -6.11 16 3 C 0.10 1.55 2.18 -26.65 -0.06 1.49 16 4 H 0.06 1.00 7.79 -51.93 -0.40 0.59 16 5 C 0.04 0.67 5.06 -3.83 -0.02 0.65 16 6 N -0.53 -10.65 3.72 -234.67 -0.87 -11.52 16 7 C 0.09 2.07 4.85 -3.82 -0.02 2.05 16 8 C 0.06 1.38 2.05 -155.66 -0.32 1.06 16 9 C -0.49 -13.33 8.97 -34.44 -0.31 -13.64 16 10 H 0.06 1.62 7.88 -52.49 -0.41 1.21 16 11 C 0.07 1.92 4.99 -17.82 -0.09 1.83 16 12 N -0.87 -23.29 11.32 55.43 0.63 -22.66 16 13 Si 0.89 20.62 29.58 -169.99 -5.03 15.59 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 C -0.21 -4.62 9.94 -26.73 -0.27 -4.88 16 18 C -0.20 -4.49 7.98 -26.73 -0.21 -4.70 16 19 C 0.06 1.17 4.24 -3.84 -0.02 1.15 16 20 C -0.11 -1.79 5.38 -26.65 -0.14 -1.93 16 21 C -0.09 -1.30 2.51 -90.49 -0.23 -1.53 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 23 C -0.14 -1.76 9.08 37.16 0.34 -1.43 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 26 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 27 H 0.06 1.10 7.70 -51.93 -0.40 0.70 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.90 7.85 -51.93 -0.41 0.49 16 30 H 0.08 2.08 5.48 -51.93 -0.28 1.80 16 31 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.09 1.89 5.40 -51.93 -0.28 1.61 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 2.31 5.35 -51.93 -0.28 2.03 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.71 7.76 -51.93 -0.40 0.30 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 322.85 15.07 4.87 4.87 Total: -1.00 -26.72 322.85 -8.49 -35.21 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.49 Total: 3.02 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -0.25 Total: -18.39 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.24 Total: -34.18 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.34 Total: -6.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.72 -8.49 -35.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300020354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.835 kcal (2) G-P(sol) polarization free energy of solvation -26.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds