Wall clock time and date at job start Mon Mar 30 2020 07:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42906 * 113.99868 * 2 1 4 4 H 1.08997 * 109.50198 * 30.07913 * 3 2 1 5 5 C 1.53036 * 109.50200 * 269.99994 * 3 2 1 6 6 N 1.46850 * 109.52286 * 180.88274 * 5 3 2 7 7 C 1.46901 * 110.99839 * 185.84095 * 6 5 3 8 8 C 1.52998 * 109.47035 * 163.02078 * 7 6 5 9 9 C 1.50697 * 115.56375 * 148.32297 * 8 7 6 10 10 H 1.07997 * 120.00170 * 139.88787 * 9 8 7 11 11 C 1.37875 * 120.00013 * 319.88324 * 9 8 7 12 12 N 1.31522 * 120.00137 * 341.96849 * 11 9 8 13 13 Si 1.86797 * 120.00005 * 161.96283 * 11 9 8 14 14 H 1.48499 * 109.47133 * 60.00474 * 13 11 9 15 15 H 1.48508 * 109.47149 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47231 * 299.99934 * 13 11 9 17 17 C 1.53005 * 117.49601 * 294.01211 * 8 7 6 18 18 C 1.53000 * 117.49818 * 2.63330 * 8 7 6 19 19 C 1.46840 * 111.19844 * 61.73988 * 6 5 3 20 20 C 1.53041 * 109.52576 * 298.25813 * 19 6 5 21 21 C 1.53118 * 109.27525 * 59.18202 * 20 19 6 22 22 H 1.08999 * 109.58185 * 62.28131 * 21 20 19 23 23 C 1.53004 * 109.52397 * 182.44379 * 21 20 19 24 24 H 1.08998 * 109.46774 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46704 * 300.00011 * 1 2 3 26 26 H 1.09003 * 109.46756 * 59.99934 * 1 2 3 27 27 H 1.09003 * 109.46594 * 60.86617 * 5 3 2 28 28 H 1.09000 * 109.46380 * 300.90005 * 5 3 2 29 29 H 1.09000 * 109.47045 * 43.02030 * 7 6 5 30 30 H 1.08997 * 109.46908 * 283.01681 * 7 6 5 31 31 H 0.96991 * 119.99901 * 185.70419 * 12 11 9 32 32 H 1.08993 * 117.50254 * 359.97438 * 17 8 7 33 33 H 1.09003 * 117.49322 * 214.97552 * 17 8 7 34 34 H 1.08997 * 117.50249 * 145.02150 * 18 8 7 35 35 H 1.08997 * 117.51804 * 359.97438 * 18 8 7 36 36 H 1.09002 * 109.46485 * 58.27697 * 19 6 5 37 37 H 1.09001 * 109.46101 * 178.24032 * 19 6 5 38 38 H 1.08998 * 109.50415 * 299.24185 * 20 19 6 39 39 H 1.08996 * 109.50433 * 179.11705 * 20 19 6 40 40 H 1.08996 * 109.47598 * 179.68175 * 23 21 20 41 41 H 1.09001 * 109.46706 * 299.68081 * 23 21 20 42 42 H 1.08995 * 109.47012 * 59.67716 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3461 1.9995 0.5149 5 6 2.2181 1.7723 -1.4426 6 7 2.8348 3.1050 -1.4432 7 6 2.9226 3.6438 -2.8070 8 6 3.1619 5.1537 -2.7444 9 6 3.9780 5.7300 -3.8725 10 1 3.7053 6.6812 -4.3052 11 6 5.0730 5.0431 -4.3521 12 7 5.6206 4.0909 -3.6288 13 14 5.7787 5.4647 -6.0295 14 1 6.2128 6.8847 -6.0412 15 1 6.9440 4.5880 -6.3109 16 1 4.7402 5.2558 -7.0702 17 6 2.0434 6.0227 -2.1658 18 6 3.3229 5.7866 -1.3608 19 6 4.1552 3.0793 -0.8014 20 6 4.0053 2.6516 0.6604 21 6 3.3624 1.2631 0.7173 22 1 4.0127 0.5391 0.2264 23 6 3.1540 0.8556 2.1773 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.2555 1.8173 -1.9520 28 1 2.8707 1.0699 -1.9611 29 1 1.9909 3.4452 -3.3367 30 1 3.7489 3.1665 -3.3336 31 1 6.4388 3.6645 -3.9278 32 1 1.1370 5.5190 -1.8301 33 1 1.8980 7.0114 -2.6011 34 1 4.0192 6.6199 -1.2665 35 1 3.2581 5.1277 -0.4949 36 1 4.7989 2.3709 -1.3229 37 1 4.5997 4.0737 -0.8451 38 1 3.3730 3.3672 1.1859 39 1 4.9873 2.6175 1.1321 40 1 2.6912 -0.1304 2.2169 41 1 4.1170 0.8257 2.6872 42 1 2.5055 1.5814 2.6680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300020354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:10 Heat of formation + Delta-G solvation = -31.888973 kcal Electronic energy + Delta-G solvation = -20224.819446 eV Core-core repulsion = 17398.103670 eV Total energy + Delta-G solvation = -2826.715776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -40.74230 -38.85866 -37.05312 -34.65420 -34.13900 -31.06465 -29.49013 -27.75209 -27.43386 -25.69893 -23.82624 -22.83112 -22.43778 -20.92364 -20.47907 -18.14040 -17.54029 -16.69338 -16.49918 -16.42200 -16.02425 -15.63131 -15.13452 -14.97943 -14.53822 -14.30013 -13.97306 -13.57914 -13.38490 -13.26067 -12.86618 -12.82029 -12.65961 -12.62003 -12.37026 -12.24729 -12.01915 -11.80300 -11.64589 -11.42962 -11.30267 -11.10187 -10.89242 -10.46946 -10.32025 -9.83721 -9.04941 -8.07461 -6.12017 1.40502 1.44238 1.50575 2.41834 2.68954 3.02030 3.37220 3.71907 3.78822 3.91257 4.03994 4.28960 4.34925 4.46965 4.51540 4.55308 4.58754 4.62853 4.71369 4.77606 4.79800 4.86512 4.89215 4.93021 4.95010 5.08656 5.09013 5.15788 5.23671 5.28312 5.40748 5.45526 5.49771 5.52139 5.60309 5.76483 5.93766 6.20968 6.25975 6.50076 6.58675 6.88067 7.45048 8.91554 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.006009 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.736945 B = 4658.575093 C = 4690.588514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.110 3.890 4 H 0.073 0.927 5 C 0.038 3.962 6 N -0.524 5.524 7 C 0.099 3.901 8 C 0.028 3.972 9 C -0.520 4.520 10 H 0.048 0.952 11 C 0.034 3.966 12 N -0.886 5.886 13 Si 0.944 3.056 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.274 1.274 17 C -0.189 4.189 18 C -0.186 4.186 19 C 0.067 3.933 20 C -0.102 4.102 21 C -0.086 4.086 22 H 0.057 0.943 23 C -0.132 4.132 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.012 0.988 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.260 0.740 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.005 0.995 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 -7.208 9.561 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.052 3.948 4 H 0.091 0.909 5 C -0.091 4.091 6 N -0.249 5.249 7 C -0.028 4.028 8 C 0.027 3.973 9 C -0.558 4.558 10 H 0.066 0.934 11 C -0.168 4.168 12 N -0.522 5.522 13 Si 0.770 3.230 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.200 1.200 17 C -0.226 4.226 18 C -0.224 4.224 19 C -0.060 4.060 20 C -0.140 4.140 21 C -0.105 4.105 22 H 0.076 0.924 23 C -0.190 4.190 24 H 0.119 0.881 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.031 0.969 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.023 0.977 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.851 -7.278 9.798 13.996 hybrid contribution 0.925 0.088 -1.833 2.055 sum -5.926 -7.189 7.966 12.258 Atomic orbital electron populations 1.22962 0.79845 1.03708 1.00567 1.87854 1.21196 1.27816 1.94979 1.22004 0.95269 0.83985 0.93570 0.90889 1.22497 0.98760 0.89806 0.98065 1.61952 1.22590 1.20980 1.19390 1.21410 0.98340 0.95217 0.87851 1.18964 0.96178 0.90075 0.92055 1.20780 1.12281 1.05396 1.17347 0.93362 1.25547 0.96702 0.94924 0.99586 1.70057 1.18251 1.26218 1.37712 0.85842 0.77612 0.78062 0.81470 1.20026 1.20992 1.19977 1.22780 0.92636 1.00375 1.06806 1.22989 0.98637 1.02749 0.97975 1.22034 0.88968 1.01132 0.93901 1.21645 1.01324 0.95763 0.95286 1.21218 0.94714 0.97105 0.97457 0.92449 1.21679 1.02183 1.01546 0.93558 0.88118 0.92849 0.94257 0.91402 0.96937 0.94280 0.93295 0.93060 0.89844 0.91562 0.93064 0.88259 0.97697 0.90614 0.90739 0.90151 0.92237 0.91695 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.82 113.37 1.23 1.74 16 2 O -0.40 -11.06 9.79 -148.98 -1.46 -12.52 16 3 C 0.11 3.21 2.18 30.65 0.07 3.27 16 4 H 0.07 2.04 7.79 -2.39 -0.02 2.02 16 5 C 0.04 1.33 5.06 86.32 0.44 1.77 16 6 N -0.52 -20.96 3.72 -896.36 -3.33 -24.29 16 7 C 0.10 4.70 4.85 86.30 0.42 5.12 16 8 C 0.03 1.40 2.05 -52.93 -0.11 1.29 16 9 C -0.52 -28.60 8.97 25.60 0.23 -28.37 16 10 H 0.05 2.68 7.88 -2.91 -0.02 2.66 16 11 C 0.03 1.84 4.99 84.65 0.42 2.26 16 12 N -0.89 -48.53 11.32 21.45 0.24 -48.29 16 13 Si 0.94 42.88 29.58 68.60 2.03 44.91 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 C -0.19 -8.29 9.94 30.60 0.30 -7.99 16 18 C -0.19 -8.48 7.98 30.60 0.24 -8.23 16 19 C 0.07 2.70 4.24 86.33 0.37 3.06 16 20 C -0.10 -3.10 5.38 30.65 0.16 -2.94 16 21 C -0.09 -2.42 2.51 -10.71 -0.03 -2.44 16 22 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 23 C -0.13 -2.90 9.08 71.98 0.65 -2.24 16 24 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 0.93 8.09 -2.39 -0.02 0.91 16 26 H 0.04 0.81 7.89 -2.39 -0.02 0.79 16 27 H 0.07 2.31 7.70 -2.39 -0.02 2.29 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.04 1.79 7.85 -2.39 -0.02 1.77 16 30 H 0.05 2.63 5.48 -2.39 -0.01 2.62 16 31 H 0.26 13.77 8.32 -92.72 -0.77 13.00 16 32 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.10 4.24 5.40 -2.39 -0.01 4.23 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.08 3.45 5.35 -2.39 -0.01 3.44 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 1.29 7.76 -2.39 -0.02 1.27 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -57.50 322.85 2.84 -54.65 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.96 Total: 19.26 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 4.40 Total: -33.72 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -3.09 Total: -72.58 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.46 Total: -12.52 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -57.50 2.84 -54.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300020354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.765 kcal (2) G-P(sol) polarization free energy of solvation -57.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds