Wall clock time and date at job start Mon Mar 30 2020 07:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.32642 * 2 1 4 4 C 1.54481 * 110.37382 * 237.75467 * 2 1 3 5 5 C 1.54505 * 104.06244 * 217.19212 * 4 2 1 6 6 C 1.54485 * 104.06223 * 359.97438 * 5 4 2 7 7 H 1.09004 * 110.37197 * 265.04251 * 6 5 4 8 8 C 1.52999 * 110.37167 * 142.81676 * 6 5 4 9 9 H 1.08995 * 115.55178 * 34.27818 * 8 6 5 10 10 C 1.52999 * 117.49512 * 248.60718 * 8 6 5 11 11 C 1.52998 * 60.00296 * 252.50996 * 10 8 6 12 12 H 1.09002 * 117.49779 * 107.48624 * 11 10 8 13 13 N 1.46895 * 117.50131 * 252.51296 * 11 10 8 14 14 C 1.46894 * 111.00129 * 223.61945 * 13 11 10 15 15 C 1.52996 * 109.47246 * 179.97438 * 14 13 11 16 16 C 1.53009 * 109.47211 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46947 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00546 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99650 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99729 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99987 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47094 * 90.00300 * 21 19 17 23 23 H 1.48507 * 109.46827 * 210.00255 * 21 19 17 24 24 H 1.48496 * 109.47044 * 329.99884 * 21 19 17 25 25 O 1.44421 * 110.37080 * 122.36761 * 2 1 3 26 26 H 1.09001 * 109.47002 * 182.24613 * 1 2 3 27 27 H 1.08993 * 109.46955 * 302.25051 * 1 2 3 28 28 H 1.09000 * 109.47050 * 62.24879 * 1 2 3 29 29 H 1.09004 * 110.50887 * 335.83187 * 4 2 1 30 30 H 1.08996 * 110.51412 * 98.40478 * 4 2 1 31 31 H 1.08993 * 110.51996 * 118.63978 * 5 4 2 32 32 H 1.09004 * 110.51058 * 241.22207 * 5 4 2 33 33 H 1.09003 * 117.50165 * 0.02562 * 10 8 6 34 34 H 1.08998 * 117.50073 * 144.99801 * 10 8 6 35 35 H 1.00903 * 110.99802 * 347.57313 * 13 11 10 36 36 H 1.08997 * 109.47363 * 299.99919 * 14 13 11 37 37 H 1.09001 * 109.47241 * 59.99975 * 14 13 11 38 38 H 1.09000 * 109.47316 * 299.99863 * 15 14 13 39 39 H 1.09003 * 109.47415 * 60.00397 * 15 14 13 40 40 H 1.09000 * 109.46908 * 300.00161 * 16 15 14 41 41 H 1.08995 * 109.46860 * 60.00068 * 16 15 14 42 42 H 0.97006 * 119.99275 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0679 -0.7727 -1.2248 5 6 3.3178 -1.5049 -0.6875 6 6 3.3877 -1.0875 0.7982 7 1 4.0545 -0.2340 0.9216 8 6 3.8606 -2.2604 1.6593 9 1 4.5853 -2.9258 1.1903 10 6 2.8471 -2.8847 2.6206 11 6 3.9889 -2.0244 3.1656 12 1 3.7365 -1.0335 3.5430 13 7 5.0798 -2.7118 3.8693 14 6 5.4571 -1.9878 5.0905 15 6 6.5930 -2.7327 5.7946 16 6 6.9864 -1.9782 7.0663 17 6 8.1056 -2.7116 7.7595 18 1 8.4969 -3.6247 7.3359 19 6 8.6294 -2.2174 8.9353 20 7 9.6057 -2.8577 9.5406 21 14 7.9521 -0.6384 9.6686 22 1 6.8349 -0.9609 10.5921 23 1 9.0274 0.0605 10.4174 24 1 7.4560 0.2403 8.5791 25 8 2.0328 -0.7248 1.1435 26 1 -0.3633 -1.0269 0.0403 27 1 -0.3633 0.5484 0.8691 28 1 -0.3633 0.4785 -0.9095 29 1 1.3276 -1.4902 -1.5789 30 1 2.3407 -0.0819 -2.0225 31 1 3.1957 -2.5844 -0.7759 32 1 4.2107 -1.1776 -1.2203 33 1 1.8433 -2.4601 2.6392 34 1 2.9051 -3.9608 2.7840 35 1 4.8303 -3.6670 4.0777 36 1 5.7883 -0.9827 4.8293 37 1 4.5965 -1.9252 5.7564 38 1 6.2614 -3.7376 6.0559 39 1 7.4538 -2.7956 5.1290 40 1 7.3181 -0.9734 6.8046 41 1 6.1258 -1.9149 7.7321 42 1 9.9744 -2.5098 10.3676 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309400570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:27 Heat of formation + Delta-G solvation = -61.689354 kcal Electronic energy + Delta-G solvation = -18233.169335 eV Core-core repulsion = 15405.161317 eV Total energy + Delta-G solvation = -2828.008017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79117 -38.70852 -36.52034 -34.74647 -33.17767 -32.82764 -31.74184 -28.26811 -27.04432 -24.02019 -23.57734 -22.42602 -21.85872 -21.69625 -21.14692 -18.91153 -17.38343 -17.01364 -16.70306 -16.50725 -16.35242 -15.93972 -15.27526 -14.77732 -14.66701 -14.34452 -13.98880 -13.84009 -13.51813 -13.27764 -13.06589 -12.91313 -12.76431 -12.48376 -12.42234 -12.29188 -11.95181 -11.84048 -11.68348 -11.60531 -11.49579 -11.32713 -11.27914 -10.99606 -10.76529 -10.58203 -9.14671 -8.29616 -6.33922 1.35787 1.37989 1.50415 2.36458 2.71371 2.93437 3.05539 3.10494 3.69526 3.77904 3.96517 4.00342 4.04283 4.12585 4.20332 4.33024 4.35106 4.46497 4.54434 4.56996 4.62010 4.67171 4.75832 4.87367 4.92851 4.96295 4.97874 5.00731 5.07886 5.11394 5.17533 5.21386 5.28438 5.33124 5.51232 5.60078 5.65996 6.01130 6.10968 6.29245 6.42723 6.74271 7.30635 8.87392 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.043338 B = 0.003010 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.932348 B = 9301.325503 C = 9598.858201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 H 0.069 0.931 4 C -0.146 4.146 5 C -0.144 4.144 6 C 0.103 3.897 7 H 0.068 0.932 8 C -0.138 4.138 9 H 0.119 0.881 10 C -0.176 4.176 11 C 0.020 3.980 12 H 0.100 0.900 13 N -0.664 5.664 14 C 0.072 3.928 15 C -0.091 4.091 16 C -0.010 4.010 17 C -0.534 4.534 18 H 0.030 0.970 19 C 0.001 3.999 20 N -0.953 5.953 21 Si 0.954 3.046 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.246 1.246 25 O -0.388 6.388 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.346 0.654 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.880 6.300 -23.308 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.002 3.998 3 H 0.087 0.913 4 C -0.183 4.183 5 C -0.182 4.182 6 C 0.045 3.955 7 H 0.085 0.915 8 C -0.157 4.157 9 H 0.137 0.863 10 C -0.214 4.214 11 C -0.090 4.090 12 H 0.118 0.882 13 N -0.293 5.293 14 C -0.057 4.057 15 C -0.129 4.129 16 C -0.048 4.048 17 C -0.572 4.572 18 H 0.048 0.952 19 C -0.196 4.196 20 N -0.593 5.593 21 Si 0.777 3.223 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.170 1.170 25 O -0.308 6.308 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.165 0.835 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.379 6.538 -23.336 31.030 hybrid contribution -0.243 0.081 1.187 1.214 sum -19.622 6.618 -22.149 30.322 Atomic orbital electron populations 1.21803 0.92463 1.02746 1.03050 1.23160 0.96016 0.95501 0.85136 0.91276 1.22989 0.97405 0.99926 0.98020 1.22922 0.99311 1.01806 0.94167 1.22432 0.84022 0.95247 0.93810 0.91455 1.22644 1.02021 0.99803 0.91221 0.86271 1.23355 0.95509 0.99115 1.03449 1.22465 0.92973 0.98524 0.95061 0.88231 1.60182 1.38712 1.05834 1.24620 1.21912 0.96560 0.97735 0.89446 1.21271 0.97270 0.98485 0.95859 1.19489 0.94947 0.96072 0.94307 1.21517 1.18353 1.09605 1.07739 0.95164 1.26078 0.94946 1.01258 0.97274 1.70081 1.28043 1.42045 1.19179 0.85596 0.78284 0.79345 0.79043 1.19069 1.20888 1.16964 1.89122 1.27357 1.74694 1.39635 0.92256 0.92558 0.89289 0.90165 0.89085 0.90447 0.89407 0.88219 0.88173 0.83495 0.91338 0.94896 0.93297 0.93168 0.96157 0.96288 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.52 71.98 0.69 -1.05 16 2 C 0.06 0.88 3.92 31.10 0.12 1.00 16 3 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.15 -1.70 6.63 31.61 0.21 -1.49 16 5 C -0.14 -2.02 6.62 31.61 0.21 -1.81 16 6 C 0.10 1.94 3.64 31.10 0.11 2.06 16 7 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 8 C -0.14 -2.90 5.53 -10.79 -0.06 -2.96 16 9 H 0.12 2.46 8.13 -2.39 -0.02 2.44 16 10 C -0.18 -3.75 9.59 30.59 0.29 -3.46 16 11 C 0.02 0.51 6.03 44.92 0.27 0.78 16 12 H 0.10 2.63 7.90 -2.39 -0.02 2.62 16 13 N -0.66 -18.79 6.78 -491.60 -3.33 -22.12 16 14 C 0.07 2.36 5.54 86.30 0.48 2.83 16 15 C -0.09 -3.67 5.41 30.60 0.17 -3.50 16 16 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 17 C -0.53 -31.85 9.66 25.60 0.25 -31.60 16 18 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 19 C 0.00 0.05 5.47 84.66 0.46 0.52 16 20 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 21 Si 0.95 45.18 27.47 68.60 1.88 47.06 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 25 O -0.39 -8.11 9.47 -148.98 -1.41 -9.52 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.86 7.87 -2.39 -0.02 0.84 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 1.09 7.87 -2.39 -0.02 1.07 16 32 H 0.09 1.02 8.14 -2.38 -0.02 1.01 16 33 H 0.10 2.23 7.06 -2.39 -0.02 2.21 16 34 H 0.10 1.96 8.09 -2.39 -0.02 1.94 16 35 H 0.35 9.13 8.52 -89.69 -0.76 8.37 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 41 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 42 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 Total: -1.00 -67.48 336.10 0.90 -66.57 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.15 Total: 17.90 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 3.32 Total: -39.05 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -3.03 Total: -82.97 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -1.41 Total: -9.52 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -67.48 0.90 -66.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309400570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.884 kcal (2) G-P(sol) polarization free energy of solvation -67.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds