Wall clock time and date at job start Mon Mar 30 2020 07:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.48194 * 2 1 4 4 C 1.53089 * 109.48406 * 120.02493 * 2 1 3 5 5 C 1.53179 * 109.16346 * 62.38785 * 4 2 1 6 6 H 1.08996 * 109.53971 * 297.02243 * 5 4 2 7 7 C 1.53007 * 109.54116 * 176.85117 * 5 4 2 8 8 N 1.46895 * 109.46633 * 175.36941 * 7 5 4 9 9 C 1.46903 * 110.99755 * 182.21346 * 8 7 5 10 10 C 1.53010 * 109.47158 * 174.23357 * 9 8 7 11 11 C 1.50703 * 115.56036 * 39.54784 * 10 9 8 12 12 H 1.08001 * 119.99704 * 266.09965 * 11 10 9 13 13 C 1.37874 * 119.99733 * 86.10033 * 11 10 9 14 14 N 1.31517 * 119.99676 * 181.22612 * 13 11 10 15 15 Si 1.86794 * 120.00371 * 1.22651 * 13 11 10 16 16 H 1.48507 * 109.47133 * 88.90090 * 15 13 11 17 17 H 1.48503 * 109.47570 * 208.90056 * 15 13 11 18 18 H 1.48500 * 109.47224 * 328.89942 * 15 13 11 19 19 C 1.53000 * 117.49692 * 185.23685 * 10 9 8 20 20 C 1.52996 * 117.49722 * 253.85858 * 10 9 8 21 21 C 1.53173 * 109.03626 * 56.98211 * 5 4 2 22 22 C 1.53087 * 109.16276 * 303.02040 * 21 5 4 23 23 O 1.42902 * 109.41728 * 57.61101 * 22 21 5 24 24 H 1.09001 * 109.47284 * 299.97048 * 1 2 3 25 25 H 1.08993 * 109.47625 * 59.97851 * 1 2 3 26 26 H 1.09004 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.52518 * 302.47676 * 4 2 1 28 28 H 1.09003 * 109.52694 * 182.29149 * 4 2 1 29 29 H 1.09003 * 109.47095 * 55.36916 * 7 5 4 30 30 H 1.09000 * 109.46904 * 295.36584 * 7 5 4 31 31 H 1.00901 * 111.00606 * 58.26063 * 8 7 5 32 32 H 1.08995 * 109.47096 * 54.23450 * 9 8 7 33 33 H 1.08998 * 109.47308 * 294.22775 * 9 8 7 34 34 H 0.97001 * 119.99842 * 179.97438 * 14 13 11 35 35 H 1.08995 * 117.49882 * 0.02562 * 19 10 9 36 36 H 1.08999 * 117.49694 * 214.97470 * 19 10 9 37 37 H 1.08999 * 117.49754 * 145.01817 * 20 10 9 38 38 H 1.09000 * 117.51806 * 359.97438 * 20 10 9 39 39 H 1.08991 * 109.52399 * 62.92572 * 21 5 4 40 40 H 1.08998 * 109.51693 * 183.11512 * 21 5 4 41 41 H 1.09011 * 109.48097 * 297.62769 * 22 21 5 42 42 H 1.09002 * 109.49285 * 177.59871 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7222 1.2495 5 6 1.5760 -2.1813 1.2121 6 1 0.4871 -2.2182 1.2423 7 6 2.1471 -2.9313 2.4173 8 7 1.6123 -4.2992 2.4410 9 6 2.0988 -5.0344 3.6161 10 6 1.4111 -6.3995 3.6844 11 6 1.2190 -7.0976 2.3627 12 1 0.2915 -6.9830 1.8213 13 6 2.2271 -7.8826 1.8447 14 7 2.0687 -8.4723 0.6799 15 14 3.8180 -8.1085 2.7972 16 1 3.6874 -9.2726 3.7100 17 1 4.9342 -8.3472 1.8472 18 1 4.0973 -6.8853 3.5916 19 6 1.6923 -7.2716 4.9097 20 6 0.3301 -6.5935 4.7496 21 6 2.0770 -2.8321 -0.0809 22 6 1.5650 -2.0284 -1.2790 23 8 2.0068 -0.6741 -1.1664 24 1 -0.3634 0.5134 0.8902 25 1 -0.3634 0.5141 -0.8897 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6420 -0.2357 2.1399 28 1 3.1298 -0.6871 1.2710 29 1 1.8640 -2.4145 3.3343 30 1 3.2338 -2.9673 2.3412 31 1 1.8372 -4.7903 1.5887 32 1 1.8715 -4.4676 4.5189 33 1 3.1768 -5.1743 3.5366 34 1 2.7781 -9.0243 0.3152 35 1 2.3667 -6.8727 5.6673 36 1 1.7381 -8.3503 4.7598 37 1 -0.5201 -7.2260 4.4944 38 1 0.1089 -5.7490 5.4021 39 1 3.1669 -2.8396 -0.0863 40 1 1.7044 -3.8546 -0.1420 41 1 0.4754 -2.0552 -1.2958 42 1 1.9535 -2.4620 -2.2006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309749195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:56 Heat of formation + Delta-G solvation = -35.219410 kcal Electronic energy + Delta-G solvation = -19600.780713 eV Core-core repulsion = 16773.920519 eV Total energy + Delta-G solvation = -2826.860194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.79080 -37.35524 -35.47898 -32.78638 -32.07184 -31.85358 -28.54123 -26.67121 -25.35653 -23.50219 -23.33050 -21.57257 -21.14496 -19.15906 -18.86509 -16.46862 -16.04824 -15.94007 -15.50699 -14.86007 -14.51607 -14.31669 -14.04978 -13.72987 -13.18596 -13.01151 -12.78172 -12.69215 -12.22089 -11.91836 -11.81920 -11.64589 -11.39460 -11.15839 -11.07115 -10.80568 -10.54805 -10.40132 -10.30261 -10.05078 -9.87879 -9.51983 -9.28941 -8.99396 -8.60620 -8.40862 -7.51459 -6.09389 -4.10197 3.28157 3.37774 3.41873 3.91013 4.42578 4.60224 4.81632 4.89783 4.94736 5.04988 5.14836 5.20732 5.29211 5.40828 5.50081 5.55390 5.62192 5.70039 5.74802 5.88161 5.94619 5.98344 6.03480 6.06660 6.14259 6.20284 6.21865 6.30021 6.36328 6.46198 6.52864 6.56316 6.63846 6.79339 7.06987 7.18731 7.29546 7.77956 7.92192 8.28984 8.58426 8.97940 9.54395 11.02148 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.005637 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.055468 B = 4965.698424 C = 5431.472973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.088 3.912 3 H 0.096 0.904 4 C -0.144 4.144 5 C -0.085 4.085 6 H 0.083 0.917 7 C 0.063 3.937 8 N -0.673 5.673 9 C 0.096 3.904 10 C 0.008 3.992 11 C -0.474 4.474 12 H 0.080 0.920 13 C 0.074 3.926 14 N -0.899 5.899 15 Si 0.875 3.125 16 H -0.279 1.279 17 H -0.297 1.297 18 H -0.260 1.260 19 C -0.209 4.209 20 C -0.175 4.175 21 C -0.154 4.154 22 C 0.059 3.941 23 O -0.382 6.382 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.357 0.643 32 H 0.046 0.954 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 14.690 0.735 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.030 3.970 3 H 0.114 0.886 4 C -0.182 4.182 5 C -0.104 4.104 6 H 0.101 0.899 7 C -0.067 4.067 8 N -0.307 5.307 9 C -0.033 4.033 10 C 0.007 3.993 11 C -0.511 4.511 12 H 0.098 0.902 13 C -0.128 4.128 14 N -0.537 5.537 15 Si 0.704 3.296 16 H -0.205 1.205 17 H -0.224 1.224 18 H -0.184 1.184 19 C -0.247 4.247 20 C -0.212 4.212 21 C -0.192 4.192 22 C -0.018 4.018 23 O -0.302 6.302 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.179 0.821 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.437 14.828 0.746 14.853 hybrid contribution 1.718 -0.659 0.566 1.925 sum 1.281 14.169 1.311 14.287 Atomic orbital electron populations 1.22460 0.96496 1.03227 1.02268 1.22112 0.93440 0.95995 0.85448 0.88619 1.22213 1.01556 0.96315 0.98090 1.21199 1.01334 0.93244 0.94577 0.89908 1.21941 0.95850 0.91666 0.97254 1.60348 1.62271 1.01179 1.06918 1.21582 0.95700 0.94075 0.91978 1.19392 0.97217 0.92218 0.90492 1.20254 1.02697 1.26789 1.01401 0.90186 1.24981 0.98092 0.95069 0.94612 1.69898 1.33741 1.32247 1.17787 0.86951 0.83428 0.79471 0.79798 1.20499 1.22390 1.18428 1.22985 0.99647 0.99254 1.02808 1.22778 0.92470 1.01822 1.04134 1.22262 1.01504 1.00802 0.94652 1.22590 0.98864 0.81749 0.98555 1.87947 1.73876 1.25224 1.43107 0.91649 0.92192 0.91324 0.91104 0.91385 0.92010 0.96431 0.82064 0.93577 0.96206 0.92704 0.91335 0.89636 0.89832 0.91183 0.91605 0.89555 0.92787 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 8.65 37.15 0.32 -1.57 16 2 C 0.09 0.98 3.91 -26.69 -0.10 0.88 16 3 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -1.66 4.92 -26.59 -0.13 -1.79 16 5 C -0.08 -1.17 2.17 -90.43 -0.20 -1.36 16 6 H 0.08 1.18 6.62 -51.93 -0.34 0.84 16 7 C 0.06 0.99 5.14 -3.82 -0.02 0.97 16 8 N -0.67 -13.12 6.23 -113.77 -0.71 -13.83 16 9 C 0.10 2.00 5.63 -3.82 -0.02 1.97 16 10 C 0.01 0.18 1.22 -155.66 -0.19 -0.01 16 11 C -0.47 -12.73 8.08 -34.44 -0.28 -13.01 16 12 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 15 Si 0.87 21.44 25.05 -169.99 -4.26 17.18 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.26 -6.09 5.41 56.52 0.31 -5.78 16 19 C -0.21 -4.50 7.60 -26.73 -0.20 -4.70 16 20 C -0.17 -3.63 9.88 -26.73 -0.26 -3.90 16 21 C -0.15 -2.21 5.11 -26.60 -0.14 -2.35 16 22 C 0.06 0.76 6.51 37.20 0.24 1.00 16 23 O -0.38 -5.15 10.60 -35.23 -0.37 -5.52 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.76 4.98 -51.93 -0.26 0.50 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.36 7.61 6.15 -39.29 -0.24 7.37 16 32 H 0.05 0.88 7.91 -51.93 -0.41 0.47 16 33 H 0.02 0.43 6.38 -51.93 -0.33 0.10 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.94 7.20 -51.93 -0.37 1.56 16 37 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 38 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.39 6.89 -51.93 -0.36 1.03 16 41 H 0.05 0.66 6.34 -51.92 -0.33 0.34 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 316.23 15.07 4.77 4.77 Total: -1.00 -28.52 316.23 -8.25 -36.77 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.37 Total: 8.30 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -1.08 Total: -21.91 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.06 Total: -39.59 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.37 Total: -5.52 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.26 Total: 17.18 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.52 -8.25 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309749195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.551 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds