Wall clock time and date at job start Mon Mar 30 2020 07:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.48194 * 2 1 4 4 C 1.53089 * 109.48406 * 120.02493 * 2 1 3 5 5 C 1.53179 * 109.16346 * 62.38785 * 4 2 1 6 6 H 1.08996 * 109.53971 * 297.02243 * 5 4 2 7 7 C 1.53007 * 109.54116 * 176.85117 * 5 4 2 8 8 N 1.46895 * 109.46633 * 175.36941 * 7 5 4 9 9 C 1.46903 * 110.99755 * 182.21346 * 8 7 5 10 10 C 1.53010 * 109.47158 * 174.23357 * 9 8 7 11 11 C 1.50703 * 115.56036 * 39.54784 * 10 9 8 12 12 H 1.08001 * 119.99704 * 266.09965 * 11 10 9 13 13 C 1.37874 * 119.99733 * 86.10033 * 11 10 9 14 14 N 1.31517 * 119.99676 * 181.22612 * 13 11 10 15 15 Si 1.86794 * 120.00371 * 1.22651 * 13 11 10 16 16 H 1.48507 * 109.47133 * 88.90090 * 15 13 11 17 17 H 1.48503 * 109.47570 * 208.90056 * 15 13 11 18 18 H 1.48500 * 109.47224 * 328.89942 * 15 13 11 19 19 C 1.53000 * 117.49692 * 185.23685 * 10 9 8 20 20 C 1.52996 * 117.49722 * 253.85858 * 10 9 8 21 21 C 1.53173 * 109.03626 * 56.98211 * 5 4 2 22 22 C 1.53087 * 109.16276 * 303.02040 * 21 5 4 23 23 O 1.42902 * 109.41728 * 57.61101 * 22 21 5 24 24 H 1.09001 * 109.47284 * 299.97048 * 1 2 3 25 25 H 1.08993 * 109.47625 * 59.97851 * 1 2 3 26 26 H 1.09004 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.52518 * 302.47676 * 4 2 1 28 28 H 1.09003 * 109.52694 * 182.29149 * 4 2 1 29 29 H 1.09003 * 109.47095 * 55.36916 * 7 5 4 30 30 H 1.09000 * 109.46904 * 295.36584 * 7 5 4 31 31 H 1.00901 * 111.00606 * 58.26063 * 8 7 5 32 32 H 1.08995 * 109.47096 * 54.23450 * 9 8 7 33 33 H 1.08998 * 109.47308 * 294.22775 * 9 8 7 34 34 H 0.97001 * 119.99842 * 179.97438 * 14 13 11 35 35 H 1.08995 * 117.49882 * 0.02562 * 19 10 9 36 36 H 1.08999 * 117.49694 * 214.97470 * 19 10 9 37 37 H 1.08999 * 117.49754 * 145.01817 * 20 10 9 38 38 H 1.09000 * 117.51806 * 359.97438 * 20 10 9 39 39 H 1.08991 * 109.52399 * 62.92572 * 21 5 4 40 40 H 1.08998 * 109.51693 * 183.11512 * 21 5 4 41 41 H 1.09011 * 109.48097 * 297.62769 * 22 21 5 42 42 H 1.09002 * 109.49285 * 177.59871 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7222 1.2495 5 6 1.5760 -2.1813 1.2121 6 1 0.4871 -2.2182 1.2423 7 6 2.1471 -2.9313 2.4173 8 7 1.6123 -4.2992 2.4410 9 6 2.0988 -5.0344 3.6161 10 6 1.4111 -6.3995 3.6844 11 6 1.2190 -7.0976 2.3627 12 1 0.2915 -6.9830 1.8213 13 6 2.2271 -7.8826 1.8447 14 7 2.0687 -8.4723 0.6799 15 14 3.8180 -8.1085 2.7972 16 1 3.6874 -9.2726 3.7100 17 1 4.9342 -8.3472 1.8472 18 1 4.0973 -6.8853 3.5916 19 6 1.6923 -7.2716 4.9097 20 6 0.3301 -6.5935 4.7496 21 6 2.0770 -2.8321 -0.0809 22 6 1.5650 -2.0284 -1.2790 23 8 2.0068 -0.6741 -1.1664 24 1 -0.3634 0.5134 0.8902 25 1 -0.3634 0.5141 -0.8897 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6420 -0.2357 2.1399 28 1 3.1298 -0.6871 1.2710 29 1 1.8640 -2.4145 3.3343 30 1 3.2338 -2.9673 2.3412 31 1 1.8372 -4.7903 1.5887 32 1 1.8715 -4.4676 4.5189 33 1 3.1768 -5.1743 3.5366 34 1 2.7781 -9.0243 0.3152 35 1 2.3667 -6.8727 5.6673 36 1 1.7381 -8.3503 4.7598 37 1 -0.5201 -7.2260 4.4944 38 1 0.1089 -5.7490 5.4021 39 1 3.1669 -2.8396 -0.0863 40 1 1.7044 -3.8546 -0.1420 41 1 0.4754 -2.0552 -1.2958 42 1 1.9535 -2.4620 -2.2006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309749195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:54 Heat of formation + Delta-G solvation = -53.617906 kcal Electronic energy + Delta-G solvation = -19601.578532 eV Core-core repulsion = 16773.920519 eV Total energy + Delta-G solvation = -2827.658013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.81591 -39.02932 -36.80985 -34.20265 -33.96909 -32.92917 -29.61962 -28.14682 -27.15113 -24.85154 -24.42349 -23.24769 -22.32572 -20.79996 -20.12763 -18.20049 -17.32443 -16.98106 -16.85068 -16.71255 -15.75755 -15.54921 -15.37390 -15.17905 -14.75124 -14.42392 -14.33136 -13.96195 -13.57674 -13.28172 -13.03848 -12.99413 -12.65725 -12.58659 -12.46988 -12.10977 -12.08335 -11.90896 -11.81181 -11.48032 -11.27978 -10.92364 -10.90122 -10.60477 -10.35274 -10.20864 -9.05612 -8.24878 -6.28404 1.33312 1.36932 1.47340 2.37549 2.95571 3.07570 3.16584 3.52402 3.80149 3.88151 3.93931 4.08952 4.19424 4.23098 4.40565 4.43283 4.46813 4.53033 4.54566 4.58955 4.70391 4.74994 4.80036 4.85296 4.88362 4.89013 4.97527 5.03739 5.08970 5.12168 5.21365 5.24293 5.32026 5.36557 5.51579 5.53027 5.77793 6.32113 6.33447 6.48978 6.64380 6.82074 7.38720 8.90316 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.005637 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.055468 B = 4965.698424 C = 5431.472973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.117 0.883 4 C -0.136 4.136 5 C -0.079 4.079 6 H 0.077 0.923 7 C 0.064 3.936 8 N -0.684 5.684 9 C 0.103 3.897 10 C -0.021 4.021 11 C -0.463 4.463 12 H 0.034 0.966 13 C 0.023 3.977 14 N -0.947 5.947 15 Si 0.930 3.070 16 H -0.274 1.274 17 H -0.303 1.303 18 H -0.237 1.237 19 C -0.202 4.202 20 C -0.161 4.161 21 C -0.152 4.152 22 C 0.063 3.937 23 O -0.396 6.396 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.016 0.984 31 H 0.342 0.658 32 H 0.071 0.929 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 16.837 2.842 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.025 3.975 3 H 0.134 0.866 4 C -0.175 4.175 5 C -0.098 4.098 6 H 0.096 0.904 7 C -0.065 4.065 8 N -0.316 5.316 9 C -0.027 4.027 10 C -0.022 4.022 11 C -0.501 4.501 12 H 0.052 0.948 13 C -0.174 4.174 14 N -0.587 5.587 15 Si 0.757 3.243 16 H -0.200 1.200 17 H -0.230 1.230 18 H -0.160 1.160 19 C -0.240 4.240 20 C -0.198 4.198 21 C -0.190 4.190 22 C -0.014 4.014 23 O -0.315 6.315 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.034 0.966 31 H 0.162 0.838 32 H 0.090 0.910 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.132 17.002 2.885 17.246 hybrid contribution 1.424 -1.301 -0.119 1.933 sum 1.556 15.701 2.766 16.018 Atomic orbital electron populations 1.22429 0.95696 1.02613 1.03367 1.22345 0.94162 0.96615 0.84396 0.86575 1.22176 1.01467 0.94534 0.99275 1.21144 1.00853 0.94595 0.93202 0.90436 1.22039 0.95728 0.89852 0.98861 1.60368 1.62797 1.02575 1.05881 1.21500 0.94735 0.93072 0.93362 1.19409 1.00091 0.93613 0.89103 1.20299 1.00600 1.26392 1.02824 0.94811 1.25686 1.01359 0.95048 0.95306 1.70040 1.34949 1.33932 1.19815 0.86047 0.79331 0.80303 0.78646 1.19953 1.23023 1.16047 1.23006 1.00619 0.98258 1.02097 1.22818 0.91701 1.02332 1.02925 1.22197 1.00899 0.99767 0.96142 1.22536 0.99103 0.81738 0.98020 1.87932 1.74290 1.25035 1.44275 0.89965 0.91735 0.92738 0.89055 0.91593 0.90361 0.96591 0.83843 0.91044 0.97145 0.92864 0.88391 0.91180 0.90945 0.88041 0.92371 0.92180 0.92302 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 8.65 71.98 0.62 -2.70 16 2 C 0.08 1.64 3.91 30.62 0.12 1.76 16 3 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.14 -2.82 4.92 30.68 0.15 -2.66 16 5 C -0.08 -2.09 2.17 -10.67 -0.02 -2.11 16 6 H 0.08 2.14 6.62 -2.39 -0.02 2.13 16 7 C 0.06 1.92 5.14 86.31 0.44 2.37 16 8 N -0.68 -26.21 6.23 -513.87 -3.20 -29.41 16 9 C 0.10 4.04 5.63 86.31 0.49 4.53 16 10 C -0.02 -0.94 1.22 -52.92 -0.06 -1.01 16 11 C -0.46 -25.49 8.08 25.60 0.21 -25.28 16 12 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 13 C 0.02 1.31 5.47 84.65 0.46 1.77 16 14 N -0.95 -58.04 13.96 21.45 0.30 -57.74 16 15 Si 0.93 44.14 25.05 68.60 1.72 45.85 16 16 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 18 H -0.24 -10.31 5.41 99.48 0.54 -9.77 16 19 C -0.20 -8.13 7.60 30.59 0.23 -7.90 16 20 C -0.16 -6.29 9.88 30.59 0.30 -5.99 16 21 C -0.15 -4.42 5.11 30.68 0.16 -4.26 16 22 C 0.06 1.61 6.51 72.01 0.47 2.08 16 23 O -0.40 -10.14 10.60 -148.98 -1.58 -11.71 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.14 4.98 -2.38 -0.01 1.13 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 30 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.34 14.93 6.15 -89.69 -0.55 14.38 16 32 H 0.07 2.44 7.91 -2.39 -0.02 2.43 16 33 H 0.01 0.43 6.38 -2.39 -0.02 0.42 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.07 3.04 7.20 -2.39 -0.02 3.02 16 37 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.10 3.35 8.08 -2.39 -0.02 3.33 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 2.04 6.89 -2.39 -0.02 2.03 16 41 H 0.06 1.44 6.34 -2.38 -0.02 1.43 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -62.31 316.23 1.07 -61.24 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.26 Total: 31.18 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 3.57 Total: -39.41 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -2.90 Total: -87.15 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -1.58 Total: -11.71 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.72 Total: 45.85 kcal Total: -62.31 1.07 -61.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309749195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.624 kcal (2) G-P(sol) polarization free energy of solvation -62.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds