Wall clock time and date at job start Mon Mar 30 2020 07:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.48256 * 2 1 4 4 C 1.53096 * 109.48137 * 239.97541 * 2 1 3 5 5 C 1.53177 * 109.16309 * 182.39647 * 4 2 1 6 6 H 1.09006 * 109.54302 * 297.11553 * 5 4 2 7 7 C 1.52996 * 109.54168 * 176.94142 * 5 4 2 8 8 N 1.46906 * 109.46892 * 174.72084 * 7 5 4 9 9 C 1.46909 * 110.99708 * 183.51336 * 8 7 5 10 10 C 1.52998 * 109.46841 * 185.16578 * 9 8 7 11 11 C 1.50706 * 115.55047 * 56.83421 * 10 9 8 12 12 H 1.07993 * 120.00011 * 264.69475 * 11 10 9 13 13 C 1.37882 * 119.99932 * 84.68694 * 11 10 9 14 14 N 1.31515 * 119.99880 * 1.83107 * 13 11 10 15 15 Si 1.86794 * 119.99975 * 181.83103 * 13 11 10 16 16 H 1.48503 * 109.47018 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47214 * 119.99890 * 15 13 11 18 18 H 1.48502 * 109.47379 * 240.00129 * 15 13 11 19 19 C 1.52999 * 117.49955 * 271.16201 * 10 9 8 20 20 C 1.53003 * 117.49840 * 202.50033 * 10 9 8 21 21 C 1.53175 * 109.03643 * 56.98290 * 5 4 2 22 22 C 1.53092 * 109.16333 * 303.02141 * 21 5 4 23 23 O 1.42900 * 109.48826 * 120.03117 * 2 1 3 24 24 H 1.09001 * 109.47137 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47362 * 300.02394 * 1 2 3 26 26 H 1.09005 * 109.47286 * 60.02362 * 1 2 3 27 27 H 1.09003 * 109.51925 * 62.49619 * 4 2 1 28 28 H 1.08995 * 109.52574 * 302.30528 * 4 2 1 29 29 H 1.08997 * 109.47287 * 294.72049 * 7 5 4 30 30 H 1.08997 * 109.47795 * 54.72166 * 7 5 4 31 31 H 1.00897 * 111.00295 * 307.46633 * 8 7 5 32 32 H 1.08999 * 109.47243 * 305.16821 * 9 8 7 33 33 H 1.09000 * 109.46904 * 65.16648 * 9 8 7 34 34 H 0.96993 * 119.99636 * 185.00865 * 14 13 11 35 35 H 1.08996 * 117.50203 * 0.02562 * 19 10 9 36 36 H 1.09005 * 117.49547 * 145.02479 * 19 10 9 37 37 H 1.08998 * 117.49571 * 214.98096 * 20 10 9 38 38 H 1.08996 * 117.49334 * 359.97438 * 20 10 9 39 39 H 1.09000 * 109.51973 * 62.92385 * 21 5 4 40 40 H 1.08994 * 109.52429 * 183.11280 * 21 5 4 41 41 H 1.09001 * 109.47814 * 297.62236 * 22 21 5 42 42 H 1.09003 * 109.48884 * 177.60082 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7705 -1.2124 6 1 3.9688 0.2440 -1.2410 7 6 4.0878 -1.5570 -2.4187 8 7 5.5552 -1.4956 -2.4512 9 6 6.0840 -2.1706 -3.6440 10 6 7.6124 -2.1990 -3.5784 11 6 8.1984 -2.8511 -2.3526 12 1 8.4844 -2.2472 -1.5043 13 6 8.3692 -4.2188 -2.3143 14 7 8.0543 -4.9503 -3.3609 15 14 9.0478 -5.0325 -0.7760 16 1 9.3204 -3.9967 0.2527 17 1 8.0541 -6.0026 -0.2497 18 1 10.3077 -5.7452 -1.1076 19 6 8.3672 -1.0094 -4.1750 20 6 8.3732 -2.3597 -4.8961 21 6 4.0178 -1.4597 0.0806 22 6 3.4309 -0.7091 1.2788 23 8 2.0067 -0.6742 1.1663 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5142 0.8897 26 1 -0.3634 0.5135 -0.8902 27 1 1.7147 -0.1842 -2.1399 28 1 1.6445 -1.7374 -1.2711 29 1 3.7693 -2.5963 -2.3384 30 1 3.6857 -1.1236 -3.3344 31 1 5.8784 -0.5410 -2.4028 32 1 5.7030 -3.1911 -3.6829 33 1 5.7686 -1.6308 -4.5368 34 1 8.1054 -5.9176 -3.3095 35 1 7.7751 -0.2064 -4.6138 36 1 9.2880 -0.6987 -3.6811 37 1 9.2977 -2.9367 -4.8763 38 1 7.7848 -2.4456 -5.8096 39 1 3.6617 -2.4898 0.0860 40 1 5.1060 -1.4492 0.1417 41 1 3.8193 0.3092 1.2956 42 1 3.7104 -1.2199 2.2003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309749197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:02 Heat of formation + Delta-G solvation = -57.578904 kcal Electronic energy + Delta-G solvation = -19292.388317 eV Core-core repulsion = 16464.558543 eV Total energy + Delta-G solvation = -2827.829775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52577 -38.79159 -36.74790 -34.04305 -33.79281 -33.44514 -29.24296 -27.91029 -27.10451 -24.83846 -24.03309 -22.86548 -22.06068 -21.20354 -20.73089 -18.01035 -17.24003 -16.90074 -16.57614 -16.16997 -16.05908 -15.70018 -15.40688 -14.90145 -14.81664 -14.39864 -13.81919 -13.42619 -13.27026 -13.11256 -12.97249 -12.94229 -12.81714 -12.66147 -12.60163 -12.29991 -11.99608 -11.98088 -11.76383 -11.45526 -11.27889 -11.07592 -10.84473 -10.37355 -10.27354 -9.87875 -8.99997 -8.00731 -6.07103 1.41307 1.44575 1.54421 2.49212 2.90677 3.27098 3.29553 3.61788 3.76818 3.93716 4.00362 4.07880 4.30846 4.36113 4.39405 4.48815 4.52501 4.64701 4.67203 4.69118 4.76082 4.80864 4.82820 4.85991 4.94485 4.99796 5.01119 5.09868 5.12970 5.19094 5.30827 5.34483 5.39698 5.49560 5.67666 5.72681 5.89265 6.36741 6.37527 6.54390 6.79155 6.96498 7.57981 9.08200 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.005305 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.892598 B = 5276.963126 C = 6026.437207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.065 0.935 4 C -0.139 4.139 5 C -0.077 4.077 6 H 0.078 0.922 7 C 0.071 3.929 8 N -0.674 5.674 9 C 0.123 3.877 10 C 0.022 3.978 11 C -0.467 4.467 12 H 0.049 0.951 13 C 0.021 3.979 14 N -0.917 5.917 15 Si 0.942 3.058 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.287 1.287 19 C -0.188 4.188 20 C -0.164 4.164 21 C -0.139 4.139 22 C 0.064 3.936 23 O -0.402 6.402 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.338 0.662 32 H 0.035 0.965 33 H 0.009 0.991 34 H 0.254 0.746 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.822 11.196 4.476 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.083 0.917 4 C -0.177 4.177 5 C -0.096 4.096 6 H 0.096 0.904 7 C -0.058 4.058 8 N -0.304 5.304 9 C -0.006 4.006 10 C 0.021 3.979 11 C -0.505 4.505 12 H 0.067 0.933 13 C -0.177 4.177 14 N -0.557 5.557 15 Si 0.769 3.231 16 H -0.192 1.192 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.225 4.225 20 C -0.202 4.202 21 C -0.177 4.177 22 C -0.012 4.012 23 O -0.322 6.322 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.156 0.844 32 H 0.054 0.946 33 H 0.027 0.973 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.808 10.381 4.941 17.211 hybrid contribution 0.621 -0.442 -0.389 0.856 sum -12.187 9.939 4.551 16.372 Atomic orbital electron populations 1.21779 0.91957 1.02810 1.03334 1.22240 0.95898 0.95033 0.84379 0.91670 1.22227 0.94502 1.01750 0.99206 1.21131 0.95336 0.99192 0.93967 0.90399 1.21934 0.87948 0.99371 0.96582 1.60116 1.07555 1.20965 1.41781 1.21150 0.94638 0.96229 0.88591 1.18991 0.89928 0.96296 0.92683 1.20523 1.38789 0.91524 0.99691 0.93314 1.25545 0.96102 0.98186 0.97913 1.70109 1.51025 1.04851 1.29686 0.85760 0.77691 0.78559 0.81104 1.19214 1.21326 1.21294 1.23002 1.02815 0.91123 1.05560 1.22387 1.02266 0.99097 0.96476 1.22056 1.01576 0.99163 0.94876 1.22628 0.80214 1.00023 0.98379 1.87879 1.21829 1.78537 1.43921 0.92534 0.91653 0.89249 0.89421 0.92075 0.93442 0.95261 0.84444 0.94637 0.97329 0.93708 0.89252 0.90653 0.92520 0.91272 0.93324 0.90942 0.92186 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.56 71.98 0.69 -1.58 16 2 C 0.08 1.65 3.26 30.62 0.10 1.75 16 3 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.14 -2.96 4.70 30.69 0.14 -2.82 16 5 C -0.08 -1.97 2.38 -10.68 -0.03 -2.00 16 6 H 0.08 1.82 8.13 -2.38 -0.02 1.81 16 7 C 0.07 2.21 5.09 86.30 0.44 2.65 16 8 N -0.67 -25.29 5.79 -513.87 -2.98 -28.27 16 9 C 0.12 5.41 5.55 86.30 0.48 5.89 16 10 C 0.02 1.05 1.65 -52.93 -0.09 0.96 16 11 C -0.47 -25.41 8.57 25.60 0.22 -25.19 16 12 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 13 C 0.02 1.15 5.42 84.66 0.46 1.61 16 14 N -0.92 -53.48 12.73 21.45 0.27 -53.21 16 15 Si 0.94 44.79 29.54 68.60 2.03 46.81 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 18 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 19 C -0.19 -7.83 9.94 30.62 0.30 -7.52 16 20 C -0.16 -7.76 9.26 30.62 0.28 -7.48 16 21 C -0.14 -3.92 5.28 30.68 0.16 -3.76 16 22 C 0.06 1.53 6.84 72.01 0.49 2.02 16 23 O -0.40 -10.17 10.41 -148.98 -1.55 -11.72 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.34 11.58 8.73 -89.70 -0.78 10.79 16 32 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 33 H 0.01 0.35 8.10 -2.39 -0.02 0.33 16 34 H 0.25 14.30 8.32 -92.71 -0.77 13.53 16 35 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 37 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 2.32 7.88 -2.39 -0.02 2.30 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 42 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -60.88 336.53 1.61 -59.27 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.18 Total: 22.58 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 3.66 Total: -35.47 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.70 Total: -81.48 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.55 Total: -11.72 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -60.88 1.61 -59.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309749197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.693 kcal (2) G-P(sol) polarization free energy of solvation -60.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds