Wall clock time and date at job start Mon Mar 30 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 N 1.46501 * 109.47469 * 179.56249 * 3 2 1 5 5 C 1.37092 * 120.00105 * 264.42830 * 4 3 2 6 6 H 1.07999 * 120.00275 * 190.47515 * 5 4 3 7 7 C 1.38957 * 119.99966 * 10.47030 * 5 4 3 8 8 N 1.31407 * 119.99986 * 20.17059 * 7 5 4 9 9 Si 1.86802 * 119.99950 * 200.16499 * 7 5 4 10 10 H 1.48493 * 109.47017 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47060 * 120.00246 * 9 7 5 12 12 H 1.48498 * 109.46813 * 239.99919 * 9 7 5 13 13 C 1.34777 * 119.99969 * 84.42436 * 4 3 2 14 14 O 1.21291 * 119.99652 * 6.59343 * 13 4 3 15 15 C 1.50696 * 120.00145 * 186.59904 * 13 4 3 16 16 C 1.53005 * 109.47321 * 53.19119 * 15 13 4 17 17 C 1.52997 * 109.46902 * 293.19617 * 15 13 4 18 18 C 1.52997 * 109.47521 * 173.19547 * 15 13 4 19 19 C 1.53780 * 113.61842 * 182.44672 * 18 15 13 20 20 C 1.53774 * 87.08067 * 139.97798 * 19 18 15 21 21 C 1.53781 * 87.08702 * 334.56572 * 20 19 18 22 22 H 1.09003 * 109.46867 * 299.99423 * 1 2 3 23 23 H 1.09000 * 109.47310 * 59.99365 * 1 2 3 24 24 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46867 * 240.00577 * 2 1 3 26 26 H 1.08993 * 109.47197 * 119.99972 * 2 1 3 27 27 H 1.09006 * 109.46989 * 59.56259 * 3 2 1 28 28 H 1.09005 * 109.47349 * 299.56281 * 3 2 1 29 29 H 0.96998 * 120.00513 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47296 * 170.21674 * 16 15 13 31 31 H 1.09002 * 109.47349 * 290.22357 * 16 15 13 32 32 H 1.09006 * 109.46963 * 50.21581 * 16 15 13 33 33 H 1.09007 * 109.46916 * 283.29042 * 17 15 13 34 34 H 1.08996 * 109.47688 * 43.28938 * 17 15 13 35 35 H 1.08998 * 109.47254 * 163.29524 * 17 15 13 36 36 H 1.08996 * 112.90754 * 51.19258 * 18 15 13 37 37 H 1.09003 * 113.61267 * 25.42767 * 19 18 15 38 38 H 1.08997 * 113.68768 * 254.54214 * 19 18 15 39 39 H 1.08996 * 113.61499 * 89.12174 * 20 19 18 40 40 H 1.09004 * 113.61694 * 220.01417 * 20 19 18 41 41 H 1.08997 * 113.61372 * 139.97959 * 21 20 19 42 42 H 1.08991 * 113.61410 * 270.88987 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0105 5 6 4.1819 1.5610 1.1968 6 1 5.2485 1.7311 1.1953 7 6 3.4958 1.4622 2.4011 8 7 2.3196 0.8777 2.4412 9 14 4.2457 2.1602 3.9632 10 1 5.5667 2.7626 3.6518 11 1 3.3464 3.2018 4.5214 12 1 4.4196 1.0715 4.9580 13 6 4.1872 1.3263 -1.1460 14 8 3.5943 1.3419 -2.2040 15 6 5.6866 1.1768 -1.1246 16 6 6.0702 0.0146 -0.2063 17 6 6.3205 2.4684 -0.6042 18 6 6.1914 0.8956 -2.5412 19 6 7.7101 0.6667 -2.6200 20 6 7.4100 -0.4484 -3.6355 21 6 6.0272 -0.5710 -2.9739 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6702 1.9586 0.8861 28 1 1.6831 1.9541 -0.8939 29 1 1.8405 0.8090 3.2817 30 1 7.1313 -0.2059 -0.3233 31 1 5.8678 0.2876 0.8293 32 1 5.4848 -0.8660 -0.4709 33 1 6.3048 3.2232 -1.3905 34 1 5.7571 2.8287 0.2565 35 1 7.3512 2.2737 -0.3081 36 1 5.8192 1.6114 -3.2741 37 1 8.1458 0.3038 -1.6890 38 1 8.2583 1.5078 -3.0443 39 1 7.3710 -0.1001 -4.6675 40 1 8.0341 -1.3331 -3.5097 41 1 5.2157 -0.7283 -3.6843 42 1 6.0028 -1.2721 -2.1398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322787904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:53 Heat of formation + Delta-G solvation = -7.073392 kcal Electronic energy + Delta-G solvation = -20651.891369 eV Core-core repulsion = 17826.251678 eV Total energy + Delta-G solvation = -2825.639691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -39.89488 -37.74415 -35.03385 -33.60651 -31.98993 -31.04554 -26.80776 -25.92785 -25.19332 -24.69985 -24.52283 -21.56673 -20.28147 -19.01913 -17.97160 -17.20270 -15.64647 -15.06826 -14.59472 -14.21254 -14.01847 -13.80555 -13.52954 -13.08363 -12.78933 -12.50015 -12.23651 -11.95393 -11.78309 -11.39631 -11.32820 -11.15941 -11.10345 -10.89664 -10.76284 -10.64320 -10.46924 -10.32095 -10.22148 -9.96188 -9.76540 -9.68887 -9.46154 -9.19220 -8.76297 -8.07864 -7.65520 -6.31091 -3.81137 3.09051 3.21556 3.23126 3.99787 4.08792 4.79202 5.04052 5.11192 5.15342 5.23354 5.44158 5.70883 5.81164 5.97543 6.01239 6.10421 6.14255 6.20261 6.21268 6.23847 6.33809 6.36334 6.47686 6.52109 6.56028 6.63773 6.69301 6.75117 6.84505 6.92822 7.02383 7.03886 7.07605 7.13196 7.21651 7.42743 7.55919 7.80602 7.87571 8.50705 9.12659 9.64321 10.04596 10.65380 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.008825 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.002326 B = 3171.874972 C = 4110.042146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.140 3.860 4 N -0.442 5.442 5 C -0.336 4.336 6 H 0.119 0.881 7 C 0.032 3.968 8 N -0.857 5.857 9 Si 0.910 3.090 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.467 3.533 14 O -0.609 6.609 15 C -0.052 4.052 16 C -0.148 4.148 17 C -0.150 4.150 18 C -0.076 4.076 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.135 4.135 22 H 0.051 0.949 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.028 0.972 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.028 -0.908 -2.663 6.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C 0.017 3.983 4 N -0.159 5.159 5 C -0.463 4.463 6 H 0.136 0.864 7 C -0.172 4.172 8 N -0.496 5.496 9 Si 0.737 3.263 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.255 3.745 14 O -0.496 6.496 15 C -0.055 4.055 16 C -0.204 4.204 17 C -0.208 4.208 18 C -0.095 4.095 19 C -0.176 4.176 20 C -0.181 4.181 21 C -0.172 4.172 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.561 -0.932 -2.998 6.386 hybrid contribution 0.217 0.247 0.901 0.959 sum 5.778 -0.685 -2.098 6.185 Atomic orbital electron populations 1.21579 0.97763 0.99625 1.00316 1.21770 0.93608 0.98612 1.01544 1.21238 0.80379 0.96666 1.00025 1.43753 1.05323 1.61554 1.05293 1.20175 0.94973 1.48498 0.82689 0.86415 1.25216 0.96384 0.96549 0.99085 1.70136 1.14405 1.38428 1.26610 0.86132 0.79288 0.78983 0.81910 1.19313 1.20692 1.20931 1.19972 0.88749 0.81978 0.83788 1.90492 1.70794 1.57452 1.30878 1.20290 0.93678 0.96575 0.95003 1.22185 0.99111 0.97104 1.02040 1.22053 1.00153 0.96325 1.02220 1.22269 0.93933 0.97108 0.96147 1.23033 0.97065 0.98274 0.99272 1.22800 0.98138 0.98732 0.98433 1.22973 0.96218 0.97700 1.00327 0.92967 0.94579 0.94437 0.95314 0.88630 0.88680 0.94942 0.92418 0.93686 0.89132 0.93140 0.93574 0.89584 0.93123 0.89383 0.89993 0.92323 0.90899 0.92240 0.91926 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.91 37.16 0.37 -2.26 16 2 C -0.12 -2.70 5.68 -26.73 -0.15 -2.85 16 3 C 0.14 3.43 4.59 -4.04 -0.02 3.41 16 4 N -0.44 -10.91 2.63 -114.81 -0.30 -11.21 16 5 C -0.34 -8.01 6.65 -14.93 -0.10 -8.11 16 6 H 0.12 2.64 3.25 -52.49 -0.17 2.47 16 7 C 0.03 0.75 5.00 -17.47 -0.09 0.66 16 8 N -0.86 -20.91 8.31 55.50 0.46 -20.45 16 9 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 10 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.47 11.25 6.35 -10.99 -0.07 11.18 16 14 O -0.61 -16.30 15.51 5.55 0.09 -16.22 16 15 C -0.05 -1.03 0.41 -155.66 -0.06 -1.09 16 16 C -0.15 -2.75 6.81 37.16 0.25 -2.49 16 17 C -0.15 -2.72 7.71 37.16 0.29 -2.43 16 18 C -0.08 -1.35 2.40 -89.80 -0.22 -1.57 16 19 C -0.14 -2.00 6.94 -25.92 -0.18 -2.18 16 20 C -0.14 -1.98 8.08 -25.92 -0.21 -2.19 16 21 C -0.13 -2.28 7.33 -25.91 -0.19 -2.47 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.10 2.38 6.26 -51.93 -0.33 2.06 16 27 H 0.10 2.41 5.87 -51.93 -0.30 2.10 16 28 H 0.03 0.82 7.51 -51.93 -0.39 0.43 16 29 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 30 H 0.04 0.71 6.02 -51.93 -0.31 0.40 16 31 H 0.09 1.81 4.94 -51.93 -0.26 1.55 16 32 H 0.05 0.99 6.66 -51.93 -0.35 0.64 16 33 H 0.05 0.80 8.03 -51.93 -0.42 0.39 16 34 H 0.09 1.70 5.11 -51.93 -0.27 1.43 16 35 H 0.05 0.79 7.96 -51.93 -0.41 0.37 16 36 H 0.09 1.71 7.84 -51.93 -0.41 1.31 16 37 H 0.08 1.14 6.14 -51.93 -0.32 0.82 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.08 1.41 5.74 -51.93 -0.30 1.11 16 LS Contribution 310.02 15.07 4.67 4.67 Total: -1.00 -26.50 310.02 -7.23 -33.74 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.74 Total: 8.19 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.38 Total: -12.39 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.16 Total: -31.66 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.09 Total: -16.22 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.50 -7.23 -33.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322787904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.663 kcal (2) G-P(sol) polarization free energy of solvation -26.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds