Wall clock time and date at job start Mon Mar 30 2020 06:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 N 1.46501 * 109.47469 * 179.56249 * 3 2 1 5 5 C 1.37092 * 120.00105 * 264.42830 * 4 3 2 6 6 H 1.07999 * 120.00275 * 190.47515 * 5 4 3 7 7 C 1.38957 * 119.99966 * 10.47030 * 5 4 3 8 8 N 1.31407 * 119.99986 * 20.17059 * 7 5 4 9 9 Si 1.86802 * 119.99950 * 200.16499 * 7 5 4 10 10 H 1.48493 * 109.47017 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47060 * 120.00246 * 9 7 5 12 12 H 1.48498 * 109.46813 * 239.99919 * 9 7 5 13 13 C 1.34777 * 119.99969 * 84.42436 * 4 3 2 14 14 O 1.21291 * 119.99652 * 6.59343 * 13 4 3 15 15 C 1.50696 * 120.00145 * 186.59904 * 13 4 3 16 16 C 1.53005 * 109.47321 * 53.19119 * 15 13 4 17 17 C 1.52997 * 109.46902 * 293.19617 * 15 13 4 18 18 C 1.52997 * 109.47521 * 173.19547 * 15 13 4 19 19 C 1.53780 * 113.61842 * 182.44672 * 18 15 13 20 20 C 1.53774 * 87.08067 * 139.97798 * 19 18 15 21 21 C 1.53781 * 87.08702 * 334.56572 * 20 19 18 22 22 H 1.09003 * 109.46867 * 299.99423 * 1 2 3 23 23 H 1.09000 * 109.47310 * 59.99365 * 1 2 3 24 24 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46867 * 240.00577 * 2 1 3 26 26 H 1.08993 * 109.47197 * 119.99972 * 2 1 3 27 27 H 1.09006 * 109.46989 * 59.56259 * 3 2 1 28 28 H 1.09005 * 109.47349 * 299.56281 * 3 2 1 29 29 H 0.96998 * 120.00513 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47296 * 170.21674 * 16 15 13 31 31 H 1.09002 * 109.47349 * 290.22357 * 16 15 13 32 32 H 1.09006 * 109.46963 * 50.21581 * 16 15 13 33 33 H 1.09007 * 109.46916 * 283.29042 * 17 15 13 34 34 H 1.08996 * 109.47688 * 43.28938 * 17 15 13 35 35 H 1.08998 * 109.47254 * 163.29524 * 17 15 13 36 36 H 1.08996 * 112.90754 * 51.19258 * 18 15 13 37 37 H 1.09003 * 113.61267 * 25.42767 * 19 18 15 38 38 H 1.08997 * 113.68768 * 254.54214 * 19 18 15 39 39 H 1.08996 * 113.61499 * 89.12174 * 20 19 18 40 40 H 1.09004 * 113.61694 * 220.01417 * 20 19 18 41 41 H 1.08997 * 113.61372 * 139.97959 * 21 20 19 42 42 H 1.08991 * 113.61410 * 270.88987 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0105 5 6 4.1819 1.5610 1.1968 6 1 5.2485 1.7311 1.1953 7 6 3.4958 1.4622 2.4011 8 7 2.3196 0.8777 2.4412 9 14 4.2457 2.1602 3.9632 10 1 5.5667 2.7626 3.6518 11 1 3.3464 3.2018 4.5214 12 1 4.4196 1.0715 4.9580 13 6 4.1872 1.3263 -1.1460 14 8 3.5943 1.3419 -2.2040 15 6 5.6866 1.1768 -1.1246 16 6 6.0702 0.0146 -0.2063 17 6 6.3205 2.4684 -0.6042 18 6 6.1914 0.8956 -2.5412 19 6 7.7101 0.6667 -2.6200 20 6 7.4100 -0.4484 -3.6355 21 6 6.0272 -0.5710 -2.9739 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6702 1.9586 0.8861 28 1 1.6831 1.9541 -0.8939 29 1 1.8405 0.8090 3.2817 30 1 7.1313 -0.2059 -0.3233 31 1 5.8678 0.2876 0.8293 32 1 5.4848 -0.8660 -0.4709 33 1 6.3048 3.2232 -1.3905 34 1 5.7571 2.8287 0.2565 35 1 7.3512 2.2737 -0.3081 36 1 5.8192 1.6114 -3.2741 37 1 8.1458 0.3038 -1.6890 38 1 8.2583 1.5078 -3.0443 39 1 7.3710 -0.1001 -4.6675 40 1 8.0341 -1.3331 -3.5097 41 1 5.2157 -0.7283 -3.6843 42 1 6.0028 -1.2721 -2.1398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000322787904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:51 Heat of formation + Delta-G solvation = -19.774620 kcal Electronic energy + Delta-G solvation = -20652.442136 eV Core-core repulsion = 17826.251678 eV Total energy + Delta-G solvation = -2826.190458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -41.49580 -39.34061 -36.95190 -35.21223 -33.78437 -32.85717 -28.26215 -27.69263 -26.71592 -26.18861 -26.01303 -23.20164 -22.03625 -20.73803 -19.49518 -18.89959 -17.39545 -16.56413 -16.20033 -15.83618 -15.71440 -15.55728 -15.29129 -14.76824 -14.29634 -14.01031 -13.78043 -13.54800 -13.30198 -13.06216 -12.94065 -12.65899 -12.57133 -12.49196 -12.39976 -12.27329 -12.06397 -11.96484 -11.84580 -11.50015 -11.33341 -11.10569 -11.04925 -10.69605 -10.66097 -9.92952 -9.57848 -8.14414 -5.70072 1.44664 1.53642 1.63376 2.15182 2.35824 3.08235 3.22620 3.82788 3.86925 3.93297 4.08311 4.22246 4.37324 4.38192 4.48620 4.57259 4.65940 4.70986 4.81317 4.86891 4.92072 4.99301 5.02078 5.08658 5.10765 5.13141 5.14587 5.20011 5.24610 5.29787 5.33837 5.41606 5.51712 5.57320 5.57782 5.72866 5.80248 5.89211 5.98078 6.61863 7.25544 7.75641 8.16433 8.82789 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.008825 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.002326 B = 3171.874972 C = 4110.042146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.142 3.858 4 N -0.452 5.452 5 C -0.350 4.350 6 H 0.134 0.866 7 C -0.008 4.008 8 N -0.878 5.878 9 Si 0.975 3.025 10 H -0.255 1.255 11 H -0.287 1.287 12 H -0.284 1.284 13 C 0.449 3.551 14 O -0.648 6.648 15 C -0.050 4.050 16 C -0.138 4.138 17 C -0.145 4.145 18 C -0.087 4.087 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.145 4.145 22 H 0.054 0.946 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.007 0.993 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.015 0.985 29 H 0.266 0.734 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 -0.962 -1.994 8.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.019 3.981 4 N -0.168 5.168 5 C -0.476 4.476 6 H 0.151 0.849 7 C -0.210 4.210 8 N -0.517 5.517 9 Si 0.800 3.200 10 H -0.179 1.179 11 H -0.213 1.213 12 H -0.210 1.210 13 C 0.239 3.761 14 O -0.537 6.537 15 C -0.052 4.052 16 C -0.195 4.195 17 C -0.202 4.202 18 C -0.106 4.106 19 C -0.160 4.160 20 C -0.165 4.165 21 C -0.183 4.183 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.901 -0.987 -2.323 8.294 hybrid contribution -0.598 0.253 0.672 0.935 sum 7.302 -0.733 -1.651 7.523 Atomic orbital electron populations 1.21493 0.94896 1.01189 1.00783 1.21601 0.96123 0.97116 0.99431 1.21171 0.81180 0.97242 0.98538 1.44018 1.05363 1.61312 1.06117 1.20575 0.95827 1.48764 0.82439 0.84887 1.25994 0.96911 0.96453 1.01653 1.70231 1.15422 1.38794 1.27288 0.85132 0.78923 0.77862 0.78094 1.17897 1.21277 1.21019 1.20905 0.90967 0.81229 0.82982 1.90450 1.72126 1.59066 1.32079 1.20330 0.90291 0.97906 0.96721 1.22089 1.00958 0.95753 1.00660 1.21999 1.01504 0.95306 1.01396 1.22294 0.97084 0.96943 0.94282 1.22983 0.93931 0.98987 1.00090 1.22744 0.95635 0.99502 0.98588 1.23023 0.97827 0.97172 1.00236 0.92723 0.93807 0.92330 0.97436 0.90350 0.89527 0.96640 0.92384 0.90119 0.90488 0.95022 0.93434 0.91399 0.89796 0.91751 0.88681 0.90518 0.90062 0.89938 0.94345 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 9.91 71.98 0.71 -4.19 16 2 C -0.10 -4.97 5.68 30.60 0.17 -4.79 16 3 C 0.14 7.23 4.59 86.38 0.40 7.63 16 4 N -0.45 -22.90 2.63 -635.52 -1.67 -24.57 16 5 C -0.35 -16.68 6.65 84.04 0.56 -16.12 16 6 H 0.13 5.84 3.25 -2.91 -0.01 5.83 16 7 C -0.01 -0.39 5.00 84.93 0.42 0.03 16 8 N -0.88 -43.24 8.31 21.66 0.18 -43.06 16 9 Si 0.97 37.73 29.60 68.60 2.03 39.76 16 10 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 11 H -0.29 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 13 C 0.45 22.25 6.35 87.66 0.56 22.81 16 14 O -0.65 -36.23 15.51 -3.06 -0.05 -36.28 16 15 C -0.05 -1.92 0.41 -52.93 -0.02 -1.94 16 16 C -0.14 -4.94 6.81 71.98 0.49 -4.45 16 17 C -0.14 -4.97 7.71 71.98 0.56 -4.42 16 18 C -0.09 -3.04 2.40 -10.27 -0.02 -3.06 16 19 C -0.12 -3.09 6.94 31.12 0.22 -2.88 16 20 C -0.13 -3.14 8.08 31.12 0.25 -2.89 16 21 C -0.15 -4.84 7.33 31.12 0.23 -4.61 16 22 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.08 4.02 6.26 -2.39 -0.01 4.00 16 27 H 0.09 4.53 5.87 -2.38 -0.01 4.52 16 28 H 0.02 0.81 7.51 -2.38 -0.02 0.79 16 29 H 0.27 12.50 8.31 -92.71 -0.77 11.73 16 30 H 0.08 2.28 6.02 -2.39 -0.01 2.27 16 31 H 0.08 2.98 4.94 -2.39 -0.01 2.96 16 32 H 0.03 1.23 6.66 -2.38 -0.02 1.21 16 33 H 0.05 1.59 8.03 -2.38 -0.02 1.57 16 34 H 0.07 2.59 5.11 -2.39 -0.01 2.58 16 35 H 0.08 2.30 7.96 -2.39 -0.02 2.28 16 36 H 0.06 2.53 7.84 -2.39 -0.02 2.52 16 37 H 0.09 2.17 6.14 -2.39 -0.01 2.15 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 1.69 8.14 -2.38 -0.02 1.68 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 2.68 5.74 -2.39 -0.01 2.67 16 Total: -1.00 -58.79 310.02 6.01 -52.78 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 1.00 Total: 30.23 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.52 Total: -18.87 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -1.49 Total: -67.63 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.05 Total: -36.28 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -58.79 6.01 -52.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322787904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.009 kcal (2) G-P(sol) polarization free energy of solvation -58.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds