Wall clock time and date at job start Mon Mar 30 2020 07:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52828 * 1 3 3 H 1.11134 * 106.60569 * 2 1 4 4 C 1.52215 * 110.62659 * 115.97000 * 2 1 3 5 5 C 1.52770 * 110.73451 * 74.46834 * 4 2 1 6 6 H 1.08683 * 110.35517 * 299.50794 * 5 4 2 7 7 C 1.51057 * 109.10214 * 179.97438 * 5 4 2 8 8 O 1.21294 * 120.00435 * 269.74287 * 7 5 4 9 9 N 1.34775 * 119.99925 * 89.73846 * 7 5 4 10 10 C 1.46507 * 120.00104 * 4.72156 * 9 7 5 11 11 C 1.37095 * 120.00567 * 184.99773 * 9 7 5 12 12 H 1.08005 * 119.99670 * 334.28366 * 11 9 7 13 13 C 1.38945 * 120.00711 * 154.27777 * 11 9 7 14 14 N 1.31412 * 120.00480 * 156.31683 * 13 11 9 15 15 Si 1.86803 * 119.99936 * 336.32000 * 13 11 9 16 16 H 1.48499 * 109.46964 * 94.83741 * 15 13 11 17 17 H 1.48501 * 109.47379 * 214.83696 * 15 13 11 18 18 H 1.48502 * 109.46890 * 334.84254 * 15 13 11 19 19 C 1.52707 * 108.88004 * 60.96255 * 5 4 2 20 20 C 1.52468 * 110.82053 * 298.35981 * 19 5 4 21 21 C 1.54418 * 107.71774 * 171.51969 * 20 19 5 22 22 C 1.53108 * 110.03671 * 288.31866 * 20 19 5 23 23 C 1.51523 * 111.71377 * 242.96982 * 2 1 3 24 24 H 1.09006 * 109.47606 * 177.02890 * 1 2 3 25 25 H 1.09000 * 109.47719 * 297.02876 * 1 2 3 26 26 H 1.09001 * 109.47050 * 57.03341 * 1 2 3 27 27 H 1.09340 * 109.55804 * 313.98629 * 4 2 1 28 28 H 1.09319 * 109.58508 * 195.02078 * 4 2 1 29 29 H 1.08998 * 109.46421 * 35.39415 * 10 9 7 30 30 H 1.08994 * 109.47213 * 155.39644 * 10 9 7 31 31 H 1.09001 * 109.46829 * 275.40065 * 10 9 7 32 32 H 0.97005 * 120.00187 * 180.02562 * 14 13 11 33 33 H 1.09302 * 109.28708 * 59.03409 * 19 5 4 34 34 H 1.09303 * 109.25941 * 177.72484 * 19 5 4 35 35 H 1.09007 * 109.46620 * 60.00167 * 21 20 19 36 36 H 1.08993 * 109.47357 * 180.02562 * 21 20 19 37 37 H 1.08997 * 109.47217 * 300.00794 * 21 20 19 38 38 H 1.09001 * 109.47103 * 59.99493 * 22 20 19 39 39 H 1.08998 * 109.47442 * 180.02562 * 22 20 19 40 40 H 1.09010 * 109.47109 * 300.00349 * 22 20 19 41 41 H 1.10232 * 108.73838 * 155.37838 * 23 2 1 42 42 H 1.10212 * 108.79790 * 40.30451 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5283 0.0000 0.0000 3 1 1.8459 1.0650 0.0000 4 6 2.0645 -0.6238 1.2807 5 6 1.8970 -2.1421 1.2542 6 1 0.8460 -2.4050 1.1673 7 6 2.4403 -2.7219 2.5389 8 8 3.6042 -3.0558 2.6091 9 7 1.6316 -2.8682 3.6071 10 6 0.2035 -2.5624 3.4922 11 6 2.1464 -3.2977 4.8029 12 1 3.0438 -3.8985 4.8199 13 6 1.5139 -2.9601 5.9931 14 7 1.6872 -3.7031 7.0631 15 14 0.4172 -1.4500 6.0723 16 1 -0.9943 -1.8509 5.8442 17 1 0.5420 -0.8171 7.4099 18 1 0.8321 -0.4816 5.0257 19 6 2.6886 -2.7060 0.0764 20 6 2.1607 -2.1566 -1.2442 21 6 3.1352 -2.5953 -2.3589 22 6 0.7954 -2.7732 -1.5606 23 6 2.0889 -0.6398 -1.2539 24 1 -0.3634 -1.0263 -0.0533 25 1 -0.3634 0.4670 0.9154 26 1 -0.3633 0.5592 -0.8622 27 1 1.5238 -0.2177 2.1399 28 1 3.1246 -0.3806 1.3909 29 1 -0.1496 -2.8441 2.5001 30 1 -0.3497 -3.1213 4.2470 31 1 0.0473 -1.4944 3.6437 32 1 1.2453 -3.4676 7.8939 33 1 3.7420 -2.4364 0.1872 34 1 2.6062 -3.7960 0.0754 35 1 3.1819 -3.6838 -2.3929 36 1 2.7840 -2.2161 -3.3185 37 1 4.1278 -2.1954 -2.1518 38 1 0.0928 -2.5282 -0.7640 39 1 0.4270 -2.3748 -2.5059 40 1 0.8947 -3.8561 -1.6370 41 1 3.1015 -0.2423 -1.4319 42 1 1.4810 -0.3223 -2.1168 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336162956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:23 Heat of formation + Delta-G solvation = -75.041897 kcal Electronic energy + Delta-G solvation = -20418.849378 eV Core-core repulsion = 17590.262351 eV Total energy + Delta-G solvation = -2828.587027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 6.36 seconds Orbital eigenvalues (eV) -41.39352 -39.48788 -36.78379 -35.04558 -34.15324 -32.81865 -28.47130 -28.23368 -27.40414 -27.27537 -27.00554 -24.07591 -21.45140 -20.33940 -19.08460 -18.96651 -17.77312 -17.27191 -16.41478 -16.14303 -15.32950 -15.24131 -15.17253 -14.95420 -14.66750 -14.53542 -14.08780 -13.94786 -13.76149 -13.59685 -13.17589 -12.91200 -12.60788 -12.52450 -12.46998 -12.37863 -12.13335 -11.89870 -11.79491 -11.71254 -11.59389 -11.32437 -11.15443 -10.96032 -10.70856 -10.20128 -9.83763 -8.53806 -6.08067 1.20370 1.31704 1.43147 1.90317 2.16431 2.69168 2.98359 3.63606 3.71608 3.77295 4.09823 4.15659 4.20849 4.24297 4.28525 4.34804 4.47529 4.51174 4.57031 4.69698 4.76286 4.83296 4.87472 4.92711 4.99933 5.01661 5.10240 5.16788 5.19054 5.21060 5.26473 5.30908 5.42668 5.46994 5.50422 5.57545 5.63005 5.72130 5.99404 6.51043 6.91439 7.31146 7.87262 8.64055 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.006944 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.663335 B = 4031.023740 C = 4497.313477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 H 0.072 0.928 4 C -0.096 4.096 5 C -0.083 4.083 6 H 0.107 0.893 7 C 0.453 3.547 8 O -0.625 6.625 9 N -0.480 5.480 10 C 0.048 3.952 11 C -0.343 4.343 12 H 0.045 0.955 13 C 0.007 3.993 14 N -0.912 5.912 15 Si 0.954 3.046 16 H -0.237 1.237 17 H -0.291 1.291 18 H -0.255 1.255 19 C -0.082 4.082 20 C -0.053 4.053 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.096 4.096 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.281 0.719 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 9.210 -19.010 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 H 0.090 0.910 4 C -0.134 4.134 5 C -0.104 4.104 6 H 0.125 0.875 7 C 0.243 3.757 8 O -0.511 6.511 9 N -0.201 5.201 10 C -0.094 4.094 11 C -0.471 4.471 12 H 0.063 0.937 13 C -0.194 4.194 14 N -0.550 5.550 15 Si 0.776 3.224 16 H -0.161 1.161 17 H -0.218 1.218 18 H -0.180 1.180 19 C -0.121 4.121 20 C -0.054 4.054 21 C -0.200 4.200 22 C -0.199 4.199 23 C -0.133 4.133 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.184 8.989 -18.770 22.362 hybrid contribution 0.461 -0.061 1.199 1.286 sum -7.723 8.929 -17.571 21.168 Atomic orbital electron populations 1.21978 0.93724 1.02686 1.02313 1.20741 0.96863 0.99415 0.92565 0.90954 1.21326 1.00730 0.92237 0.99139 1.21130 1.01539 0.97032 0.90686 0.87511 1.21516 0.85689 0.81444 0.87022 1.90491 1.20215 1.55144 1.85259 1.43863 1.07451 1.59525 1.09245 1.22305 0.81468 1.01171 1.04435 1.18788 1.12406 1.32050 0.83862 0.93738 1.26115 0.99314 1.00100 0.93921 1.69910 1.44524 1.37423 1.03123 0.85883 0.79807 0.79191 0.77478 1.16119 1.21806 1.17952 1.21265 0.98613 0.98987 0.93198 1.20366 0.96523 0.95478 0.92983 1.22248 0.98418 1.00989 0.98319 1.22048 0.95436 1.00191 1.02255 1.21250 1.01530 0.93111 0.97424 0.91916 0.92838 0.90828 0.92454 0.93869 0.87900 0.91047 0.91819 0.90983 0.93789 0.93689 0.93159 0.90741 0.93589 0.92051 0.90696 0.93225 0.92808 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.91 71.92 0.64 -1.87 16 2 C -0.08 -1.61 2.60 -11.59 -0.03 -1.64 16 3 H 0.07 1.37 8.29 -1.23 -0.01 1.36 16 4 C -0.10 -2.90 4.57 30.26 0.14 -2.76 16 5 C -0.08 -2.81 1.83 -11.60 -0.02 -2.83 16 6 H 0.11 3.08 4.08 -2.55 -0.01 3.07 16 7 C 0.45 22.12 6.67 87.77 0.59 22.71 16 8 O -0.63 -37.02 15.83 -3.07 -0.05 -37.07 16 9 N -0.48 -24.22 2.79 -658.43 -1.83 -26.05 16 10 C 0.05 1.82 7.79 127.77 1.00 2.82 16 11 C -0.34 -21.03 9.62 84.04 0.81 -20.22 16 12 H 0.04 3.22 7.63 -2.91 -0.02 3.20 16 13 C 0.01 0.41 5.15 84.92 0.44 0.84 16 14 N -0.91 -55.44 13.96 21.66 0.30 -55.14 16 15 Si 0.95 41.79 24.19 68.60 1.66 43.45 16 16 H -0.24 -8.93 6.91 99.48 0.69 -8.25 16 17 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.26 -10.66 6.46 99.48 0.64 -10.02 16 19 C -0.08 -2.61 3.36 30.32 0.10 -2.51 16 20 C -0.05 -1.16 0.71 -52.22 -0.04 -1.19 16 21 C -0.14 -2.78 8.08 72.46 0.59 -2.20 16 22 C -0.14 -2.55 8.00 72.02 0.58 -1.98 16 23 C -0.10 -1.81 4.12 29.74 0.12 -1.69 16 24 H 0.06 1.03 4.92 -2.38 -0.01 1.02 16 25 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 1.78 8.07 -2.21 -0.02 1.76 16 28 H 0.04 1.48 8.17 -2.22 -0.02 1.46 16 29 H 0.10 2.98 6.15 -2.39 -0.01 2.97 16 30 H 0.07 2.78 6.16 -2.39 -0.01 2.76 16 31 H 0.06 2.18 5.54 -2.39 -0.01 2.17 16 32 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 33 H 0.04 1.61 7.80 -2.23 -0.02 1.59 16 34 H 0.04 1.53 8.13 -2.23 -0.02 1.51 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 38 H 0.06 1.09 4.62 -2.39 -0.01 1.08 16 39 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 40 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.05 1.05 7.94 -1.73 -0.01 1.04 16 42 H 0.09 1.20 7.94 -1.74 -0.01 1.19 16 Total: -1.00 -75.88 309.21 5.91 -69.98 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.92 Total: 17.36 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.90 Total: -12.52 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.53 Total: -81.19 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.05 Total: -37.07 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.66 Total: 43.45 kcal Total: -75.88 5.91 -69.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336162956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.066 kcal (2) G-P(sol) polarization free energy of solvation -75.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.36 seconds