Wall clock time and date at job start Mon Mar 30 2020 07:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.52054 * 2 1 4 4 C 1.53350 * 109.68576 * 239.83329 * 2 1 3 5 5 C 1.53033 * 109.60977 * 178.74482 * 4 2 1 6 6 H 1.08997 * 109.50205 * 181.32595 * 5 4 2 7 7 C 1.53006 * 109.52308 * 301.41056 * 5 4 2 8 8 C 1.53191 * 109.31261 * 61.37177 * 5 4 2 9 9 H 1.09005 * 109.58788 * 65.15458 * 8 5 4 10 10 C 1.53004 * 109.59131 * 185.57857 * 8 5 4 11 11 N 1.46926 * 108.77727 * 305.37010 * 8 5 4 12 12 C 1.34787 * 120.62971 * 233.58408 * 11 8 5 13 13 O 1.21285 * 119.99838 * 354.41507 * 12 11 8 14 14 C 1.50700 * 119.99724 * 174.41014 * 12 11 8 15 15 C 1.53006 * 109.46516 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46516 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00513 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99597 * 179.97438 * 16 15 14 19 19 N 1.31505 * 120.00245 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99712 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47241 * 90.00596 * 20 18 16 22 22 H 1.48503 * 109.47064 * 210.00060 * 20 18 16 23 23 H 1.48494 * 109.47199 * 330.00185 * 20 18 16 24 24 C 1.46918 * 118.74003 * 53.60575 * 11 8 5 25 25 H 1.09003 * 109.47237 * 299.91375 * 1 2 3 26 26 H 1.08995 * 109.47178 * 59.92458 * 1 2 3 27 27 H 1.09006 * 109.46663 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.41599 * 58.70968 * 4 2 1 29 29 H 1.08995 * 109.41980 * 298.78631 * 4 2 1 30 30 H 1.08999 * 109.46963 * 179.85193 * 7 5 4 31 31 H 1.09004 * 109.46964 * 299.84794 * 7 5 4 32 32 H 1.08998 * 109.47163 * 59.84983 * 7 5 4 33 33 H 1.08997 * 109.47223 * 186.94312 * 10 8 5 34 34 H 1.08997 * 109.46953 * 306.94442 * 10 8 5 35 35 H 1.09008 * 109.46503 * 66.94285 * 10 8 5 36 36 H 1.08997 * 109.47353 * 299.99800 * 14 12 11 37 37 H 1.08998 * 109.46973 * 60.00776 * 14 12 11 38 38 H 1.08997 * 109.47054 * 299.99870 * 15 14 12 39 39 H 1.09000 * 109.47347 * 60.00289 * 15 14 12 40 40 H 0.97001 * 120.00319 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.59049 * 66.18191 * 24 11 8 42 42 H 1.09002 * 109.58596 * 186.46467 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0466 -0.7256 -1.2483 5 6 3.5766 -0.6973 -1.2625 6 1 3.9414 -1.1928 -2.1623 7 6 4.0614 0.7538 -1.2465 8 6 4.1083 -1.4276 -0.0253 9 1 3.8409 -2.4829 -0.0808 10 6 5.6302 -1.2841 0.0406 11 7 3.5048 -0.8290 1.1730 12 6 4.2790 -0.3851 2.1832 13 8 5.4775 -0.5688 2.1545 14 6 3.6553 0.3395 3.3481 15 6 4.7458 0.7333 4.3465 16 6 4.1220 1.4574 5.5117 17 1 3.0547 1.6200 5.5378 18 6 4.9140 1.9113 6.5451 19 7 6.2136 1.7129 6.5136 20 14 4.1408 2.8082 7.9898 21 1 3.7659 1.8262 9.0389 22 1 5.1148 3.7806 8.5475 23 1 2.9270 3.5307 7.5317 24 6 2.0414 -0.7238 1.2496 25 1 -0.3634 0.5125 0.8908 26 1 -0.3633 0.5150 -0.8893 27 1 -0.3633 -1.0278 -0.0005 28 1 1.6660 -0.2279 -2.1402 29 1 1.7026 -1.7597 -1.2348 30 1 5.1512 0.7729 -1.2540 31 1 3.6829 1.2731 -2.1270 32 1 3.6955 1.2492 -0.3472 33 1 6.0190 -1.9042 0.8482 34 1 6.0666 -1.6041 -0.9056 35 1 5.8890 -0.2415 0.2260 36 1 3.1501 1.2364 2.9898 37 1 2.9328 -0.3136 3.8375 38 1 5.2513 -0.1634 4.7048 39 1 5.4680 1.3865 3.8569 40 1 6.7708 2.0326 7.2404 41 1 1.6053 -1.7216 1.2980 42 1 1.7616 -0.1592 2.1390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360493268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:44 Heat of formation + Delta-G solvation = -51.260172 kcal Electronic energy + Delta-G solvation = -19904.288107 eV Core-core repulsion = 17076.732333 eV Total energy + Delta-G solvation = -2827.555774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47216 -37.68039 -34.34875 -33.36136 -33.26708 -30.94538 -29.12940 -26.98332 -26.01817 -25.38555 -23.74681 -21.96975 -20.77935 -19.38348 -18.12091 -16.72963 -16.01680 -15.63967 -15.14096 -14.97288 -14.42999 -14.20181 -14.18415 -13.67708 -13.24370 -12.86518 -12.45873 -12.18576 -12.10904 -12.02901 -11.95293 -11.71871 -11.53110 -11.41706 -11.06133 -10.91292 -10.87013 -10.67945 -10.57006 -10.48038 -10.21105 -9.91402 -9.52374 -9.07787 -8.43066 -8.31557 -8.19445 -5.94208 -3.98370 3.27712 3.34273 3.35233 3.40682 3.43369 4.48278 4.56085 4.69204 4.72422 4.87487 5.11983 5.27185 5.31960 5.40772 5.42680 5.47495 5.55243 5.58813 5.64212 5.74434 5.76113 5.83962 5.90380 5.96034 5.98276 6.09107 6.15196 6.20127 6.24721 6.25821 6.37982 6.46766 6.68944 6.93399 7.03799 7.76692 7.87789 7.89670 8.09706 8.41674 8.85424 9.10374 9.65026 11.16754 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.005353 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.625289 B = 5229.121624 C = 5904.760876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.107 4.107 5 C -0.103 4.103 6 H 0.075 0.925 7 C -0.147 4.147 8 C 0.148 3.852 9 H 0.061 0.939 10 C -0.137 4.137 11 N -0.620 5.620 12 C 0.512 3.488 13 O -0.526 6.526 14 C -0.130 4.130 15 C 0.038 3.962 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.114 3.886 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 -5.211 -16.624 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 H 0.098 0.902 4 C -0.145 4.145 5 C -0.122 4.122 6 H 0.094 0.906 7 C -0.204 4.204 8 C 0.045 3.955 9 H 0.079 0.921 10 C -0.194 4.194 11 N -0.355 5.355 12 C 0.303 3.697 13 O -0.402 6.402 14 C -0.170 4.170 15 C 0.001 3.999 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.010 4.010 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.612 -5.274 -16.515 19.823 hybrid contribution -0.544 0.479 0.759 1.050 sum -10.157 -4.796 -15.756 19.349 Atomic orbital electron populations 1.21762 0.94628 1.01848 1.02001 1.21634 0.95578 1.00702 0.95165 0.90202 1.21648 0.94911 1.00394 0.97548 1.21547 0.95473 0.97312 0.97912 0.90639 1.21879 1.01460 0.95456 1.01616 1.21175 0.94635 0.95531 0.84148 0.92061 1.22230 0.92646 1.04536 1.00029 1.48287 1.06345 1.62608 1.18290 1.21468 0.87156 0.77874 0.83228 1.90700 1.15279 1.56191 1.77995 1.21905 1.01883 0.98907 0.94321 1.18889 0.92248 0.97122 0.91660 1.21225 0.93697 1.36827 1.04700 0.92703 1.25015 0.94794 0.96207 0.98309 1.69993 1.03931 1.46403 1.32527 0.86610 0.79016 0.79615 0.82821 1.20682 1.21232 1.19907 1.21737 0.80113 1.00432 0.98696 0.92237 0.92571 0.92662 0.91956 0.92040 0.92303 0.93213 0.92079 0.90574 0.94614 0.90941 0.90529 0.90569 0.95896 0.95896 0.92982 0.91949 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.21 37.16 0.34 -0.83 16 2 C -0.11 -1.12 2.54 -90.34 -0.23 -1.35 16 3 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 4 C -0.11 -1.01 4.73 -26.53 -0.13 -1.13 16 5 C -0.10 -1.12 2.80 -90.50 -0.25 -1.38 16 6 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.15 -1.74 8.21 37.16 0.31 -1.44 16 8 C 0.15 1.99 3.20 -67.60 -0.22 1.78 16 9 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 10 C -0.14 -2.11 6.86 37.16 0.25 -1.85 16 11 N -0.62 -9.34 2.41 -165.22 -0.40 -9.74 16 12 C 0.51 10.03 7.49 -10.98 -0.08 9.95 16 13 O -0.53 -12.06 11.55 5.55 0.06 -12.00 16 14 C -0.13 -2.70 3.99 -27.88 -0.11 -2.81 16 15 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 16 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.60 13.28 55.43 0.74 -26.86 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.11 1.36 5.62 -3.71 -0.02 1.34 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.75 6.52 -51.93 -0.34 0.41 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.83 5.98 -51.93 -0.31 0.52 16 33 H 0.08 1.36 6.68 -51.93 -0.35 1.01 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 1.28 5.46 -51.92 -0.28 0.99 16 36 H 0.08 1.48 7.92 -51.93 -0.41 1.06 16 37 H 0.08 1.46 7.71 -51.93 -0.40 1.06 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.11 5.93 -51.93 -0.31 0.80 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -32.20 317.82 -7.83 -40.04 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -7.34 Total: -2.44 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.67 Total: -10.54 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.34 Total: -36.60 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.06 Total: -12.00 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.20 -7.83 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360493268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.225 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds