Wall clock time and date at job start Mon Mar 30 2020 07:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.52054 * 2 1 4 4 C 1.53350 * 109.68576 * 239.83329 * 2 1 3 5 5 C 1.53033 * 109.60977 * 178.74482 * 4 2 1 6 6 H 1.08997 * 109.50205 * 181.32595 * 5 4 2 7 7 C 1.53006 * 109.52308 * 301.41056 * 5 4 2 8 8 C 1.53191 * 109.31261 * 61.37177 * 5 4 2 9 9 H 1.09005 * 109.58788 * 65.15458 * 8 5 4 10 10 C 1.53004 * 109.59131 * 185.57857 * 8 5 4 11 11 N 1.46926 * 108.77727 * 305.37010 * 8 5 4 12 12 C 1.34787 * 120.62971 * 233.58408 * 11 8 5 13 13 O 1.21285 * 119.99838 * 354.41507 * 12 11 8 14 14 C 1.50700 * 119.99724 * 174.41014 * 12 11 8 15 15 C 1.53006 * 109.46516 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46516 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00513 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99597 * 179.97438 * 16 15 14 19 19 N 1.31505 * 120.00245 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99712 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47241 * 90.00596 * 20 18 16 22 22 H 1.48503 * 109.47064 * 210.00060 * 20 18 16 23 23 H 1.48494 * 109.47199 * 330.00185 * 20 18 16 24 24 C 1.46918 * 118.74003 * 53.60575 * 11 8 5 25 25 H 1.09003 * 109.47237 * 299.91375 * 1 2 3 26 26 H 1.08995 * 109.47178 * 59.92458 * 1 2 3 27 27 H 1.09006 * 109.46663 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.41599 * 58.70968 * 4 2 1 29 29 H 1.08995 * 109.41980 * 298.78631 * 4 2 1 30 30 H 1.08999 * 109.46963 * 179.85193 * 7 5 4 31 31 H 1.09004 * 109.46964 * 299.84794 * 7 5 4 32 32 H 1.08998 * 109.47163 * 59.84983 * 7 5 4 33 33 H 1.08997 * 109.47223 * 186.94312 * 10 8 5 34 34 H 1.08997 * 109.46953 * 306.94442 * 10 8 5 35 35 H 1.09008 * 109.46503 * 66.94285 * 10 8 5 36 36 H 1.08997 * 109.47353 * 299.99800 * 14 12 11 37 37 H 1.08998 * 109.46973 * 60.00776 * 14 12 11 38 38 H 1.08997 * 109.47054 * 299.99870 * 15 14 12 39 39 H 1.09000 * 109.47347 * 60.00289 * 15 14 12 40 40 H 0.97001 * 120.00319 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.59049 * 66.18191 * 24 11 8 42 42 H 1.09002 * 109.58596 * 186.46467 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0466 -0.7256 -1.2483 5 6 3.5766 -0.6973 -1.2625 6 1 3.9414 -1.1928 -2.1623 7 6 4.0614 0.7538 -1.2465 8 6 4.1083 -1.4276 -0.0253 9 1 3.8409 -2.4829 -0.0808 10 6 5.6302 -1.2841 0.0406 11 7 3.5048 -0.8290 1.1730 12 6 4.2790 -0.3851 2.1832 13 8 5.4775 -0.5688 2.1545 14 6 3.6553 0.3395 3.3481 15 6 4.7458 0.7333 4.3465 16 6 4.1220 1.4574 5.5117 17 1 3.0547 1.6200 5.5378 18 6 4.9140 1.9113 6.5451 19 7 6.2136 1.7129 6.5136 20 14 4.1408 2.8082 7.9898 21 1 3.7659 1.8262 9.0389 22 1 5.1148 3.7806 8.5475 23 1 2.9270 3.5307 7.5317 24 6 2.0414 -0.7238 1.2496 25 1 -0.3634 0.5125 0.8908 26 1 -0.3633 0.5150 -0.8893 27 1 -0.3633 -1.0278 -0.0005 28 1 1.6660 -0.2279 -2.1402 29 1 1.7026 -1.7597 -1.2348 30 1 5.1512 0.7729 -1.2540 31 1 3.6829 1.2731 -2.1270 32 1 3.6955 1.2492 -0.3472 33 1 6.0190 -1.9042 0.8482 34 1 6.0666 -1.6041 -0.9056 35 1 5.8890 -0.2415 0.2260 36 1 3.1501 1.2364 2.9898 37 1 2.9328 -0.3136 3.8375 38 1 5.2513 -0.1634 4.7048 39 1 5.4680 1.3865 3.8569 40 1 6.7708 2.0326 7.2404 41 1 1.6053 -1.7216 1.2980 42 1 1.7616 -0.1592 2.1390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360493268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:44 Heat of formation + Delta-G solvation = -70.213187 kcal Electronic energy + Delta-G solvation = -19905.109972 eV Core-core repulsion = 17076.732333 eV Total energy + Delta-G solvation = -2828.377638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.71613 -38.97365 -35.80576 -34.97239 -34.54854 -32.84231 -30.30003 -28.05476 -27.50813 -26.70047 -24.94819 -23.62552 -21.92373 -20.66757 -19.38218 -18.62148 -17.33862 -17.18106 -16.60956 -16.28724 -15.95986 -15.43712 -15.12777 -14.79161 -14.72115 -14.17851 -13.95557 -13.86917 -13.41019 -13.18932 -12.89290 -12.86675 -12.76429 -12.66689 -12.59815 -12.44909 -12.35069 -11.92448 -11.82537 -11.67420 -11.54451 -11.37364 -11.28459 -11.03707 -10.57538 -9.95845 -9.43676 -8.18588 -6.32906 1.41083 1.44093 1.54993 1.74681 2.09638 2.42747 3.14255 3.62637 3.79089 3.87489 3.96032 4.05037 4.21479 4.32986 4.46498 4.47719 4.50463 4.56840 4.64303 4.70861 4.75923 4.79841 4.88474 4.94514 5.05042 5.07606 5.10029 5.13319 5.20587 5.30120 5.35624 5.43469 5.46400 5.49846 5.59406 5.62058 5.80941 5.85728 6.17265 6.50662 6.85564 7.35675 7.38656 8.94130 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.005353 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.625289 B = 5229.121624 C = 5904.760876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 H 0.065 0.935 4 C -0.103 4.103 5 C -0.096 4.096 6 H 0.098 0.902 7 C -0.146 4.146 8 C 0.143 3.857 9 H 0.081 0.919 10 C -0.130 4.130 11 N -0.608 5.608 12 C 0.508 3.492 13 O -0.573 6.573 14 C -0.117 4.117 15 C 0.047 3.953 16 C -0.543 4.543 17 H 0.074 0.926 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.255 1.255 24 C 0.104 3.896 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.097 0.903 38 H -0.019 1.019 39 H -0.020 1.020 40 H 0.263 0.737 41 H 0.084 0.916 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.802 -5.399 -17.865 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 H 0.083 0.917 4 C -0.140 4.140 5 C -0.115 4.115 6 H 0.116 0.884 7 C -0.203 4.203 8 C 0.041 3.959 9 H 0.098 0.902 10 C -0.187 4.187 11 N -0.341 5.341 12 C 0.298 3.702 13 O -0.453 6.453 14 C -0.157 4.157 15 C 0.009 3.991 16 C -0.581 4.581 17 H 0.092 0.908 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.797 3.203 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.179 1.179 24 C -0.018 4.018 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.115 0.885 38 H -0.001 1.001 39 H -0.001 1.001 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.025 -5.476 -17.798 22.725 hybrid contribution 0.532 0.506 1.084 1.309 sum -12.493 -4.970 -16.715 21.451 Atomic orbital electron populations 1.21721 0.92715 1.02776 1.02482 1.21593 0.97012 0.99626 0.94428 0.91679 1.21649 0.93166 1.01442 0.97743 1.21540 0.96903 0.96064 0.97018 0.88359 1.21859 1.00428 0.96537 1.01463 1.21404 0.93143 0.96898 0.84499 0.90162 1.22044 0.94693 1.01917 1.00051 1.48238 1.07619 1.60832 1.17440 1.21221 0.86743 0.78176 0.84057 1.90706 1.17195 1.58243 1.79126 1.21641 0.99959 1.00317 0.93791 1.18651 0.93103 0.94377 0.92968 1.21698 0.94690 1.36676 1.05058 0.90808 1.26132 0.95189 0.97074 1.01922 1.70176 1.05962 1.47788 1.33839 0.85324 0.78392 0.78194 0.78357 1.19612 1.21111 1.17918 1.22071 0.77782 1.02027 0.99924 0.92459 0.91488 0.91484 0.90111 0.90505 0.93971 0.91131 0.94297 0.93846 0.91899 0.93958 0.88820 0.88523 1.00051 1.00141 0.92848 0.89769 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.21 71.98 0.66 -1.08 16 2 C -0.11 -1.83 2.54 -10.61 -0.03 -1.86 16 3 H 0.06 1.33 6.34 -2.39 -0.02 1.32 16 4 C -0.10 -1.50 4.73 30.72 0.15 -1.35 16 5 C -0.10 -1.83 2.80 -10.72 -0.03 -1.86 16 6 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 7 C -0.15 -3.29 8.21 71.98 0.59 -2.69 16 8 C 0.14 3.65 3.20 44.98 0.14 3.80 16 9 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 10 C -0.13 -4.10 6.86 71.98 0.49 -3.61 16 11 N -0.61 -17.95 2.41 -795.01 -1.92 -19.87 16 12 C 0.51 20.65 7.49 87.66 0.66 21.31 16 13 O -0.57 -28.24 11.55 -3.05 -0.04 -28.27 16 14 C -0.12 -4.98 3.99 29.85 0.12 -4.86 16 15 C 0.05 2.67 4.26 29.85 0.13 2.80 16 16 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 17 H 0.07 3.92 7.74 -2.91 -0.02 3.89 16 18 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 19 N -0.94 -60.37 13.28 21.45 0.28 -60.09 16 20 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 C 0.10 2.24 5.62 86.36 0.49 2.73 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 1.07 6.52 -2.39 -0.02 1.06 16 31 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.04 1.04 5.98 -2.39 -0.01 1.03 16 33 H 0.04 1.63 6.68 -2.39 -0.02 1.62 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.58 5.46 -2.38 -0.01 1.57 16 36 H 0.09 3.61 7.92 -2.39 -0.02 3.59 16 37 H 0.10 3.67 7.71 -2.39 -0.02 3.65 16 38 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 39 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 40 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 1.94 5.93 -2.39 -0.01 1.93 16 Total: -1.00 -74.71 317.82 5.39 -69.31 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.97 Total: 9.97 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 4.06 Total: -17.90 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -1.63 Total: -79.96 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.04 Total: -28.27 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -74.71 5.39 -69.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360493268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.899 kcal (2) G-P(sol) polarization free energy of solvation -74.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds