Wall clock time and date at job start Mon Mar 30 2020 07:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53092 * 109.47513 * 239.97649 * 2 1 3 5 5 C 1.53186 * 109.15877 * 182.39584 * 4 2 1 6 6 H 1.09001 * 109.54370 * 297.02783 * 5 4 2 7 7 N 1.46894 * 109.54378 * 176.84382 * 5 4 2 8 8 C 1.46899 * 110.99976 * 154.99849 * 7 5 4 9 9 H 1.09000 * 110.43594 * 323.91947 * 8 7 5 10 10 C 1.54893 * 110.48451 * 86.45784 * 8 7 5 11 11 C 1.54889 * 102.74722 * 156.62002 * 10 8 7 12 12 C 1.54262 * 104.19795 * 322.05668 * 11 10 8 13 13 H 1.08999 * 110.03539 * 264.27378 * 12 11 10 14 14 C 1.50703 * 110.03221 * 142.89407 * 12 11 10 15 15 H 1.07995 * 120.00375 * 245.25247 * 14 12 11 16 16 C 1.37877 * 119.99992 * 65.24900 * 14 12 11 17 17 N 1.31519 * 119.99966 * 6.63372 * 16 14 12 18 18 Si 1.86796 * 120.00278 * 186.35852 * 16 14 12 19 19 H 1.48498 * 109.47124 * 84.98851 * 18 16 14 20 20 H 1.48502 * 109.47249 * 204.99429 * 18 16 14 21 21 H 1.48503 * 109.46804 * 324.99007 * 18 16 14 22 22 C 1.53873 * 106.59986 * 23.61366 * 12 11 10 23 23 C 1.53176 * 109.03339 * 56.98121 * 5 4 2 24 24 C 1.53095 * 109.16552 * 303.01665 * 23 5 4 25 25 O 1.42899 * 109.41219 * 57.61146 * 24 23 5 26 26 H 1.09001 * 109.47020 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46787 * 300.02666 * 1 2 3 28 28 H 1.09000 * 109.47213 * 60.02149 * 1 2 3 29 29 H 1.08999 * 109.52382 * 62.49374 * 4 2 1 30 30 H 1.08999 * 109.52314 * 302.29989 * 4 2 1 31 31 H 1.00902 * 111.00449 * 278.95998 * 7 5 4 32 32 H 1.08999 * 110.75398 * 38.30714 * 10 8 7 33 33 H 1.09003 * 110.75673 * 274.93888 * 10 8 7 34 34 H 1.08999 * 110.48659 * 203.37401 * 11 10 8 35 35 H 1.08997 * 110.48640 * 80.74029 * 11 10 8 36 36 H 0.96996 * 120.00140 * 179.72235 * 17 16 14 37 37 H 1.08994 * 110.03645 * 119.28472 * 22 12 11 38 38 H 1.09004 * 110.03344 * 240.71701 * 22 12 11 39 39 H 1.08997 * 109.52572 * 62.92712 * 23 5 4 40 40 H 1.09004 * 109.52337 * 183.11442 * 23 5 4 41 41 H 1.08997 * 109.48088 * 297.63289 * 24 23 5 42 42 H 1.08998 * 109.49000 * 177.60174 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 3.5711 -0.7705 -1.2124 6 1 3.9688 0.2439 -1.2427 7 7 4.0671 -1.5276 -2.3694 8 6 5.4368 -1.1241 -2.7147 9 1 5.5710 -0.0547 -2.5516 10 6 6.4654 -1.9323 -1.8852 11 6 7.7441 -1.8530 -2.7556 12 6 7.2232 -1.9578 -4.2038 13 1 7.2834 -2.9900 -4.5486 14 6 8.0310 -1.0637 -5.1089 15 1 7.5629 -0.2180 -5.5906 16 6 9.3678 -1.3254 -5.3221 17 7 9.9072 -2.4251 -4.8431 18 14 10.4112 -0.1219 -6.2980 19 1 10.9104 0.9459 -5.3948 20 1 11.5634 -0.8402 -6.8995 21 1 9.5892 0.4852 -7.3755 22 6 5.7562 -1.4942 -4.1779 23 6 4.0179 -1.4597 0.0805 24 6 3.4310 -0.7090 1.2788 25 8 2.0069 -0.6741 1.1663 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8897 28 1 -0.3633 0.5135 -0.8902 29 1 1.7146 -0.1842 -2.1399 30 1 1.6444 -1.7374 -1.2710 31 1 4.0144 -2.5211 -2.2011 32 1 6.1407 -2.9663 -1.7689 33 1 6.6298 -1.4662 -0.9137 34 1 8.4118 -2.6844 -2.5293 35 1 8.2525 -0.9014 -2.6009 36 1 10.8467 -2.6112 -4.9965 37 1 5.6285 -0.6227 -4.8199 38 1 5.1035 -2.3017 -4.5097 39 1 3.6617 -2.4898 0.0861 40 1 5.1061 -1.4492 0.1417 41 1 3.8193 0.3093 1.2955 42 1 3.7105 -1.2198 2.2003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378788546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:29 Heat of formation + Delta-G solvation = -73.019434 kcal Electronic energy + Delta-G solvation = -19381.363974 eV Core-core repulsion = 16552.864648 eV Total energy + Delta-G solvation = -2828.499326 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.75482 -37.74026 -34.95592 -32.92181 -32.36165 -30.45267 -28.20547 -27.64720 -26.02749 -23.64219 -23.45253 -21.79942 -20.66981 -19.52936 -18.76052 -16.55741 -16.39481 -16.09227 -15.40633 -14.94601 -14.50442 -14.34802 -14.18957 -13.67613 -13.13558 -12.65862 -12.51360 -12.38468 -12.21316 -11.97593 -11.72820 -11.52547 -11.23892 -11.18861 -11.15545 -10.81952 -10.59136 -10.48534 -10.39480 -10.01294 -9.83484 -9.54445 -9.52983 -9.14037 -8.73717 -8.32434 -7.95981 -5.98287 -3.99094 3.32244 3.38755 3.41636 3.66133 4.30066 4.47090 4.72398 4.79991 4.85977 5.04554 5.13528 5.24488 5.31493 5.34293 5.43862 5.51024 5.57472 5.61975 5.67912 5.77351 5.83784 5.89161 5.92369 6.03781 6.13665 6.21523 6.30353 6.49866 6.61091 6.72308 6.85820 7.08382 7.14668 7.16729 7.33843 7.54418 7.72025 7.74186 7.91965 8.05034 8.51528 9.04439 9.63941 11.11765 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.045342 B = 0.004104 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.387241 B = 6821.768754 C = 7037.145305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 H 0.055 0.945 4 C -0.136 4.136 5 C 0.087 3.913 6 H 0.074 0.926 7 N -0.678 5.678 8 C 0.086 3.914 9 H 0.072 0.928 10 C -0.156 4.156 11 C -0.094 4.094 12 C 0.042 3.958 13 H 0.030 0.970 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.101 4.101 23 C -0.189 4.189 24 C 0.066 3.934 25 O -0.384 6.384 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.339 0.661 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.259 0.741 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.346 3.264 10.827 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 H 0.073 0.927 4 C -0.174 4.174 5 C -0.023 4.023 6 H 0.092 0.908 7 N -0.306 5.306 8 C -0.024 4.024 9 H 0.091 0.909 10 C -0.195 4.195 11 C -0.132 4.132 12 C 0.023 3.977 13 H 0.048 0.952 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.714 3.286 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.140 4.140 23 C -0.229 4.229 24 C -0.011 4.011 25 O -0.303 6.303 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.157 0.843 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.600 3.502 10.462 18.300 hybrid contribution 1.568 0.270 0.056 1.592 sum -13.033 3.772 10.518 17.167 Atomic orbital electron populations 1.21751 0.93200 1.02858 1.02225 1.22124 0.94933 0.95028 0.85229 0.92656 1.22225 0.95481 1.01897 0.97832 1.21621 0.94595 0.97846 0.88281 0.90758 1.60726 1.23818 1.09467 1.36636 1.22578 0.84532 0.98374 0.96870 0.90935 1.23346 0.99507 0.98706 0.97970 1.22269 0.93966 1.00606 0.96392 1.19260 0.89075 0.96991 0.92342 0.95171 1.21298 0.94312 1.11721 1.27667 0.92701 1.24993 0.98170 0.95052 0.95798 1.69975 1.12709 1.23834 1.46397 0.86705 0.80101 0.81440 0.80319 1.20706 1.21389 1.19988 1.22258 0.98521 1.00024 0.93159 1.23113 1.02181 1.00889 0.96687 1.22493 0.80860 0.99461 0.98294 1.87894 1.21091 1.78096 1.43244 0.91861 0.92104 0.91055 0.90386 0.91164 0.84274 0.92789 0.93632 0.92948 0.93052 0.93157 0.92657 0.93533 0.91097 0.90163 0.93359 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.57 37.16 0.36 -0.89 16 2 C 0.08 0.89 3.26 -26.68 -0.09 0.81 16 3 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.14 -1.54 5.03 -26.59 -0.13 -1.68 16 5 C 0.09 1.11 2.55 -67.53 -0.17 0.93 16 6 H 0.07 0.99 7.47 -51.93 -0.39 0.61 16 7 N -0.68 -10.06 6.07 -97.81 -0.59 -10.65 16 8 C 0.09 1.51 3.16 -66.05 -0.21 1.30 16 9 H 0.07 1.31 7.51 -51.93 -0.39 0.92 16 10 C -0.16 -2.81 5.39 -24.74 -0.13 -2.94 16 11 C -0.09 -2.14 5.73 -25.07 -0.14 -2.28 16 12 C 0.04 1.05 2.73 -90.66 -0.25 0.80 16 13 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 14 C -0.51 -14.09 8.33 -34.44 -0.29 -14.38 16 15 H 0.05 1.50 7.34 -52.49 -0.39 1.11 16 16 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 17 N -0.89 -25.84 12.89 55.43 0.71 -25.13 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.10 -2.11 6.18 -25.61 -0.16 -2.27 16 23 C -0.19 -2.22 5.14 -26.59 -0.14 -2.36 16 24 C 0.07 0.71 6.84 37.21 0.25 0.97 16 25 O -0.38 -4.63 10.41 -35.23 -0.37 -5.00 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.34 4.88 8.01 -39.29 -0.31 4.57 16 32 H 0.05 0.93 7.82 -51.93 -0.41 0.53 16 33 H 0.05 0.75 6.59 -51.93 -0.34 0.40 16 34 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.05 1.19 7.37 -51.93 -0.38 0.81 16 38 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 39 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.08 0.99 5.69 -51.93 -0.30 0.69 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -28.46 320.91 -9.13 -37.59 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.51 Total: 2.33 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.19 Total: -20.37 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.12 Total: -35.78 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.37 Total: -5.00 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.46 -9.13 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378788546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.430 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds