Wall clock time and date at job start Mon Mar 30 2020 07:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53092 * 109.47513 * 239.97649 * 2 1 3 5 5 C 1.53186 * 109.15877 * 182.39584 * 4 2 1 6 6 H 1.09001 * 109.54370 * 297.02783 * 5 4 2 7 7 N 1.46894 * 109.54378 * 176.84382 * 5 4 2 8 8 C 1.46899 * 110.99976 * 154.99849 * 7 5 4 9 9 H 1.09000 * 110.43594 * 323.91947 * 8 7 5 10 10 C 1.54893 * 110.48451 * 86.45784 * 8 7 5 11 11 C 1.54889 * 102.74722 * 156.62002 * 10 8 7 12 12 C 1.54262 * 104.19795 * 322.05668 * 11 10 8 13 13 H 1.08999 * 110.03539 * 264.27378 * 12 11 10 14 14 C 1.50703 * 110.03221 * 142.89407 * 12 11 10 15 15 H 1.07995 * 120.00375 * 245.25247 * 14 12 11 16 16 C 1.37877 * 119.99992 * 65.24900 * 14 12 11 17 17 N 1.31519 * 119.99966 * 6.63372 * 16 14 12 18 18 Si 1.86796 * 120.00278 * 186.35852 * 16 14 12 19 19 H 1.48498 * 109.47124 * 84.98851 * 18 16 14 20 20 H 1.48502 * 109.47249 * 204.99429 * 18 16 14 21 21 H 1.48503 * 109.46804 * 324.99007 * 18 16 14 22 22 C 1.53873 * 106.59986 * 23.61366 * 12 11 10 23 23 C 1.53176 * 109.03339 * 56.98121 * 5 4 2 24 24 C 1.53095 * 109.16552 * 303.01665 * 23 5 4 25 25 O 1.42899 * 109.41219 * 57.61146 * 24 23 5 26 26 H 1.09001 * 109.47020 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46787 * 300.02666 * 1 2 3 28 28 H 1.09000 * 109.47213 * 60.02149 * 1 2 3 29 29 H 1.08999 * 109.52382 * 62.49374 * 4 2 1 30 30 H 1.08999 * 109.52314 * 302.29989 * 4 2 1 31 31 H 1.00902 * 111.00449 * 278.95998 * 7 5 4 32 32 H 1.08999 * 110.75398 * 38.30714 * 10 8 7 33 33 H 1.09003 * 110.75673 * 274.93888 * 10 8 7 34 34 H 1.08999 * 110.48659 * 203.37401 * 11 10 8 35 35 H 1.08997 * 110.48640 * 80.74029 * 11 10 8 36 36 H 0.96996 * 120.00140 * 179.72235 * 17 16 14 37 37 H 1.08994 * 110.03645 * 119.28472 * 22 12 11 38 38 H 1.09004 * 110.03344 * 240.71701 * 22 12 11 39 39 H 1.08997 * 109.52572 * 62.92712 * 23 5 4 40 40 H 1.09004 * 109.52337 * 183.11442 * 23 5 4 41 41 H 1.08997 * 109.48088 * 297.63289 * 24 23 5 42 42 H 1.08998 * 109.49000 * 177.60174 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 3.5711 -0.7705 -1.2124 6 1 3.9688 0.2439 -1.2427 7 7 4.0671 -1.5276 -2.3694 8 6 5.4368 -1.1241 -2.7147 9 1 5.5710 -0.0547 -2.5516 10 6 6.4654 -1.9323 -1.8852 11 6 7.7441 -1.8530 -2.7556 12 6 7.2232 -1.9578 -4.2038 13 1 7.2834 -2.9900 -4.5486 14 6 8.0310 -1.0637 -5.1089 15 1 7.5629 -0.2180 -5.5906 16 6 9.3678 -1.3254 -5.3221 17 7 9.9072 -2.4251 -4.8431 18 14 10.4112 -0.1219 -6.2980 19 1 10.9104 0.9459 -5.3948 20 1 11.5634 -0.8402 -6.8995 21 1 9.5892 0.4852 -7.3755 22 6 5.7562 -1.4942 -4.1779 23 6 4.0179 -1.4597 0.0805 24 6 3.4310 -0.7090 1.2788 25 8 2.0069 -0.6741 1.1663 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8897 28 1 -0.3633 0.5135 -0.8902 29 1 1.7146 -0.1842 -2.1399 30 1 1.6444 -1.7374 -1.2710 31 1 4.0144 -2.5211 -2.2011 32 1 6.1407 -2.9663 -1.7689 33 1 6.6298 -1.4662 -0.9137 34 1 8.4118 -2.6844 -2.5293 35 1 8.2525 -0.9014 -2.6009 36 1 10.8467 -2.6112 -4.9965 37 1 5.6285 -0.6227 -4.8199 38 1 5.1035 -2.3017 -4.5097 39 1 3.6617 -2.4898 0.0861 40 1 5.1061 -1.4492 0.1417 41 1 3.8193 0.3093 1.2955 42 1 3.7105 -1.2198 2.2003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378788546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:28 Heat of formation + Delta-G solvation = -90.244523 kcal Electronic energy + Delta-G solvation = -19382.110910 eV Core-core repulsion = 16552.864648 eV Total energy + Delta-G solvation = -2829.246262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.73056 -39.19992 -36.32631 -34.32221 -33.66083 -31.76856 -29.90486 -28.71666 -27.56053 -25.46973 -24.42177 -22.70920 -21.82901 -21.00390 -20.46392 -18.52854 -17.29459 -17.14877 -16.76152 -16.43208 -15.99212 -15.52944 -15.24623 -14.88325 -14.56440 -14.13337 -13.86790 -13.55478 -13.45330 -13.10275 -13.08818 -12.86842 -12.76307 -12.62453 -12.36688 -12.14405 -12.09153 -11.98816 -11.58696 -11.52916 -11.41604 -11.20477 -10.97578 -10.77947 -10.46528 -10.43101 -9.21074 -8.12643 -6.20481 1.40378 1.40727 1.50491 2.43395 2.86444 3.13832 3.20973 3.77758 3.86577 4.01281 4.01514 4.11560 4.19213 4.26230 4.31108 4.42098 4.51107 4.58361 4.72528 4.79944 4.83957 4.88440 4.91234 4.92638 5.00303 5.04201 5.10410 5.17177 5.21658 5.26961 5.29705 5.36442 5.40476 5.50028 5.67627 5.92589 5.98344 6.21378 6.33062 6.42563 6.52875 6.91759 7.46155 8.96862 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.045342 B = 0.004104 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.387241 B = 6821.768754 C = 7037.145305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.061 0.939 4 C -0.129 4.129 5 C 0.086 3.914 6 H 0.071 0.929 7 N -0.677 5.677 8 C 0.102 3.898 9 H 0.073 0.927 10 C -0.139 4.139 11 C -0.087 4.087 12 C 0.034 3.966 13 H -0.006 1.006 14 C -0.530 4.530 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.922 5.922 18 Si 0.950 3.050 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.268 1.268 22 C -0.094 4.094 23 C -0.184 4.184 24 C 0.065 3.935 25 O -0.398 6.398 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.343 0.657 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.033 0.967 36 H 0.259 0.741 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.527 4.361 11.705 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.079 0.921 4 C -0.168 4.168 5 C -0.024 4.024 6 H 0.089 0.911 7 N -0.305 5.305 8 C -0.008 4.008 9 H 0.091 0.909 10 C -0.178 4.178 11 C -0.126 4.126 12 C 0.015 3.985 13 H 0.012 0.988 14 C -0.568 4.568 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.561 5.561 18 Si 0.776 3.224 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.193 1.193 22 C -0.133 4.133 23 C -0.223 4.223 24 C -0.012 4.012 25 O -0.317 6.317 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.162 0.838 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.803 4.605 11.347 19.992 hybrid contribution 1.912 -0.102 -0.237 1.929 sum -13.892 4.503 11.109 18.349 Atomic orbital electron populations 1.21761 0.91860 1.02973 1.03202 1.22238 0.96038 0.94952 0.84308 0.92132 1.22161 0.94246 1.01883 0.98473 1.21683 0.95504 0.97349 0.87866 0.91079 1.60635 1.21623 1.10032 1.38241 1.22262 0.85999 0.98185 0.94334 0.90920 1.23225 0.96671 0.99796 0.98099 1.22049 0.95655 0.98465 0.96444 1.19264 0.91671 0.94532 0.93019 0.98800 1.21675 0.95059 1.11987 1.28126 0.92969 1.25771 0.99423 0.96617 0.96954 1.70101 1.12941 1.25414 1.47680 0.85688 0.78356 0.79292 0.79066 1.19921 1.21100 1.19281 1.22092 0.95926 0.99610 0.95627 1.23026 1.01856 1.00831 0.96562 1.22572 0.80369 0.99906 0.98341 1.87890 1.21689 1.78360 1.43806 0.92172 0.91610 0.89643 0.90256 0.91528 0.83765 0.91783 0.91299 0.95477 0.94825 0.93175 0.93625 0.93022 0.91228 0.90574 0.92664 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.57 71.99 0.69 -1.42 16 2 C 0.08 1.54 3.26 30.63 0.10 1.64 16 3 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.13 -2.64 5.03 30.69 0.15 -2.49 16 5 C 0.09 1.99 2.55 45.04 0.12 2.11 16 6 H 0.07 1.73 7.47 -2.39 -0.02 1.71 16 7 N -0.68 -18.74 6.07 -463.37 -2.81 -21.55 16 8 C 0.10 3.45 3.16 45.99 0.15 3.60 16 9 H 0.07 2.50 7.51 -2.39 -0.02 2.48 16 10 C -0.14 -4.81 5.39 31.89 0.17 -4.64 16 11 C -0.09 -4.06 5.73 31.67 0.18 -3.88 16 12 C 0.03 1.73 2.73 -10.82 -0.03 1.70 16 13 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 14 C -0.53 -29.77 8.33 25.60 0.21 -29.55 16 15 H 0.05 2.88 7.34 -2.91 -0.02 2.86 16 16 C 0.01 0.61 5.29 84.65 0.45 1.06 16 17 N -0.92 -54.75 12.89 21.45 0.28 -54.48 16 18 Si 0.95 44.23 29.54 68.60 2.03 46.25 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 C -0.09 -3.92 6.18 31.32 0.19 -3.73 16 23 C -0.18 -3.86 5.14 30.68 0.16 -3.70 16 24 C 0.07 1.24 6.84 72.01 0.49 1.73 16 25 O -0.40 -8.66 10.41 -148.98 -1.55 -10.21 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.34 9.17 8.01 -89.69 -0.72 8.45 16 32 H 0.06 2.11 7.82 -2.39 -0.02 2.09 16 33 H 0.07 2.10 6.59 -2.39 -0.02 2.09 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.03 1.64 7.85 -2.39 -0.02 1.62 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.04 1.96 7.37 -2.39 -0.02 1.95 16 38 H 0.05 2.06 8.04 -2.38 -0.02 2.04 16 39 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 40 H 0.08 1.67 5.69 -2.39 -0.01 1.65 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -61.42 320.91 1.23 -60.19 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.26 Total: 17.37 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.03 Total: -37.58 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -2.53 Total: -76.03 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -1.55 Total: -10.21 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -61.42 1.23 -60.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378788546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.053 kcal (2) G-P(sol) polarization free energy of solvation -61.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds