Wall clock time and date at job start Mon Mar 30 2020 07:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.48815 * 2 1 4 4 C 1.53086 * 109.47962 * 239.97471 * 2 1 3 5 5 C 1.53187 * 109.16191 * 182.40599 * 4 2 1 6 6 H 1.08999 * 109.54313 * 297.02387 * 5 4 2 7 7 N 1.46902 * 109.54067 * 176.84525 * 5 4 2 8 8 C 1.46906 * 110.99573 * 155.00014 * 7 5 4 9 9 H 1.09000 * 110.43422 * 36.08592 * 8 7 5 10 10 C 1.54887 * 110.48671 * 273.54627 * 8 7 5 11 11 C 1.54887 * 102.75061 * 203.38048 * 10 8 7 12 12 C 1.54266 * 104.19492 * 37.94126 * 11 10 8 13 13 H 1.09007 * 110.03086 * 95.67243 * 12 11 10 14 14 C 1.50693 * 110.03371 * 217.05672 * 12 11 10 15 15 H 1.08007 * 119.99778 * 118.54465 * 14 12 11 16 16 C 1.37875 * 120.00172 * 298.54694 * 14 12 11 17 17 N 1.31517 * 120.00153 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99977 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47265 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47143 * 120.00236 * 18 16 14 21 21 H 1.48496 * 109.47170 * 239.99884 * 18 16 14 22 22 C 1.53875 * 106.59932 * 336.39453 * 12 11 10 23 23 C 1.53172 * 109.03664 * 56.98050 * 5 4 2 24 24 C 1.53094 * 109.16299 * 303.01992 * 23 5 4 25 25 O 1.42897 * 109.48234 * 120.02890 * 2 1 3 26 26 H 1.09000 * 109.46572 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46758 * 300.02189 * 1 2 3 28 28 H 1.08992 * 109.47081 * 60.03006 * 1 2 3 29 29 H 1.08998 * 109.52283 * 62.50000 * 4 2 1 30 30 H 1.08999 * 109.52142 * 302.30920 * 4 2 1 31 31 H 1.00896 * 111.00219 * 278.95653 * 7 5 4 32 32 H 1.09003 * 110.76080 * 321.69624 * 10 8 7 33 33 H 1.08998 * 110.76049 * 85.06317 * 10 8 7 34 34 H 1.08999 * 110.48761 * 156.61937 * 11 10 8 35 35 H 1.09002 * 110.48814 * 279.26767 * 11 10 8 36 36 H 0.96997 * 119.99888 * 179.97438 * 17 16 14 37 37 H 1.09005 * 110.03014 * 240.71421 * 22 12 11 38 38 H 1.08996 * 110.03924 * 119.28333 * 22 12 11 39 39 H 1.09000 * 109.52470 * 62.92006 * 23 5 4 40 40 H 1.08995 * 109.52508 * 183.11291 * 23 5 4 41 41 H 1.09000 * 109.48182 * 297.62793 * 24 23 5 42 42 H 1.09002 * 109.48340 * 177.59014 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7707 -1.2122 6 1 3.9690 0.2436 -1.2424 7 7 4.0672 -1.5279 -2.3692 8 6 5.4370 -1.1245 -2.7143 9 1 6.0061 -0.8994 -1.8123 10 6 5.4188 0.0995 -3.6632 11 6 6.7900 -0.0006 -4.3766 12 6 6.9948 -1.5144 -4.5917 13 1 6.6678 -1.7969 -5.5925 14 6 8.4469 -1.8707 -4.4037 15 1 8.7375 -2.5587 -3.6235 16 6 9.4046 -1.3184 -5.2276 17 7 9.0508 -0.4810 -6.1780 18 14 11.2046 -1.7596 -4.9940 19 1 11.3376 -2.7154 -3.8654 20 1 11.7262 -2.3850 -6.2358 21 1 11.9811 -0.5294 -4.6956 22 6 6.1345 -2.2290 -3.5349 23 6 4.0178 -1.4599 0.0808 24 6 3.4308 -0.7093 1.2790 25 8 2.0066 -0.6742 1.1663 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8898 28 1 -0.3633 0.5133 -0.8902 29 1 1.7148 -0.1842 -2.1398 30 1 1.6444 -1.7374 -1.2709 31 1 4.0143 -2.5213 -2.2010 32 1 4.6029 0.0195 -4.3816 33 1 5.3455 1.0273 -3.0958 34 1 6.7611 0.5203 -5.3337 35 1 7.5796 0.4051 -3.7441 36 1 9.7246 -0.0922 -6.7573 37 1 6.7672 -2.8336 -2.8850 38 1 5.3901 -2.8583 -4.0226 39 1 3.6614 -2.4900 0.0863 40 1 5.1060 -1.4496 0.1420 41 1 3.8193 0.3090 1.2958 42 1 3.7101 -1.2202 2.2004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378788550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:36 Heat of formation + Delta-G solvation = -74.122607 kcal Electronic energy + Delta-G solvation = -19342.405379 eV Core-core repulsion = 16513.858215 eV Total energy + Delta-G solvation = -2828.547164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -39.72583 -37.64043 -35.00637 -32.91166 -32.39512 -30.43391 -28.09156 -27.80537 -25.95678 -23.76346 -23.35264 -21.88579 -20.42269 -19.32580 -18.86537 -16.48475 -16.42390 -16.05979 -15.42190 -14.92028 -14.52078 -14.39597 -14.03443 -13.67273 -13.43512 -12.69078 -12.62787 -12.44812 -12.32438 -12.01502 -11.73816 -11.27641 -11.24321 -11.06067 -11.03180 -10.71776 -10.58370 -10.34471 -10.18870 -10.05373 -9.89381 -9.61570 -9.50308 -9.16469 -8.67000 -8.33812 -8.03833 -5.97691 -4.00278 3.30123 3.38340 3.41775 3.65322 4.30191 4.46025 4.71359 4.79492 4.85269 5.03972 5.12608 5.25057 5.31643 5.35191 5.43454 5.52184 5.59937 5.63280 5.71355 5.77510 5.82922 5.88728 6.00770 6.04764 6.14624 6.20066 6.43350 6.56439 6.67437 6.73928 6.88492 7.06922 7.13885 7.25329 7.39803 7.56290 7.68900 7.82340 7.92911 8.07453 8.50120 9.03085 9.63272 11.11680 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.044656 B = 0.004132 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.858257 B = 6775.531731 C = 7069.250643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 H 0.056 0.944 4 C -0.135 4.135 5 C 0.086 3.914 6 H 0.076 0.924 7 N -0.677 5.677 8 C 0.083 3.917 9 H 0.040 0.960 10 C -0.115 4.115 11 C -0.091 4.091 12 C 0.047 3.953 13 H 0.027 0.973 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.114 4.114 23 C -0.186 4.186 24 C 0.067 3.933 25 O -0.384 6.384 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.336 0.664 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.258 0.742 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.591 1.154 11.850 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 H 0.074 0.926 4 C -0.173 4.173 5 C -0.024 4.024 6 H 0.094 0.906 7 N -0.307 5.307 8 C -0.026 4.026 9 H 0.058 0.942 10 C -0.154 4.154 11 C -0.130 4.130 12 C 0.028 3.972 13 H 0.045 0.955 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.715 3.285 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.152 4.152 23 C -0.226 4.226 24 C -0.010 4.010 25 O -0.303 6.303 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.918 1.586 11.351 18.030 hybrid contribution 1.900 -0.498 0.599 2.053 sum -12.019 1.088 11.951 16.984 Atomic orbital electron populations 1.21749 0.93168 1.02854 1.02250 1.22134 0.94957 0.95064 0.85193 0.92610 1.22211 0.95388 1.01873 0.97861 1.21608 0.94716 0.98060 0.88032 0.90574 1.60747 1.24048 1.09084 1.36779 1.22472 0.86038 0.97297 0.96804 0.94201 1.22623 0.99945 0.95020 0.97780 1.22239 0.92311 0.99703 0.98705 1.19179 0.93692 0.90999 0.93317 0.95510 1.21345 0.91530 1.26396 1.15829 0.92810 1.24990 0.98685 0.95189 0.95220 1.69988 1.33223 1.30384 1.19139 0.86618 0.85706 0.78199 0.77961 1.19893 1.21088 1.21116 1.22428 0.97729 0.96596 0.98462 1.22966 1.01636 1.01009 0.96947 1.22473 0.80922 0.99479 0.98150 1.87895 1.21009 1.78110 1.43287 0.91868 0.92096 0.91024 0.90319 0.91180 0.84586 0.91955 0.94250 0.92493 0.93216 0.93212 0.93050 0.93303 0.91008 0.90835 0.93291 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.57 37.16 0.36 -0.90 16 2 C 0.08 0.90 3.26 -26.68 -0.09 0.81 16 3 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.14 -1.55 5.03 -26.59 -0.13 -1.69 16 5 C 0.09 1.12 2.41 -67.53 -0.16 0.96 16 6 H 0.08 1.06 7.75 -51.93 -0.40 0.66 16 7 N -0.68 -10.18 6.05 -97.81 -0.59 -10.77 16 8 C 0.08 1.49 2.96 -66.05 -0.20 1.29 16 9 H 0.04 0.73 7.27 -51.93 -0.38 0.35 16 10 C -0.12 -2.23 6.40 -24.74 -0.16 -2.39 16 11 C -0.09 -2.15 5.36 -25.07 -0.13 -2.28 16 12 C 0.05 1.18 2.84 -90.66 -0.26 0.92 16 13 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.51 -14.12 8.38 -34.44 -0.29 -14.41 16 15 H 0.05 1.47 7.33 -52.48 -0.38 1.08 16 16 C 0.06 1.69 5.32 -17.82 -0.09 1.60 16 17 N -0.89 -25.72 12.33 55.43 0.68 -25.03 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.11 -2.35 5.93 -25.61 -0.15 -2.51 16 23 C -0.19 -2.18 5.38 -26.59 -0.14 -2.33 16 24 C 0.07 0.72 6.84 37.21 0.25 0.98 16 25 O -0.38 -4.63 10.41 -35.23 -0.37 -5.00 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.34 4.80 8.13 -39.29 -0.32 4.48 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.44 7.93 -51.93 -0.41 1.02 16 35 H 0.05 1.24 7.85 -51.93 -0.41 0.84 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.05 1.07 7.37 -51.93 -0.38 0.68 16 38 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 39 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.07 0.90 7.54 -51.93 -0.39 0.51 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -28.56 324.45 -9.30 -37.86 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.70 Total: 1.65 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -1.20 Total: -19.95 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.09 Total: -35.81 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.37 Total: -5.00 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.56 -9.30 -37.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378788550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.264 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds