Wall clock time and date at job start Mon Mar 30 2020 07:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.48815 * 2 1 4 4 C 1.53086 * 109.47962 * 239.97471 * 2 1 3 5 5 C 1.53187 * 109.16191 * 182.40599 * 4 2 1 6 6 H 1.08999 * 109.54313 * 297.02387 * 5 4 2 7 7 N 1.46902 * 109.54067 * 176.84525 * 5 4 2 8 8 C 1.46906 * 110.99573 * 155.00014 * 7 5 4 9 9 H 1.09000 * 110.43422 * 36.08592 * 8 7 5 10 10 C 1.54887 * 110.48671 * 273.54627 * 8 7 5 11 11 C 1.54887 * 102.75061 * 203.38048 * 10 8 7 12 12 C 1.54266 * 104.19492 * 37.94126 * 11 10 8 13 13 H 1.09007 * 110.03086 * 95.67243 * 12 11 10 14 14 C 1.50693 * 110.03371 * 217.05672 * 12 11 10 15 15 H 1.08007 * 119.99778 * 118.54465 * 14 12 11 16 16 C 1.37875 * 120.00172 * 298.54694 * 14 12 11 17 17 N 1.31517 * 120.00153 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99977 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47265 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47143 * 120.00236 * 18 16 14 21 21 H 1.48496 * 109.47170 * 239.99884 * 18 16 14 22 22 C 1.53875 * 106.59932 * 336.39453 * 12 11 10 23 23 C 1.53172 * 109.03664 * 56.98050 * 5 4 2 24 24 C 1.53094 * 109.16299 * 303.01992 * 23 5 4 25 25 O 1.42897 * 109.48234 * 120.02890 * 2 1 3 26 26 H 1.09000 * 109.46572 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46758 * 300.02189 * 1 2 3 28 28 H 1.08992 * 109.47081 * 60.03006 * 1 2 3 29 29 H 1.08998 * 109.52283 * 62.50000 * 4 2 1 30 30 H 1.08999 * 109.52142 * 302.30920 * 4 2 1 31 31 H 1.00896 * 111.00219 * 278.95653 * 7 5 4 32 32 H 1.09003 * 110.76080 * 321.69624 * 10 8 7 33 33 H 1.08998 * 110.76049 * 85.06317 * 10 8 7 34 34 H 1.08999 * 110.48761 * 156.61937 * 11 10 8 35 35 H 1.09002 * 110.48814 * 279.26767 * 11 10 8 36 36 H 0.96997 * 119.99888 * 179.97438 * 17 16 14 37 37 H 1.09005 * 110.03014 * 240.71421 * 22 12 11 38 38 H 1.08996 * 110.03924 * 119.28333 * 22 12 11 39 39 H 1.09000 * 109.52470 * 62.92006 * 23 5 4 40 40 H 1.08995 * 109.52508 * 183.11291 * 23 5 4 41 41 H 1.09000 * 109.48182 * 297.62793 * 24 23 5 42 42 H 1.09002 * 109.48340 * 177.59014 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7707 -1.2122 6 1 3.9690 0.2436 -1.2424 7 7 4.0672 -1.5279 -2.3692 8 6 5.4370 -1.1245 -2.7143 9 1 6.0061 -0.8994 -1.8123 10 6 5.4188 0.0995 -3.6632 11 6 6.7900 -0.0006 -4.3766 12 6 6.9948 -1.5144 -4.5917 13 1 6.6678 -1.7969 -5.5925 14 6 8.4469 -1.8707 -4.4037 15 1 8.7375 -2.5587 -3.6235 16 6 9.4046 -1.3184 -5.2276 17 7 9.0508 -0.4810 -6.1780 18 14 11.2046 -1.7596 -4.9940 19 1 11.3376 -2.7154 -3.8654 20 1 11.7262 -2.3850 -6.2358 21 1 11.9811 -0.5294 -4.6956 22 6 6.1345 -2.2290 -3.5349 23 6 4.0178 -1.4599 0.0808 24 6 3.4308 -0.7093 1.2790 25 8 2.0066 -0.6742 1.1663 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8898 28 1 -0.3633 0.5133 -0.8902 29 1 1.7148 -0.1842 -2.1398 30 1 1.6444 -1.7374 -1.2709 31 1 4.0143 -2.5213 -2.2010 32 1 4.6029 0.0195 -4.3816 33 1 5.3455 1.0273 -3.0958 34 1 6.7611 0.5203 -5.3337 35 1 7.5796 0.4051 -3.7441 36 1 9.7246 -0.0922 -6.7573 37 1 6.7672 -2.8336 -2.8850 38 1 5.3901 -2.8583 -4.0226 39 1 3.6614 -2.4900 0.0863 40 1 5.1060 -1.4496 0.1420 41 1 3.8193 0.3090 1.2958 42 1 3.7101 -1.2202 2.2004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378788550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:35 Heat of formation + Delta-G solvation = -91.215683 kcal Electronic energy + Delta-G solvation = -19343.146590 eV Core-core repulsion = 16513.858215 eV Total energy + Delta-G solvation = -2829.288375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69395 -39.15769 -36.36938 -34.33365 -33.68463 -31.77238 -29.91631 -28.79889 -27.47859 -25.57240 -24.38197 -22.83206 -21.50471 -20.92889 -20.56808 -18.54270 -17.26859 -17.02321 -16.77111 -16.50753 -15.97969 -15.63180 -15.12586 -14.98563 -14.78332 -14.31355 -14.03679 -13.57554 -13.43788 -13.11986 -13.00772 -12.82819 -12.68576 -12.39972 -12.27985 -12.12960 -11.99274 -11.92367 -11.67614 -11.48737 -11.46913 -11.24032 -11.05848 -10.73633 -10.47531 -10.45768 -9.27919 -8.11560 -6.21457 1.38881 1.40670 1.51838 2.42888 2.84852 3.14489 3.19737 3.76427 3.87146 3.98550 4.01922 4.09081 4.17888 4.25879 4.33684 4.44641 4.48485 4.58050 4.75458 4.78475 4.81079 4.86559 4.89479 4.95356 5.01829 5.04588 5.08535 5.17787 5.20859 5.26675 5.30759 5.36077 5.44219 5.53659 5.66494 5.93079 5.97794 6.21136 6.31322 6.40001 6.53757 6.90906 7.45782 8.97365 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.044656 B = 0.004132 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.858257 B = 6775.531731 C = 7069.250643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.060 0.940 4 C -0.128 4.128 5 C 0.085 3.915 6 H 0.069 0.931 7 N -0.676 5.676 8 C 0.099 3.901 9 H 0.041 0.959 10 C -0.103 4.103 11 C -0.083 4.083 12 C 0.037 3.963 13 H -0.008 1.008 14 C -0.530 4.530 15 H 0.053 0.947 16 C 0.009 3.991 17 N -0.920 5.920 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.105 4.105 23 C -0.181 4.181 24 C 0.066 3.934 25 O -0.397 6.397 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.343 0.657 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.259 0.741 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 1.013 13.427 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.078 0.922 4 C -0.166 4.166 5 C -0.025 4.025 6 H 0.087 0.913 7 N -0.306 5.306 8 C -0.010 4.010 9 H 0.059 0.941 10 C -0.141 4.141 11 C -0.122 4.122 12 C 0.018 3.982 13 H 0.010 0.990 14 C -0.569 4.569 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.559 5.559 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.206 1.206 22 C -0.143 4.143 23 C -0.220 4.220 24 C -0.011 4.011 25 O -0.316 6.316 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.162 0.838 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.621 1.436 12.944 19.580 hybrid contribution 2.092 -0.460 0.079 2.144 sum -12.529 0.976 13.023 18.098 Atomic orbital electron populations 1.21757 0.91773 1.03023 1.03211 1.22244 0.96097 0.94929 0.84301 0.92219 1.22146 0.94075 1.01942 0.98467 1.21668 0.95665 0.97403 0.87759 0.91257 1.60663 1.21739 1.09826 1.38344 1.22148 0.87529 0.95362 0.95989 0.94127 1.22482 0.97009 0.96751 0.97859 1.22014 0.94402 0.98275 0.97460 1.19201 0.93559 0.92481 0.92954 0.98980 1.21705 0.93037 1.26318 1.15796 0.92913 1.25787 1.03042 0.95129 0.94967 1.70117 1.34554 1.31319 1.19915 0.85587 0.80423 0.78083 0.78066 1.19047 1.20729 1.20644 1.22253 0.97422 0.97109 0.97532 1.22889 1.01321 1.01041 0.96746 1.22554 0.80418 0.99860 0.98252 1.87892 1.21597 1.78345 1.43806 0.92087 0.91582 0.89666 0.90282 0.91379 0.83789 0.91781 0.92331 0.95138 0.95199 0.93181 0.93251 0.92366 0.90939 0.91315 0.92744 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.57 71.98 0.69 -1.44 16 2 C 0.08 1.56 3.26 30.63 0.10 1.66 16 3 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.13 -2.66 5.03 30.69 0.15 -2.51 16 5 C 0.09 2.02 2.41 45.03 0.11 2.13 16 6 H 0.07 1.77 7.75 -2.39 -0.02 1.75 16 7 N -0.68 -19.00 6.05 -463.36 -2.81 -21.81 16 8 C 0.10 3.44 2.96 45.99 0.14 3.58 16 9 H 0.04 1.42 7.27 -2.39 -0.02 1.41 16 10 C -0.10 -3.89 6.40 31.88 0.20 -3.69 16 11 C -0.08 -3.99 5.36 31.67 0.17 -3.82 16 12 C 0.04 1.89 2.84 -10.82 -0.03 1.86 16 13 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 14 C -0.53 -29.65 8.38 25.60 0.21 -29.43 16 15 H 0.05 2.89 7.33 -2.91 -0.02 2.87 16 16 C 0.01 0.52 5.32 84.65 0.45 0.97 16 17 N -0.92 -54.44 12.33 21.45 0.26 -54.18 16 18 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 C -0.11 -4.29 5.93 31.32 0.19 -4.11 16 23 C -0.18 -3.85 5.38 30.68 0.17 -3.69 16 24 C 0.07 1.27 6.84 72.01 0.49 1.77 16 25 O -0.40 -8.68 10.41 -148.98 -1.55 -10.23 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.34 9.06 8.13 -89.70 -0.73 8.33 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.03 1.58 7.93 -2.39 -0.02 1.56 16 35 H 0.03 1.52 7.85 -2.39 -0.02 1.50 16 36 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.05 2.02 7.37 -2.38 -0.02 2.00 16 38 H 0.06 2.24 7.99 -2.39 -0.02 2.22 16 39 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 40 H 0.07 1.54 7.54 -2.39 -0.02 1.52 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -61.26 324.45 1.21 -60.04 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.24 Total: 16.75 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 3.04 Total: -36.72 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -2.54 Total: -75.99 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.55 Total: -10.23 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -61.26 1.21 -60.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378788550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.172 kcal (2) G-P(sol) polarization free energy of solvation -61.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds