Wall clock time and date at job start Mon Mar 30 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47861 * 2 1 4 4 C 1.53089 * 109.47980 * 239.97304 * 2 1 3 5 5 C 1.53205 * 109.15048 * 297.61337 * 4 2 1 6 6 N 1.46904 * 109.61014 * 183.11432 * 5 4 2 7 7 C 1.46904 * 111.00053 * 271.22007 * 6 5 4 8 8 C 1.52995 * 109.46802 * 185.09424 * 7 6 5 9 9 C 1.50697 * 115.55213 * 65.18850 * 8 7 6 10 10 H 1.08003 * 119.99795 * 264.94977 * 9 8 7 11 11 C 1.37883 * 120.00006 * 84.94624 * 9 8 7 12 12 N 1.31518 * 119.99761 * 184.64607 * 11 9 8 13 13 Si 1.86797 * 120.00089 * 4.64236 * 11 9 8 14 14 H 1.48505 * 109.46658 * 94.49363 * 13 11 9 15 15 H 1.48496 * 109.47149 * 214.49312 * 13 11 9 16 16 H 1.48502 * 109.46998 * 334.49706 * 13 11 9 17 17 C 1.52997 * 117.49973 * 279.51167 * 8 7 6 18 18 C 1.53009 * 117.49646 * 210.85354 * 8 7 6 19 19 C 1.53178 * 109.04368 * 303.03016 * 5 4 2 20 20 C 1.53093 * 109.16114 * 56.97858 * 19 5 4 21 21 H 1.08997 * 109.48874 * 62.38286 * 20 19 5 22 22 C 1.53005 * 109.47606 * 182.40537 * 20 19 5 23 23 O 1.42894 * 109.41812 * 302.39074 * 20 19 5 24 24 H 1.09003 * 109.47074 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.47234 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46813 * 60.00322 * 1 2 3 27 27 H 1.09001 * 109.52283 * 57.53106 * 4 2 1 28 28 H 1.09000 * 109.52098 * 177.72427 * 4 2 1 29 29 H 1.09008 * 109.53716 * 62.90059 * 5 4 2 30 30 H 1.00895 * 111.00015 * 35.18171 * 6 5 4 31 31 H 1.08996 * 109.47242 * 305.10103 * 7 6 5 32 32 H 1.09001 * 109.46620 * 65.09277 * 7 6 5 33 33 H 0.97001 * 119.99438 * 180.02562 * 12 11 9 34 34 H 1.08997 * 117.50127 * 0.02562 * 17 8 7 35 35 H 1.09007 * 117.49852 * 145.02267 * 17 8 7 36 36 H 1.08998 * 117.49722 * 214.97876 * 18 8 7 37 37 H 1.09000 * 117.49903 * 0.02562 * 18 8 7 38 38 H 1.09002 * 109.51994 * 297.07193 * 19 5 4 39 39 H 1.08997 * 109.51752 * 176.88945 * 19 5 4 40 40 H 1.08996 * 109.46714 * 179.97438 * 22 20 19 41 41 H 1.09001 * 109.47287 * 299.94779 * 22 20 19 42 42 H 1.09000 * 109.46736 * 59.94357 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 1.5757 -2.1816 -1.2117 6 7 2.1223 -2.9033 -2.3687 7 6 1.2219 -2.8030 -3.5251 8 6 1.7596 -3.6683 -4.6665 9 6 1.7805 -5.1520 -4.4032 10 1 2.6801 -5.6224 -4.0346 11 6 0.6511 -5.9089 -4.6328 12 7 0.6399 -7.1856 -4.3174 13 14 -0.8630 -5.1209 -5.3918 14 1 -0.8438 -5.3273 -6.8623 15 1 -2.0841 -5.7435 -4.8204 16 1 -0.8645 -3.6657 -5.0961 17 6 2.8858 -3.0870 -5.5236 18 6 1.4719 -3.2088 -6.0973 19 6 2.0764 -2.8322 0.0814 20 6 1.5644 -2.0282 1.2794 21 1 0.4749 -2.0547 1.2963 22 6 2.1098 -2.6369 2.5729 23 8 2.0065 -0.6740 1.1666 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 1.6421 -0.2357 -2.1399 28 1 3.1298 -0.6874 -1.2709 29 1 0.4866 -2.2181 -1.2405 30 1 3.0461 -2.5695 -2.5996 31 1 0.2280 -3.1503 -3.2429 32 1 1.1647 -1.7648 -3.8520 33 1 -0.1546 -7.7182 -4.4793 34 1 3.2440 -2.0883 -5.2740 35 1 3.6418 -3.7778 -5.8972 36 1 1.2982 -3.9796 -6.8481 37 1 0.8999 -2.2898 -6.2253 38 1 3.1664 -2.8400 0.0869 39 1 1.7037 -3.8546 0.1427 40 1 1.7455 -2.0641 3.4257 41 1 1.7725 -3.6699 2.6588 42 1 3.1993 -2.6107 2.5556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381463754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:18 Heat of formation + Delta-G solvation = -29.691438 kcal Electronic energy + Delta-G solvation = -19799.332958 eV Core-core repulsion = 16972.712474 eV Total energy + Delta-G solvation = -2826.620484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93535 -37.36097 -35.11581 -33.30225 -31.97579 -31.29928 -28.81734 -26.60893 -25.90666 -24.22503 -22.60455 -21.79115 -21.22997 -19.43520 -18.77621 -16.59718 -16.22402 -15.98053 -15.12064 -14.78858 -14.53309 -14.12484 -14.07609 -13.44292 -13.23174 -12.90176 -12.70196 -12.55583 -12.43239 -12.03550 -11.90613 -11.65947 -11.60600 -11.06353 -11.03052 -10.97273 -10.81341 -10.58572 -10.45405 -10.13231 -9.87560 -9.51709 -9.33850 -9.02141 -8.51394 -8.35998 -7.63859 -5.99109 -3.97728 3.32714 3.42310 3.46613 3.77205 4.45920 4.50492 4.74266 4.88717 4.98091 5.03334 5.11839 5.22176 5.28649 5.34725 5.39692 5.42915 5.54474 5.61141 5.76038 5.80129 5.88265 5.94490 5.97311 6.05660 6.06814 6.11953 6.17556 6.20660 6.26614 6.38767 6.45555 6.49866 6.55312 6.74252 7.09237 7.21716 7.32275 7.76919 7.83625 8.06793 8.64537 9.06901 9.64639 11.13588 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.006013 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.716861 B = 4655.538751 C = 4973.731920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.093 3.907 3 H 0.096 0.904 4 C -0.179 4.179 5 C 0.086 3.914 6 N -0.658 5.658 7 C 0.103 3.897 8 C 0.010 3.990 9 C -0.461 4.461 10 H 0.078 0.922 11 C 0.073 3.927 12 N -0.902 5.902 13 Si 0.876 3.124 14 H -0.283 1.283 15 H -0.296 1.296 16 H -0.259 1.259 17 C -0.184 4.184 18 C -0.203 4.203 19 C -0.135 4.135 20 C 0.082 3.918 21 H 0.058 0.942 22 C -0.142 4.142 23 O -0.378 6.378 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.335 0.665 31 H 0.065 0.935 32 H 0.000 1.000 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 13.675 8.807 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.035 3.965 3 H 0.114 0.886 4 C -0.219 4.219 5 C -0.024 4.024 6 N -0.287 5.287 7 C -0.026 4.026 8 C 0.009 3.991 9 C -0.499 4.499 10 H 0.096 0.904 11 C -0.128 4.128 12 N -0.541 5.541 13 Si 0.705 3.295 14 H -0.209 1.209 15 H -0.223 1.223 16 H -0.184 1.184 17 C -0.222 4.222 18 C -0.241 4.241 19 C -0.173 4.173 20 C 0.024 3.976 21 H 0.076 0.924 22 C -0.200 4.200 23 O -0.297 6.297 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.018 0.982 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.117 12.952 9.134 15.849 hybrid contribution -0.968 1.166 -1.115 1.882 sum -0.851 14.118 8.019 16.259 Atomic orbital electron populations 1.22475 0.96642 1.03005 1.02369 1.22037 0.93266 0.95971 0.85219 0.88598 1.22989 1.01960 0.98599 0.98303 1.21650 0.99168 0.89449 0.92174 1.60257 1.05081 1.58195 1.05125 1.21706 0.96111 0.94303 0.90457 1.19441 0.97122 0.96082 0.86486 1.20157 0.99478 0.87366 1.42855 0.90438 1.24938 0.98066 0.94583 0.95186 1.69911 1.29314 1.06669 1.48157 0.86903 0.82755 0.80456 0.79411 1.20896 1.22329 1.18350 1.22804 0.91843 0.99950 1.07582 1.22989 0.99224 1.01425 1.00433 1.22207 1.01967 1.00199 0.92919 1.22153 0.97981 0.81946 0.95531 0.92390 1.21745 1.02021 1.00407 0.95782 1.87930 1.73901 1.24953 1.42962 0.92024 0.91610 0.91678 0.91365 0.91018 0.90841 0.84696 0.91706 0.98153 0.92888 0.91508 0.89619 0.89568 0.91317 0.91156 0.89975 0.92308 0.90971 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 8.65 37.16 0.32 -1.71 16 2 C 0.09 1.10 3.91 -26.68 -0.10 1.00 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.18 -2.32 4.94 -26.58 -0.13 -2.45 16 5 C 0.09 1.32 2.26 -67.51 -0.15 1.17 16 6 N -0.66 -12.20 6.15 -106.51 -0.66 -12.85 16 7 C 0.10 2.11 4.99 -3.82 -0.02 2.09 16 8 C 0.01 0.23 0.97 -155.66 -0.15 0.08 16 9 C -0.46 -12.81 9.33 -34.44 -0.32 -13.13 16 10 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 11 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 13 Si 0.88 21.77 24.94 -169.99 -4.24 17.53 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 16 H -0.26 -6.05 5.70 56.52 0.32 -5.72 16 17 C -0.18 -3.72 9.96 -26.69 -0.27 -3.98 16 18 C -0.20 -4.31 7.31 -26.69 -0.20 -4.51 16 19 C -0.13 -1.95 5.03 -26.59 -0.13 -2.08 16 20 C 0.08 1.03 2.94 -26.68 -0.08 0.95 16 21 H 0.06 0.71 6.34 -51.93 -0.33 0.38 16 22 C -0.14 -1.54 9.56 37.16 0.36 -1.19 16 23 O -0.38 -5.04 10.24 -35.23 -0.36 -5.40 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.77 4.97 -51.93 -0.26 0.51 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 28 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.07 1.18 6.14 -51.92 -0.32 0.86 16 30 H 0.33 5.87 8.44 -39.29 -0.33 5.54 16 31 H 0.06 1.43 6.86 -51.93 -0.36 1.08 16 32 H 0.00 0.01 7.88 -51.93 -0.41 -0.40 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 36 H 0.09 1.93 7.12 -51.93 -0.37 1.56 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -29.89 320.23 -8.12 -38.01 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.49 Total: 6.56 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -0.97 Total: -21.76 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.12 Total: -39.76 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.36 Total: -5.40 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.24 Total: 17.53 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.89 -8.12 -38.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381463754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.318 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds