Wall clock time and date at job start Mon Mar 30 2020 07:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47861 * 2 1 4 4 C 1.53089 * 109.47980 * 239.97304 * 2 1 3 5 5 C 1.53205 * 109.15048 * 297.61337 * 4 2 1 6 6 N 1.46904 * 109.61014 * 183.11432 * 5 4 2 7 7 C 1.46904 * 111.00053 * 271.22007 * 6 5 4 8 8 C 1.52995 * 109.46802 * 185.09424 * 7 6 5 9 9 C 1.50697 * 115.55213 * 65.18850 * 8 7 6 10 10 H 1.08003 * 119.99795 * 264.94977 * 9 8 7 11 11 C 1.37883 * 120.00006 * 84.94624 * 9 8 7 12 12 N 1.31518 * 119.99761 * 184.64607 * 11 9 8 13 13 Si 1.86797 * 120.00089 * 4.64236 * 11 9 8 14 14 H 1.48505 * 109.46658 * 94.49363 * 13 11 9 15 15 H 1.48496 * 109.47149 * 214.49312 * 13 11 9 16 16 H 1.48502 * 109.46998 * 334.49706 * 13 11 9 17 17 C 1.52997 * 117.49973 * 279.51167 * 8 7 6 18 18 C 1.53009 * 117.49646 * 210.85354 * 8 7 6 19 19 C 1.53178 * 109.04368 * 303.03016 * 5 4 2 20 20 C 1.53093 * 109.16114 * 56.97858 * 19 5 4 21 21 H 1.08997 * 109.48874 * 62.38286 * 20 19 5 22 22 C 1.53005 * 109.47606 * 182.40537 * 20 19 5 23 23 O 1.42894 * 109.41812 * 302.39074 * 20 19 5 24 24 H 1.09003 * 109.47074 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.47234 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46813 * 60.00322 * 1 2 3 27 27 H 1.09001 * 109.52283 * 57.53106 * 4 2 1 28 28 H 1.09000 * 109.52098 * 177.72427 * 4 2 1 29 29 H 1.09008 * 109.53716 * 62.90059 * 5 4 2 30 30 H 1.00895 * 111.00015 * 35.18171 * 6 5 4 31 31 H 1.08996 * 109.47242 * 305.10103 * 7 6 5 32 32 H 1.09001 * 109.46620 * 65.09277 * 7 6 5 33 33 H 0.97001 * 119.99438 * 180.02562 * 12 11 9 34 34 H 1.08997 * 117.50127 * 0.02562 * 17 8 7 35 35 H 1.09007 * 117.49852 * 145.02267 * 17 8 7 36 36 H 1.08998 * 117.49722 * 214.97876 * 18 8 7 37 37 H 1.09000 * 117.49903 * 0.02562 * 18 8 7 38 38 H 1.09002 * 109.51994 * 297.07193 * 19 5 4 39 39 H 1.08997 * 109.51752 * 176.88945 * 19 5 4 40 40 H 1.08996 * 109.46714 * 179.97438 * 22 20 19 41 41 H 1.09001 * 109.47287 * 299.94779 * 22 20 19 42 42 H 1.09000 * 109.46736 * 59.94357 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 1.5757 -2.1816 -1.2117 6 7 2.1223 -2.9033 -2.3687 7 6 1.2219 -2.8030 -3.5251 8 6 1.7596 -3.6683 -4.6665 9 6 1.7805 -5.1520 -4.4032 10 1 2.6801 -5.6224 -4.0346 11 6 0.6511 -5.9089 -4.6328 12 7 0.6399 -7.1856 -4.3174 13 14 -0.8630 -5.1209 -5.3918 14 1 -0.8438 -5.3273 -6.8623 15 1 -2.0841 -5.7435 -4.8204 16 1 -0.8645 -3.6657 -5.0961 17 6 2.8858 -3.0870 -5.5236 18 6 1.4719 -3.2088 -6.0973 19 6 2.0764 -2.8322 0.0814 20 6 1.5644 -2.0282 1.2794 21 1 0.4749 -2.0547 1.2963 22 6 2.1098 -2.6369 2.5729 23 8 2.0065 -0.6740 1.1666 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 1.6421 -0.2357 -2.1399 28 1 3.1298 -0.6874 -1.2709 29 1 0.4866 -2.2181 -1.2405 30 1 3.0461 -2.5695 -2.5996 31 1 0.2280 -3.1503 -3.2429 32 1 1.1647 -1.7648 -3.8520 33 1 -0.1546 -7.7182 -4.4793 34 1 3.2440 -2.0883 -5.2740 35 1 3.6418 -3.7778 -5.8972 36 1 1.2982 -3.9796 -6.8481 37 1 0.8999 -2.2898 -6.2253 38 1 3.1664 -2.8400 0.0869 39 1 1.7037 -3.8546 0.1427 40 1 1.7455 -2.0641 3.4257 41 1 1.7725 -3.6699 2.6588 42 1 3.1993 -2.6107 2.5556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381463754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:17 Heat of formation + Delta-G solvation = -49.752138 kcal Electronic energy + Delta-G solvation = -19800.202855 eV Core-core repulsion = 16972.712474 eV Total energy + Delta-G solvation = -2827.490381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.99439 -38.99876 -36.46013 -34.25795 -34.14758 -32.50123 -29.89067 -27.88812 -27.57489 -25.84933 -23.66159 -23.31394 -22.48984 -20.87424 -20.27713 -18.32074 -17.46382 -17.07166 -16.79764 -16.25484 -15.71306 -15.49831 -15.30313 -14.87756 -14.75303 -14.50215 -14.21921 -13.73779 -13.47163 -13.29786 -13.00174 -12.97404 -12.80434 -12.63004 -12.52356 -12.16029 -12.12251 -12.02941 -11.91566 -11.79262 -11.40763 -11.02458 -10.90813 -10.52747 -10.42388 -10.18619 -9.03162 -8.20613 -6.23040 1.36118 1.38571 1.51395 2.41948 2.82347 3.03810 3.15243 3.47589 3.73226 3.88163 3.96407 4.13455 4.15952 4.25015 4.34768 4.36617 4.41696 4.42551 4.49115 4.55788 4.59738 4.63568 4.81893 4.85410 4.86215 4.90282 5.02479 5.03700 5.09515 5.10490 5.20404 5.23291 5.30409 5.39636 5.45158 5.55218 5.78473 6.32264 6.35249 6.44057 6.69083 6.83538 7.42854 8.96131 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.006013 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.716861 B = 4655.538751 C = 4973.731920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.090 3.910 3 H 0.116 0.884 4 C -0.169 4.169 5 C 0.086 3.914 6 N -0.680 5.680 7 C 0.115 3.885 8 C -0.020 4.020 9 C -0.456 4.456 10 H 0.026 0.974 11 C 0.012 3.988 12 N -0.956 5.956 13 Si 0.939 3.061 14 H -0.277 1.277 15 H -0.302 1.302 16 H -0.229 1.229 17 C -0.165 4.165 18 C -0.197 4.197 19 C -0.131 4.131 20 C 0.085 3.915 21 H 0.062 0.938 22 C -0.141 4.141 23 O -0.387 6.387 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.340 0.660 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 17.032 8.655 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.032 3.968 3 H 0.134 0.866 4 C -0.208 4.208 5 C -0.024 4.024 6 N -0.310 5.310 7 C -0.014 4.014 8 C -0.021 4.021 9 C -0.494 4.494 10 H 0.044 0.956 11 C -0.183 4.183 12 N -0.598 5.598 13 Si 0.764 3.236 14 H -0.203 1.203 15 H -0.230 1.230 16 H -0.152 1.152 17 C -0.202 4.202 18 C -0.235 4.235 19 C -0.170 4.170 20 C 0.028 3.972 21 H 0.080 0.920 22 C -0.198 4.198 23 O -0.307 6.307 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.158 0.842 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.547 16.344 8.983 18.658 hybrid contribution -0.626 0.070 -1.032 1.208 sum -1.173 16.414 7.952 18.276 Atomic orbital electron populations 1.22448 0.95836 1.02488 1.03429 1.22205 0.93961 0.96528 0.84064 0.86602 1.22876 1.01906 0.96648 0.99411 1.21663 0.98660 0.91020 0.91010 1.60179 1.05328 1.59945 1.05541 1.21437 0.95059 0.94998 0.89952 1.19370 1.00618 0.93553 0.88547 1.20312 0.97374 0.90466 1.41254 0.95568 1.25795 1.01608 0.94913 0.95998 1.70079 1.30384 1.08630 1.50680 0.85895 0.78184 0.81087 0.78444 1.20255 1.22970 1.15178 1.22828 0.91054 1.01159 1.05170 1.23032 1.00247 1.02067 0.98133 1.22164 1.01441 0.99516 0.93870 1.22138 0.98192 0.81677 0.95238 0.91983 1.21752 1.01855 1.00865 0.95322 1.87929 1.74229 1.24917 1.43614 0.91062 0.92874 0.90575 0.90500 0.91069 0.91527 0.84153 0.93773 0.95207 0.93051 0.87915 0.90799 0.91069 0.88209 0.91826 0.92026 0.91076 0.90408 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 8.65 71.98 0.62 -2.86 16 2 C 0.09 1.88 3.91 30.63 0.12 2.00 16 3 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.17 -3.94 4.94 30.69 0.15 -3.79 16 5 C 0.09 2.55 2.26 45.04 0.10 2.65 16 6 N -0.68 -24.63 6.15 -490.89 -3.02 -27.65 16 7 C 0.11 4.44 4.99 86.30 0.43 4.87 16 8 C -0.02 -0.87 0.97 -52.93 -0.05 -0.93 16 9 C -0.46 -26.03 9.33 25.60 0.24 -25.79 16 10 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 11 C 0.01 0.73 5.47 84.66 0.46 1.19 16 12 N -0.96 -61.16 13.96 21.45 0.30 -60.86 16 13 Si 0.94 44.88 24.94 68.60 1.71 46.59 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 16 H -0.23 -9.75 5.70 99.48 0.57 -9.18 16 17 C -0.16 -6.21 9.96 30.62 0.30 -5.91 16 18 C -0.20 -7.75 7.31 30.62 0.22 -7.52 16 19 C -0.13 -3.78 5.03 30.69 0.15 -3.63 16 20 C 0.09 2.05 2.94 30.63 0.09 2.14 16 21 H 0.06 1.45 6.34 -2.39 -0.02 1.44 16 22 C -0.14 -2.88 9.56 71.98 0.69 -2.19 16 23 O -0.39 -9.48 10.24 -148.98 -1.52 -11.00 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.14 4.97 -2.39 -0.01 1.13 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.67 7.93 -2.39 -0.02 1.66 16 28 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 29 H 0.07 2.06 6.14 -2.38 -0.01 2.04 16 30 H 0.34 11.47 8.44 -89.70 -0.76 10.72 16 31 H 0.04 1.87 6.86 -2.39 -0.02 1.86 16 32 H 0.03 0.99 7.88 -2.39 -0.02 0.97 16 33 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 36 H 0.07 3.02 7.12 -2.39 -0.02 3.00 16 37 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -66.38 320.23 1.09 -65.29 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.08 Total: 27.37 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 3.54 Total: -39.75 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -2.72 Total: -88.50 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -1.52 Total: -11.00 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.71 Total: 46.59 kcal Total: -66.38 1.09 -65.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381463754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.542 kcal (2) G-P(sol) polarization free energy of solvation -66.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds