Wall clock time and date at job start Mon Mar 30 2020 07:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 110.33326 * 2 1 4 4 C 1.54478 * 110.37381 * 237.74767 * 2 1 3 5 5 C 1.54511 * 104.06101 * 217.18986 * 4 2 1 6 6 H 1.08999 * 110.51000 * 118.78540 * 5 4 2 7 7 N 1.46904 * 110.50777 * 241.35297 * 5 4 2 8 8 C 1.46897 * 111.00226 * 53.76904 * 7 5 4 9 9 C 1.46905 * 110.99918 * 289.81231 * 7 5 4 10 10 C 1.53003 * 109.46767 * 198.93765 * 9 7 5 11 11 C 1.50699 * 115.55279 * 56.49807 * 10 9 7 12 12 H 1.08002 * 119.99238 * 249.52766 * 11 10 9 13 13 C 1.37871 * 120.00281 * 69.52342 * 11 10 9 14 14 N 1.31514 * 120.00194 * 357.95453 * 13 11 10 15 15 Si 1.86804 * 120.00065 * 177.95593 * 13 11 10 16 16 H 1.48497 * 109.47032 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47070 * 239.99975 * 15 13 11 18 18 H 1.48497 * 109.47046 * 119.99855 * 15 13 11 19 19 C 1.53001 * 117.51469 * 202.19562 * 10 9 7 20 20 C 1.52992 * 60.00235 * 107.47868 * 19 10 9 21 21 C 1.54473 * 104.18627 * 0.06406 * 5 4 2 22 22 H 1.08997 * 110.37741 * 265.08041 * 21 5 4 23 23 C 1.53003 * 110.37141 * 142.74414 * 21 5 4 24 24 O 1.44421 * 110.37506 * 122.36252 * 2 1 3 25 25 H 1.08995 * 109.46871 * 182.25788 * 1 2 3 26 26 H 1.09006 * 109.47035 * 302.25432 * 1 2 3 27 27 H 1.08997 * 109.47236 * 62.25170 * 1 2 3 28 28 H 1.09003 * 110.51145 * 98.54288 * 4 2 1 29 29 H 1.08999 * 110.62369 * 335.89118 * 4 2 1 30 30 H 1.09008 * 109.46897 * 301.94521 * 8 7 5 31 31 H 1.08995 * 109.47245 * 61.94730 * 8 7 5 32 32 H 1.09002 * 109.47086 * 181.94800 * 8 7 5 33 33 H 1.08999 * 109.47273 * 78.93705 * 9 7 5 34 34 H 1.08999 * 109.46905 * 318.93472 * 9 7 5 35 35 H 0.97008 * 119.99823 * 5.54715 * 14 13 11 36 36 H 1.08996 * 117.49909 * 214.97386 * 19 10 9 37 37 H 1.09002 * 117.50158 * 359.97438 * 19 10 9 38 38 H 1.09004 * 117.50573 * 252.51019 * 20 19 10 39 39 H 1.09003 * 117.52146 * 107.47276 * 20 19 10 40 40 H 1.08994 * 109.47506 * 60.00100 * 23 21 5 41 41 H 1.09002 * 109.46981 * 180.02562 * 23 21 5 42 42 H 1.09003 * 109.46907 * 299.99767 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0222 0.0000 4 6 2.0678 -0.7728 -1.2247 5 6 3.3178 -1.5049 -0.6873 6 1 3.1966 -2.5844 -0.7779 7 7 4.5215 -1.0616 -1.4033 8 6 4.6499 0.4012 -1.3618 9 6 4.5202 -1.5509 -2.7885 10 6 5.9418 -1.4928 -3.3511 11 6 6.9833 -2.2469 -2.5651 12 1 7.7447 -1.7074 -2.0213 13 6 6.9640 -3.6252 -2.5400 14 7 6.0132 -4.2811 -3.1689 15 14 8.2883 -4.5612 -1.6127 16 1 9.2352 -3.5980 -0.9957 17 1 9.0234 -5.4425 -2.5551 18 1 7.6593 -5.3870 -0.5509 19 6 6.0988 -1.4502 -4.8724 20 6 6.3768 -0.1974 -4.0394 21 6 3.3891 -1.0910 0.7992 22 1 4.0553 -0.2375 0.9240 23 6 3.8611 -2.2665 1.6574 24 8 2.0328 -0.7247 1.1436 25 1 -0.3633 -1.0268 0.0405 26 1 -0.3633 0.5485 0.8691 27 1 -0.3633 0.4785 -0.9095 28 1 2.3429 -0.0819 -2.0216 29 1 1.3285 -1.4903 -1.5809 30 1 3.7614 0.8565 -1.7992 31 1 4.7536 0.7276 -0.3270 32 1 5.5302 0.7048 -1.9284 33 1 3.8640 -0.9258 -3.3940 34 1 4.1628 -2.5804 -2.8098 35 1 5.3728 -3.8003 -3.7163 36 1 6.9552 -1.9675 -5.3048 37 1 5.1891 -1.4639 -5.4729 38 1 5.6501 0.6134 -4.0915 39 1 7.4162 0.1097 -3.9231 40 1 4.8513 -2.5819 1.3286 41 1 3.9056 -1.9589 2.7021 42 1 3.1621 -3.0964 1.5528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384796814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:12 Heat of formation + Delta-G solvation = -34.923347 kcal Electronic energy + Delta-G solvation = -20302.386669 eV Core-core repulsion = 17475.539313 eV Total energy + Delta-G solvation = -2826.847356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27115 -39.07913 -36.58120 -33.92419 -33.70549 -31.87121 -29.37523 -28.64776 -26.88975 -25.93499 -23.70716 -23.06525 -22.36831 -21.23917 -20.72538 -18.49311 -17.80374 -16.92044 -16.48032 -16.02524 -15.62660 -15.61593 -15.40725 -14.78499 -14.55472 -14.19362 -14.04911 -13.77850 -13.39440 -13.01900 -12.89827 -12.82741 -12.77909 -12.69019 -12.59791 -12.44476 -12.16901 -12.06902 -11.91263 -11.76986 -11.58187 -11.20054 -10.67954 -10.47679 -10.35600 -10.11243 -8.95821 -8.37212 -6.07116 1.57017 1.64465 1.80022 2.64910 2.73123 3.00406 3.34029 3.47164 3.61106 3.72266 3.91123 4.02684 4.14013 4.20972 4.30378 4.36173 4.42859 4.44270 4.47727 4.53840 4.56722 4.62820 4.66046 4.82438 4.83262 4.87718 4.94276 5.03201 5.05512 5.06975 5.10396 5.16887 5.22175 5.29821 5.44925 5.51672 5.84194 6.20707 6.34139 6.38683 6.47254 6.87759 7.68216 9.01581 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.007449 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.218388 B = 3758.194070 C = 4482.919578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 H 0.074 0.926 4 C -0.180 4.180 5 C 0.058 3.942 6 H 0.065 0.935 7 N -0.516 5.516 8 C 0.022 3.978 9 C 0.116 3.884 10 C 0.009 3.991 11 C -0.540 4.540 12 H 0.033 0.967 13 C -0.017 4.017 14 N -0.940 5.940 15 Si 1.105 2.895 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.285 1.285 19 C -0.196 4.196 20 C -0.173 4.173 21 C 0.083 3.917 22 H 0.078 0.922 23 C -0.137 4.137 24 O -0.385 6.385 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.017 0.983 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.515 9.314 5.339 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 H 0.092 0.908 4 C -0.220 4.220 5 C -0.052 4.052 6 H 0.084 0.916 7 N -0.239 5.239 8 C -0.126 4.126 9 C -0.012 4.012 10 C 0.009 3.991 11 C -0.578 4.578 12 H 0.051 0.949 13 C -0.215 4.215 14 N -0.578 5.578 15 Si 0.931 3.069 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.211 1.211 19 C -0.234 4.234 20 C -0.210 4.210 21 C 0.026 3.974 22 H 0.096 0.904 23 C -0.195 4.195 24 O -0.304 6.304 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.035 0.965 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.732 7.550 6.245 12.482 hybrid contribution -0.872 1.569 -1.441 2.302 sum -8.604 9.120 4.805 13.427 Atomic orbital electron populations 1.21795 0.91647 1.02882 1.03407 1.23009 0.96392 0.95058 0.84006 0.90798 1.23621 0.98483 1.00522 0.99341 1.23129 0.88325 0.99183 0.94577 0.91628 1.61755 1.35922 1.11301 1.14889 1.22537 1.00746 0.87217 1.02061 1.21391 0.95150 0.97276 0.87349 1.19182 0.93771 0.96291 0.89896 1.21324 1.12201 0.92820 1.31432 0.94871 1.26656 1.00644 0.96274 0.97976 1.70793 1.16318 1.39776 1.30938 0.83056 0.73743 0.74757 0.75362 1.20348 1.21310 1.21147 1.22838 1.00996 1.02931 0.96678 1.22811 1.00717 0.91100 1.06332 1.22985 0.83976 0.97993 0.92476 0.90421 1.21698 1.01234 0.96646 0.99895 1.89125 1.27586 1.74762 1.38970 0.92392 0.91166 0.89594 0.90195 0.90677 0.94751 0.91047 0.91624 0.96490 0.93940 0.92683 0.91975 0.90342 0.89063 0.90682 0.91652 0.90741 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.52 71.98 0.69 -2.05 16 2 C 0.07 1.81 3.93 31.10 0.12 1.93 16 3 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 4 C -0.18 -5.09 5.35 31.61 0.17 -4.92 16 5 C 0.06 1.99 2.70 45.93 0.12 2.12 16 6 H 0.07 2.62 7.66 -2.39 -0.02 2.60 16 7 N -0.52 -20.03 4.44 -891.06 -3.96 -23.99 16 8 C 0.02 0.71 8.74 127.69 1.12 1.83 16 9 C 0.12 5.04 4.19 86.30 0.36 5.40 16 10 C 0.01 0.45 0.77 -52.93 -0.04 0.41 16 11 C -0.54 -29.40 8.54 25.60 0.22 -29.18 16 12 H 0.03 1.87 7.81 -2.91 -0.02 1.85 16 13 C -0.02 -0.94 5.44 84.65 0.46 -0.48 16 14 N -0.94 -55.52 13.37 21.45 0.29 -55.23 16 15 Si 1.11 51.14 29.90 68.60 2.05 53.19 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 C -0.20 -8.76 9.59 30.59 0.29 -8.46 16 20 C -0.17 -7.02 8.40 30.59 0.26 -6.77 16 21 C 0.08 2.60 3.44 31.10 0.11 2.71 16 22 H 0.08 2.39 5.84 -2.39 -0.01 2.37 16 23 C -0.14 -4.20 9.52 71.98 0.69 -3.51 16 24 O -0.38 -11.51 11.05 -148.98 -1.65 -13.16 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 2.22 5.36 -2.39 -0.01 2.20 16 29 H 0.07 2.08 7.88 -2.39 -0.02 2.06 16 30 H 0.03 0.98 5.95 -2.38 -0.01 0.96 16 31 H 0.07 2.09 6.11 -2.39 -0.01 2.08 16 32 H 0.07 2.27 5.84 -2.39 -0.01 2.25 16 33 H 0.02 0.68 7.41 -2.39 -0.02 0.66 16 34 H 0.04 2.10 6.31 -2.39 -0.02 2.08 16 35 H 0.26 15.47 5.80 -92.70 -0.54 14.93 16 36 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.09 3.20 7.81 -2.38 -0.02 3.19 16 39 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -60.98 321.44 2.50 -58.48 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 1.21 Total: 21.71 kcal Atomic # 6 Polarization: -45.55 SS G_CDS: 4.56 Total: -40.99 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -3.67 Total: -79.22 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -1.65 Total: -13.16 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Total: -60.98 2.50 -58.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384796814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.552 kcal (2) G-P(sol) polarization free energy of solvation -60.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds