Wall clock time and date at job start Mon Mar 30 2020 07:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47736 * 2 1 4 4 C 1.53086 * 109.48148 * 239.96301 * 2 1 3 5 5 C 1.53172 * 109.16514 * 297.62991 * 4 2 1 6 6 C 1.53186 * 109.03624 * 303.01647 * 5 4 2 7 7 H 1.09001 * 109.57091 * 297.04813 * 6 5 4 8 8 N 1.46899 * 109.52342 * 176.88583 * 6 5 4 9 9 C 1.46898 * 110.99695 * 50.81756 * 8 6 5 10 10 C 1.46891 * 110.99783 * 174.76940 * 8 6 5 11 11 C 1.53002 * 109.47263 * 163.16506 * 10 8 6 12 12 C 1.50705 * 115.55031 * 299.25733 * 11 10 8 13 13 H 1.07996 * 119.99757 * 100.01090 * 12 11 10 14 14 C 1.37872 * 119.99763 * 279.73547 * 12 11 10 15 15 N 1.31515 * 119.99723 * 188.87520 * 14 12 11 16 16 Si 1.86799 * 120.00247 * 8.88586 * 14 12 11 17 17 H 1.48493 * 109.47399 * 89.47733 * 16 14 12 18 18 H 1.48494 * 109.46904 * 209.47995 * 16 14 12 19 19 H 1.48498 * 109.46816 * 329.47710 * 16 14 12 20 20 C 1.53006 * 117.51627 * 84.95507 * 11 10 8 21 21 C 1.52996 * 117.49976 * 153.58439 * 11 10 8 22 22 C 1.53089 * 109.15832 * 56.98150 * 6 5 4 23 23 O 1.42903 * 109.47840 * 120.02040 * 2 1 3 24 24 H 1.09003 * 109.47230 * 299.97952 * 1 2 3 25 25 H 1.09000 * 109.46835 * 59.97717 * 1 2 3 26 26 H 1.08997 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.52261 * 57.53257 * 4 2 1 28 28 H 1.09004 * 109.52506 * 177.65464 * 4 2 1 29 29 H 1.08997 * 109.54621 * 183.15523 * 5 4 2 30 30 H 1.09003 * 109.54803 * 62.88545 * 5 4 2 31 31 H 1.08997 * 109.46893 * 183.48467 * 9 8 6 32 32 H 1.09000 * 109.47398 * 303.48750 * 9 8 6 33 33 H 1.09004 * 109.47457 * 63.48880 * 9 8 6 34 34 H 1.09005 * 109.47359 * 43.16693 * 10 8 6 35 35 H 1.09000 * 109.47423 * 283.16547 * 10 8 6 36 36 H 0.97000 * 120.00277 * 180.02562 * 15 14 12 37 37 H 1.08996 * 117.49930 * 214.97576 * 20 11 10 38 38 H 1.08996 * 117.49781 * 359.97438 * 20 11 10 39 39 H 1.08995 * 117.50216 * 359.97438 * 21 11 10 40 40 H 1.08998 * 117.49816 * 144.97902 * 21 11 10 41 41 H 1.09005 * 109.48337 * 62.37397 * 22 6 5 42 42 H 1.09002 * 109.47756 * 182.41299 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 1.5757 -2.1814 -1.2119 6 6 2.0765 -2.8323 0.0813 7 1 3.1664 -2.8409 0.0874 8 7 1.5740 -4.2102 0.1639 9 6 1.8546 -4.9479 -1.0750 10 6 2.1351 -4.9060 1.3295 11 6 1.3005 -6.1528 1.6297 12 6 -0.1480 -5.9011 1.9608 13 1 -0.9068 -6.0409 1.2051 14 6 -0.5050 -5.4978 3.2300 15 7 -1.7741 -5.4464 3.5709 16 14 0.8139 -5.0240 4.4651 17 1 1.1077 -3.5735 4.3437 18 1 0.3339 -5.3186 5.8391 19 1 2.0485 -5.8035 4.1943 20 6 1.6373 -7.4312 0.8595 21 6 1.9965 -7.3141 2.3422 22 6 1.5645 -2.0283 1.2793 23 8 2.0066 -0.6740 1.1665 24 1 -0.3634 0.5135 0.8902 25 1 -0.3633 0.5142 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6421 -0.2360 -2.1398 28 1 3.1298 -0.6866 -1.2714 29 1 1.9826 -2.7160 -2.0702 30 1 0.4867 -2.2181 -1.2406 31 1 1.4181 -5.9446 -1.0111 32 1 1.4211 -4.4150 -1.9214 33 1 2.9327 -5.0315 -1.2120 34 1 2.1179 -4.2408 2.1929 35 1 3.1632 -5.1995 1.1173 36 1 -2.0254 -5.1623 4.4637 37 1 0.8113 -8.0902 0.5923 38 1 2.4533 -7.3841 0.1385 39 1 3.0491 -7.1902 2.5967 40 1 1.4069 -7.8959 3.0506 41 1 0.4749 -2.0548 1.2960 42 1 1.9530 -2.4619 2.2008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401458758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:52 Heat of formation + Delta-G solvation = -32.378141 kcal Electronic energy + Delta-G solvation = -20431.863633 eV Core-core repulsion = 17605.126645 eV Total energy + Delta-G solvation = -2826.736988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07124 -39.24107 -36.93185 -34.24682 -34.10392 -31.75335 -29.54791 -28.60968 -27.31939 -25.30721 -24.70208 -23.18877 -22.40111 -20.74538 -20.09751 -18.19013 -17.83413 -17.13443 -16.66599 -16.23710 -16.08762 -15.78554 -15.14337 -14.98238 -14.67002 -14.45855 -14.20741 -13.87972 -13.67385 -13.41507 -13.11506 -13.01925 -12.95400 -12.51644 -12.32135 -12.17308 -12.14950 -11.92035 -11.84738 -11.69171 -11.38629 -11.05782 -10.66167 -10.55375 -10.38316 -10.15872 -8.99992 -8.19046 -6.18622 1.35277 1.39198 1.49593 2.42808 2.67168 3.09901 3.17832 3.43405 3.75555 3.84989 3.94342 3.98293 4.20054 4.20426 4.27991 4.39428 4.47543 4.50762 4.51798 4.58518 4.58998 4.66228 4.76514 4.81733 4.86899 4.91494 4.93911 5.01058 5.10639 5.12503 5.15386 5.20553 5.24524 5.43024 5.48732 5.54209 5.80640 6.13726 6.29389 6.44118 6.48897 6.85977 7.46198 8.97354 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.008380 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.692153 B = 3340.483963 C = 3996.337265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.074 3.926 3 H 0.122 0.878 4 C -0.138 4.138 5 C -0.115 4.115 6 C 0.059 3.941 7 H 0.043 0.957 8 N -0.534 5.534 9 C 0.028 3.972 10 C 0.098 3.902 11 C -0.016 4.016 12 C -0.445 4.445 13 H 0.028 0.972 14 C 0.022 3.978 15 N -0.955 5.955 16 Si 0.914 3.086 17 H -0.279 1.279 18 H -0.301 1.301 19 H -0.219 1.219 20 C -0.164 4.164 21 C -0.188 4.188 22 C 0.070 3.930 23 O -0.395 6.395 24 H 0.053 0.947 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.260 0.740 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.079 8.348 -10.383 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.017 3.983 3 H 0.139 0.861 4 C -0.176 4.176 5 C -0.152 4.152 6 C -0.049 4.049 7 H 0.060 0.940 8 N -0.258 5.258 9 C -0.120 4.120 10 C -0.030 4.030 11 C -0.018 4.018 12 C -0.483 4.483 13 H 0.046 0.954 14 C -0.174 4.174 15 N -0.596 5.596 16 Si 0.740 3.260 17 H -0.205 1.205 18 H -0.229 1.229 19 H -0.142 1.142 20 C -0.201 4.201 21 C -0.226 4.226 22 C -0.007 4.007 23 O -0.314 6.314 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.066 0.934 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.583 8.504 -10.059 16.897 hybrid contribution 0.380 -0.134 0.906 0.991 sum 10.962 8.370 -9.153 16.553 Atomic orbital electron populations 1.22449 0.96406 1.02304 1.03190 1.22495 0.93780 0.97035 0.84951 0.86076 1.22169 1.01881 0.94837 0.98698 1.21763 1.01541 0.95960 0.95961 1.22157 0.96880 0.89154 0.96753 0.93961 1.61636 1.59885 1.01056 1.03271 1.22482 0.98690 0.99299 0.91495 1.21720 0.93823 0.95004 0.92449 1.19276 0.93790 0.87044 1.01648 1.20198 0.90043 1.42780 0.95251 0.95380 1.25592 0.96484 0.95437 0.99895 1.70060 1.18211 1.50704 1.20626 0.86297 0.82685 0.79363 0.77699 1.20522 1.22877 1.14155 1.22855 1.02062 1.01616 0.93565 1.23029 0.99828 1.04530 0.95255 1.22429 0.98791 0.81804 0.97710 1.87937 1.74125 1.24328 1.45017 0.92813 0.89118 0.93420 0.88096 0.90673 0.89782 0.91650 0.91624 0.90260 0.95200 0.93372 0.94921 0.93159 0.90809 0.88142 0.88820 0.91055 0.93641 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.56 8.65 71.98 0.62 -3.93 16 2 C 0.07 1.77 3.91 30.62 0.12 1.89 16 3 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 4 C -0.14 -2.77 5.64 30.68 0.17 -2.60 16 5 C -0.11 -2.89 4.33 30.71 0.13 -2.76 16 6 C 0.06 1.89 2.15 45.01 0.10 1.99 16 7 H 0.04 1.31 8.13 -2.39 -0.02 1.29 16 8 N -0.53 -19.64 4.40 -896.52 -3.95 -23.59 16 9 C 0.03 0.84 8.60 127.69 1.10 1.94 16 10 C 0.10 3.89 4.46 86.31 0.38 4.28 16 11 C -0.02 -0.73 0.72 -52.92 -0.04 -0.77 16 12 C -0.44 -25.10 9.19 25.60 0.24 -24.86 16 13 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 14 C 0.02 1.28 5.47 84.65 0.46 1.74 16 15 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 16 Si 0.91 44.69 25.32 68.60 1.74 46.43 16 17 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 18 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 19 H -0.22 -9.53 5.49 99.48 0.55 -8.99 16 20 C -0.16 -6.25 8.24 30.60 0.25 -5.99 16 21 C -0.19 -7.58 7.42 30.59 0.23 -7.35 16 22 C 0.07 2.55 5.70 72.01 0.41 2.96 16 23 O -0.40 -12.88 10.60 -148.98 -1.58 -14.46 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.42 4.97 -2.39 -0.01 1.40 16 27 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.08 1.82 6.46 -2.39 -0.02 1.80 16 30 H 0.06 1.84 6.62 -2.39 -0.02 1.82 16 31 H 0.07 2.16 5.78 -2.39 -0.01 2.14 16 32 H 0.08 2.09 6.05 -2.39 -0.01 2.07 16 33 H 0.03 0.79 8.11 -2.38 -0.02 0.77 16 34 H 0.05 2.06 3.70 -2.38 -0.01 2.05 16 35 H 0.03 1.15 7.99 -2.39 -0.02 1.13 16 36 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.10 3.19 7.59 -2.39 -0.02 3.17 16 39 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.05 1.87 6.34 -2.38 -0.02 1.85 16 42 H 0.07 2.76 6.36 -2.39 -0.02 2.75 16 Total: -1.00 -66.73 308.05 1.51 -65.21 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.82 Total: 20.33 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 4.18 Total: -33.47 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -3.65 Total: -84.04 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.58 Total: -14.46 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.74 Total: 46.43 kcal Total: -66.73 1.51 -65.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401458758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.837 kcal (2) G-P(sol) polarization free energy of solvation -66.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds