Wall clock time and date at job start Mon Mar 30 2020 07:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.48357 * 2 1 4 4 C 1.53092 * 109.47801 * 120.02730 * 2 1 3 5 5 C 1.53189 * 109.21276 * 62.40976 * 4 2 1 6 6 C 1.53177 * 109.03333 * 56.88466 * 5 4 2 7 7 H 1.08999 * 109.52429 * 63.04959 * 6 5 4 8 8 N 1.46900 * 109.52421 * 183.17777 * 6 5 4 9 9 C 1.46898 * 110.99934 * 303.82902 * 8 6 5 10 10 C 1.46903 * 111.00022 * 179.87713 * 8 6 5 11 11 C 1.52997 * 109.46642 * 199.33187 * 10 8 6 12 12 C 1.50706 * 115.55228 * 55.11041 * 11 10 8 13 13 H 1.07995 * 119.99671 * 264.77037 * 12 11 10 14 14 C 1.37876 * 119.99836 * 84.77515 * 12 11 10 15 15 N 1.31509 * 120.00323 * 353.27786 * 14 12 11 16 16 Si 1.86805 * 119.99739 * 173.27698 * 14 12 11 17 17 H 1.48504 * 109.46910 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47131 * 119.99733 * 16 14 12 19 19 H 1.48502 * 109.47163 * 239.99870 * 16 14 12 20 20 C 1.52999 * 117.49596 * 200.77578 * 11 10 8 21 21 C 1.53000 * 117.49952 * 269.43570 * 11 10 8 22 22 C 1.53090 * 109.21341 * 303.11384 * 6 5 4 23 23 O 1.42896 * 109.48113 * 239.97188 * 2 1 3 24 24 H 1.08996 * 109.47214 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47263 * 300.03038 * 1 2 3 26 26 H 1.09001 * 109.46970 * 60.02836 * 1 2 3 27 27 H 1.09005 * 109.52608 * 182.27863 * 4 2 1 28 28 H 1.08997 * 109.52437 * 302.46976 * 4 2 1 29 29 H 1.08999 * 109.49564 * 297.05010 * 5 4 2 30 30 H 1.09002 * 109.59601 * 176.78539 * 5 4 2 31 31 H 1.09004 * 109.47381 * 301.63093 * 9 8 6 32 32 H 1.09005 * 109.47323 * 61.62571 * 9 8 6 33 33 H 1.08999 * 109.47464 * 181.63062 * 9 8 6 34 34 H 1.08992 * 109.47120 * 79.33322 * 10 8 6 35 35 H 1.09003 * 109.46782 * 319.32680 * 10 8 6 36 36 H 0.97003 * 120.00153 * 2.38410 * 15 14 12 37 37 H 1.09008 * 117.50147 * 215.00155 * 20 11 10 38 38 H 1.09002 * 117.49972 * 0.02562 * 20 11 10 39 39 H 1.08999 * 117.49825 * 359.97438 * 21 11 10 40 40 H 1.09000 * 117.50232 * 145.00361 * 21 11 10 41 41 H 1.08999 * 109.47904 * 177.55660 * 22 6 5 42 42 H 1.08998 * 109.48510 * 297.59544 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5770 -2.1819 1.2129 6 6 2.0764 -2.8322 -0.0809 7 1 3.1664 -2.8410 -0.0870 8 7 1.5740 -4.2102 -0.1634 9 6 1.9660 -4.9853 1.0213 10 6 2.0323 -4.8647 -1.3961 11 6 1.1399 -6.0710 -1.6950 12 6 -0.3365 -5.7816 -1.7820 13 1 -0.9664 -5.9231 -0.9162 14 6 -0.8831 -5.3363 -2.9669 15 7 -0.1006 -5.0377 -3.9808 16 14 -2.7352 -5.1571 -3.1319 17 1 -3.3865 -5.5548 -1.8580 18 1 -3.0703 -3.7434 -3.4395 19 1 -3.2212 -6.0311 -4.2298 20 6 1.7028 -7.1550 -2.6165 21 6 1.5619 -7.4228 -1.1159 22 6 1.5645 -2.0285 -1.2790 23 8 2.0066 -0.6742 -1.1663 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5143 0.8896 26 1 -0.3633 0.5134 -0.8903 27 1 3.1298 -0.6875 1.2711 28 1 1.6420 -0.2357 2.1399 29 1 0.4880 -2.2186 1.2426 30 1 1.9846 -2.7166 2.0709 31 1 3.0525 -4.9891 1.1098 32 1 1.5306 -4.5326 1.9122 33 1 1.6061 -6.0092 0.9210 34 1 3.0625 -5.1974 -1.2693 35 1 1.9778 -4.1583 -2.2244 36 1 0.8584 -5.1635 -3.9069 37 1 1.0052 -7.6589 -3.2855 38 1 2.7090 -7.0090 -3.0093 39 1 2.4756 -7.4528 -0.5223 40 1 0.7718 -8.1029 -0.7978 41 1 1.9531 -2.4622 -2.2004 42 1 0.4750 -2.0549 -1.2958 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401458759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:54 Heat of formation + Delta-G solvation = -39.297559 kcal Electronic energy + Delta-G solvation = -20415.798083 eV Core-core repulsion = 17588.761047 eV Total energy + Delta-G solvation = -2827.037036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06804 -39.22711 -36.99723 -34.24949 -33.83077 -31.77621 -29.47945 -28.35120 -26.84930 -25.34217 -24.72130 -23.05515 -22.45619 -21.10509 -20.12561 -18.46330 -17.75710 -17.07934 -16.31069 -16.21445 -15.97945 -15.61244 -15.27081 -15.00968 -14.52736 -14.28361 -14.18924 -13.97131 -13.69105 -13.40082 -13.10493 -12.87156 -12.64398 -12.50684 -12.44019 -12.19067 -12.14978 -11.93255 -11.91474 -11.74176 -11.20178 -11.06583 -10.41281 -10.35581 -10.33100 -10.11145 -9.03066 -8.39170 -6.07025 1.55511 1.63144 1.78844 2.63053 2.68959 3.13440 3.36167 3.41873 3.74842 3.83782 3.93924 3.97468 4.18777 4.19977 4.28076 4.37845 4.43729 4.49208 4.55656 4.56107 4.59788 4.64560 4.75404 4.81491 4.84192 4.88056 4.94937 4.99498 5.06761 5.10485 5.13198 5.16918 5.23418 5.44516 5.46919 5.55243 6.14028 6.21083 6.38117 6.43323 6.45426 6.88511 7.68615 9.01451 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.008366 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.353184 B = 3346.199590 C = 4170.589120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.074 3.926 3 H 0.121 0.879 4 C -0.138 4.138 5 C -0.111 4.111 6 C 0.060 3.940 7 H 0.033 0.967 8 N -0.524 5.524 9 C 0.031 3.969 10 C 0.105 3.895 11 C 0.012 3.988 12 C -0.539 4.539 13 H 0.035 0.965 14 C -0.021 4.021 15 N -0.939 5.939 16 Si 1.105 2.895 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.286 1.286 20 C -0.189 4.189 21 C -0.175 4.175 22 C 0.078 3.922 23 O -0.397 6.397 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.023 0.977 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.012 0.988 35 H 0.047 0.953 36 H 0.263 0.737 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.281 7.539 11.682 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.017 3.983 3 H 0.139 0.861 4 C -0.176 4.176 5 C -0.149 4.149 6 C -0.049 4.049 7 H 0.050 0.950 8 N -0.248 5.248 9 C -0.117 4.117 10 C -0.023 4.023 11 C 0.011 3.989 12 C -0.577 4.577 13 H 0.054 0.946 14 C -0.220 4.220 15 N -0.577 5.577 16 Si 0.930 3.070 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.212 1.212 20 C -0.227 4.227 21 C -0.212 4.212 22 C 0.000 4.000 23 O -0.315 6.315 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.682 8.132 10.508 13.555 hybrid contribution 1.948 -1.021 0.639 2.290 sum 4.630 7.111 11.147 14.009 Atomic orbital electron populations 1.22436 0.96178 1.02361 1.03256 1.22497 0.93994 0.96969 0.84850 0.86119 1.22174 1.01730 0.94834 0.98864 1.21703 1.01618 0.95861 0.95693 1.22157 0.96322 0.89334 0.97066 0.94958 1.61677 1.60108 1.00925 1.02123 1.22411 0.97540 0.98800 0.92919 1.21588 0.93153 0.96051 0.91519 1.19147 0.94712 0.86245 0.98816 1.21269 0.91387 1.47304 0.97761 0.94622 1.26702 1.09116 0.93461 0.92702 1.70789 1.06335 1.46174 1.34371 0.83063 0.71442 0.76685 0.75771 1.20197 1.21335 1.21198 1.22711 0.99862 1.07213 0.92887 1.22892 1.01425 1.02074 0.94792 1.22350 0.98740 0.81549 0.97314 1.87942 1.74190 1.24396 1.45020 0.93341 0.89017 0.92720 0.90995 0.87921 0.91418 0.90198 0.95901 0.90171 0.91904 0.97008 0.93440 0.92684 0.92143 0.90469 0.89287 0.90588 0.91539 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.57 8.65 71.98 0.62 -3.95 16 2 C 0.07 1.84 3.91 30.63 0.12 1.96 16 3 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 4 C -0.14 -2.95 5.64 30.69 0.17 -2.77 16 5 C -0.11 -2.96 4.53 30.72 0.14 -2.82 16 6 C 0.06 2.05 2.14 45.00 0.10 2.15 16 7 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 8 N -0.52 -20.45 4.26 -896.52 -3.82 -24.27 16 9 C 0.03 1.01 8.86 127.69 1.13 2.15 16 10 C 0.10 4.63 4.69 86.30 0.41 5.04 16 11 C 0.01 0.56 0.80 -52.93 -0.04 0.52 16 12 C -0.54 -29.55 8.53 25.60 0.22 -29.33 16 13 H 0.04 2.02 7.82 -2.91 -0.02 2.00 16 14 C -0.02 -1.18 5.39 84.66 0.46 -0.72 16 15 N -0.94 -56.03 13.55 21.45 0.29 -55.74 16 16 Si 1.11 51.51 29.91 68.60 2.05 53.56 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 20 C -0.19 -8.73 8.78 30.62 0.27 -8.46 16 21 C -0.17 -7.34 8.47 30.62 0.26 -7.08 16 22 C 0.08 2.98 5.57 72.01 0.40 3.38 16 23 O -0.40 -13.55 10.60 -148.98 -1.58 -15.13 16 24 H 0.05 1.44 4.98 -2.39 -0.01 1.43 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 1.96 6.62 -2.39 -0.02 1.94 16 30 H 0.08 1.87 6.59 -2.39 -0.02 1.85 16 31 H 0.02 0.67 8.14 -2.38 -0.02 0.66 16 32 H 0.08 2.25 6.41 -2.38 -0.02 2.24 16 33 H 0.06 2.20 6.02 -2.39 -0.01 2.19 16 34 H 0.01 0.49 7.96 -2.39 -0.02 0.47 16 35 H 0.05 2.33 5.14 -2.39 -0.01 2.31 16 36 H 0.26 15.70 6.11 -92.71 -0.57 15.13 16 37 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 38 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.09 3.26 7.90 -2.39 -0.02 3.24 16 40 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.07 2.90 6.18 -2.39 -0.01 2.88 16 42 H 0.05 1.99 6.34 -2.39 -0.02 1.98 16 Total: -1.00 -62.71 315.09 2.38 -60.33 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 1.18 Total: 21.21 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 4.25 Total: -39.96 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -3.53 Total: -80.01 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -1.58 Total: -15.13 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.56 kcal Total: -62.71 2.38 -60.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401458759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.031 kcal (2) G-P(sol) polarization free energy of solvation -62.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds