Wall clock time and date at job start Mon Mar 30 2020 07:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.48886 * 2 1 4 4 C 1.53089 * 109.47854 * 120.02830 * 2 1 3 5 5 C 1.53176 * 109.16478 * 177.59064 * 4 2 1 6 6 C 1.53174 * 109.03719 * 303.02167 * 5 4 2 7 7 H 1.09001 * 109.52357 * 297.07270 * 6 5 4 8 8 N 1.46904 * 109.52385 * 176.94482 * 6 5 4 9 9 C 1.46906 * 110.99915 * 56.04547 * 8 6 5 10 10 C 1.46902 * 111.00125 * 179.97438 * 8 6 5 11 11 C 1.52997 * 109.46970 * 161.80403 * 10 8 6 12 12 C 1.50699 * 115.55013 * 147.99386 * 11 10 8 13 13 H 1.07996 * 120.00053 * 114.56144 * 12 11 10 14 14 C 1.37878 * 119.99632 * 294.55720 * 12 11 10 15 15 N 1.31516 * 120.00180 * 4.77243 * 14 12 11 16 16 Si 1.86800 * 119.99891 * 184.77748 * 14 12 11 17 17 H 1.48509 * 109.47203 * 89.99981 * 16 14 12 18 18 H 1.48503 * 109.47394 * 209.99735 * 16 14 12 19 19 H 1.48498 * 109.47398 * 330.00144 * 16 14 12 20 20 C 1.53003 * 117.50025 * 2.27818 * 11 10 8 21 21 C 1.52996 * 60.00325 * 252.51391 * 20 11 10 22 22 C 1.53090 * 109.16366 * 56.98024 * 6 5 4 23 23 O 1.42902 * 109.48122 * 239.97073 * 2 1 3 24 24 H 1.09003 * 109.46756 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47443 * 300.03195 * 1 2 3 26 26 H 1.09001 * 109.46741 * 60.03157 * 1 2 3 27 27 H 1.08997 * 109.52683 * 297.49815 * 4 2 1 28 28 H 1.09005 * 109.52379 * 57.62406 * 4 2 1 29 29 H 1.09001 * 109.53901 * 62.88836 * 5 4 2 30 30 H 1.09001 * 109.54705 * 183.06280 * 5 4 2 31 31 H 1.09004 * 109.46676 * 52.05409 * 9 8 6 32 32 H 1.08991 * 109.47258 * 172.05714 * 9 8 6 33 33 H 1.08999 * 109.46789 * 292.06426 * 9 8 6 34 34 H 1.09002 * 109.46909 * 281.80051 * 10 8 6 35 35 H 1.08994 * 109.47027 * 41.80008 * 10 8 6 36 36 H 0.97002 * 120.00246 * 185.00177 * 15 14 12 37 37 H 1.08999 * 117.49897 * 0.02562 * 20 11 10 38 38 H 1.08997 * 117.49474 * 145.02037 * 20 11 10 39 39 H 1.08997 * 117.50162 * 252.51361 * 21 20 11 40 40 H 1.08999 * 117.49859 * 107.48975 * 21 20 11 41 41 H 1.08998 * 109.48460 * 182.41242 * 22 6 5 42 42 H 1.08998 * 109.48401 * 62.37376 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 3.5710 -0.7709 1.2122 6 6 4.0176 -1.4601 -0.0808 7 1 3.6613 -2.4902 -0.0863 8 7 5.4843 -1.4475 -0.1625 9 6 6.0831 -2.0727 1.0244 10 6 5.9487 -2.1024 -1.3928 11 6 7.3937 -1.6877 -1.6770 12 6 8.2459 -2.7269 -2.3588 13 1 8.6168 -2.5504 -3.3576 14 6 8.5523 -3.9028 -1.7074 15 7 8.0249 -4.1590 -0.5301 16 14 9.7164 -5.1320 -2.4968 17 1 11.1104 -4.8298 -2.0830 18 1 9.3572 -6.5051 -2.0601 19 1 9.6076 -5.0382 -3.9748 20 6 8.0768 -0.7670 -0.6638 21 6 7.6517 -0.2211 -2.0283 22 6 3.4308 -0.7093 -1.2790 23 8 2.0066 -0.6742 -1.1664 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5143 0.8897 26 1 -0.3633 0.5134 -0.8903 27 1 1.7148 -0.1844 2.1399 28 1 1.6433 -1.7371 1.2715 29 1 3.9688 0.2435 1.2409 30 1 3.9391 -1.3314 2.0716 31 1 5.6396 -3.0563 1.1797 32 1 7.1578 -2.1779 0.8765 33 1 5.8958 -1.4479 1.8976 34 1 5.8987 -3.1843 -1.2695 35 1 5.3138 -1.8020 -2.2262 36 1 8.2956 -4.9507 -0.0393 37 1 7.4969 -0.4571 0.2055 38 1 9.1429 -0.9130 -0.4900 39 1 8.4380 -0.0078 -2.7523 40 1 6.7919 0.4483 -2.0569 41 1 3.7100 -1.2203 -2.2004 42 1 3.8193 0.3089 -1.2957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401458760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:58 Heat of formation + Delta-G solvation = -18.301031 kcal Electronic energy + Delta-G solvation = -20075.519240 eV Core-core repulsion = 17249.392682 eV Total energy + Delta-G solvation = -2826.126558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.56369 -37.46629 -34.96366 -33.11377 -31.97802 -30.98341 -27.87855 -26.65385 -25.30175 -23.81597 -22.93743 -21.17368 -20.90353 -19.68516 -18.58444 -16.29255 -16.24875 -15.68700 -14.86521 -14.62418 -14.38685 -14.19913 -14.05502 -13.26074 -12.95266 -12.72538 -12.54439 -12.32852 -12.19748 -12.02906 -11.31267 -11.09306 -11.03907 -10.98932 -10.94434 -10.74786 -10.64300 -10.46571 -10.36439 -9.97102 -9.83824 -9.27322 -9.15186 -8.73144 -8.47491 -7.90660 -7.40500 -6.02927 -4.07862 3.29031 3.36384 3.39397 3.88230 4.40038 4.69696 4.81072 4.97375 5.10354 5.20596 5.26005 5.31182 5.52227 5.54172 5.60790 5.65175 5.75751 5.85251 5.97549 6.06805 6.10063 6.18694 6.22128 6.34095 6.41812 6.45622 6.51238 6.58791 6.70498 6.88926 6.91047 7.14316 7.26470 7.33339 7.40921 7.58377 7.62925 7.86384 8.00216 8.10237 8.55301 8.93759 9.56169 11.03551 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034659 B = 0.005389 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.665443 B = 5194.383074 C = 5260.260211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.056 0.944 4 C -0.147 4.147 5 C -0.114 4.114 6 C 0.052 3.948 7 H 0.039 0.961 8 N -0.531 5.531 9 C 0.032 3.968 10 C 0.094 3.906 11 C 0.051 3.949 12 C -0.491 4.491 13 H 0.058 0.942 14 C 0.072 3.928 15 N -0.878 5.878 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.176 4.176 21 C -0.204 4.204 22 C 0.069 3.931 23 O -0.383 6.383 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.015 0.985 32 H 0.105 0.895 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.259 0.741 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 6.512 4.097 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 H 0.074 0.926 4 C -0.185 4.185 5 C -0.152 4.152 6 C -0.058 4.058 7 H 0.057 0.943 8 N -0.256 5.256 9 C -0.115 4.115 10 C -0.033 4.033 11 C 0.050 3.950 12 C -0.529 4.529 13 H 0.076 0.924 14 C -0.131 4.131 15 N -0.516 5.516 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.213 4.213 21 C -0.241 4.241 22 C -0.008 4.008 23 O -0.302 6.302 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.034 0.966 32 H 0.123 0.877 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.051 6.732 4.056 13.561 hybrid contribution 0.710 -1.477 -0.018 1.639 sum -10.341 5.255 4.038 12.282 Atomic orbital electron populations 1.21758 0.93585 1.02712 1.02038 1.22060 0.94567 0.95109 0.85656 0.92649 1.22232 0.96609 1.01584 0.98124 1.21667 0.94152 1.01558 0.97835 1.22154 0.90524 0.97932 0.95174 0.94266 1.62160 1.03287 1.55910 1.04241 1.22462 1.03467 0.94838 0.90765 1.21753 0.95405 0.97901 0.88204 1.18848 0.91541 0.86979 0.97602 1.20589 1.30723 1.00274 1.01360 0.92380 1.24935 0.95624 0.97243 0.95278 1.69941 1.41152 1.27316 1.13162 0.86657 0.81369 0.80608 0.79759 1.20737 1.21361 1.19922 1.22867 0.99059 1.07207 0.92205 1.22799 1.01687 0.99942 0.99686 1.22689 0.79365 1.00252 0.98475 1.87916 1.21647 1.78005 1.42599 0.91964 0.91413 0.92040 0.91229 0.91369 0.91290 0.91498 0.96618 0.87670 0.94263 0.92343 0.93602 0.93154 0.89740 0.91698 0.91464 0.91530 0.88474 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.56 37.16 0.36 -1.09 16 2 C 0.08 1.05 3.26 -26.69 -0.09 0.96 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.15 -1.79 5.42 -26.59 -0.14 -1.94 16 5 C -0.11 -1.65 4.84 -26.55 -0.13 -1.77 16 6 C 0.05 0.88 2.11 -67.57 -0.14 0.74 16 7 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 8 N -0.53 -10.44 3.63 -234.72 -0.85 -11.30 16 9 C 0.03 0.65 7.55 60.07 0.45 1.11 16 10 C 0.09 2.13 4.75 -3.82 -0.02 2.11 16 11 C 0.05 1.24 1.69 -155.66 -0.26 0.98 16 12 C -0.49 -13.22 8.80 -34.44 -0.30 -13.52 16 13 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 14 C 0.07 1.91 5.33 -17.82 -0.09 1.82 16 15 N -0.88 -23.62 11.41 55.43 0.63 -22.99 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 20 C -0.18 -4.05 8.06 -26.73 -0.22 -4.27 16 21 C -0.20 -4.52 9.94 -26.73 -0.27 -4.78 16 22 C 0.07 1.12 5.90 37.20 0.22 1.34 16 23 O -0.38 -5.98 10.41 -35.23 -0.37 -6.35 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.97 6.73 -51.93 -0.35 0.62 16 31 H 0.02 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.10 2.42 5.01 -51.93 -0.26 2.16 16 33 H 0.04 0.69 6.80 -51.93 -0.35 0.34 16 34 H 0.06 1.50 6.80 -51.93 -0.35 1.15 16 35 H 0.05 0.98 5.64 -51.93 -0.29 0.69 16 36 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 37 H 0.08 1.87 5.59 -51.93 -0.29 1.58 16 38 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.10 1.65 6.20 -51.93 -0.32 1.33 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -26.84 318.24 -8.71 -35.54 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.26 Total: 2.81 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -0.63 Total: -18.31 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.22 Total: -34.28 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.37 Total: -6.35 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.84 -8.71 -35.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401458760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.241 kcal (2) G-P(sol) polarization free energy of solvation -26.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds