Wall clock time and date at job start Mon Mar 30 2020 07:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.48239 * 2 1 4 4 C 1.53097 * 109.47621 * 239.96824 * 2 1 3 5 5 C 1.53175 * 109.15892 * 182.40952 * 4 2 1 6 6 C 1.53181 * 109.04071 * 56.97920 * 5 4 2 7 7 H 1.09001 * 109.52181 * 62.92481 * 6 5 4 8 8 N 1.46896 * 109.52674 * 183.04871 * 6 5 4 9 9 C 1.46904 * 110.99976 * 69.33828 * 8 6 5 10 10 C 1.46896 * 111.00158 * 193.29352 * 8 6 5 11 11 C 1.53007 * 109.47029 * 168.73346 * 10 8 6 12 12 C 1.50699 * 115.54889 * 302.97553 * 11 10 8 13 13 H 1.08000 * 119.99536 * 143.14001 * 12 11 10 14 14 C 1.37874 * 119.99877 * 323.13565 * 12 11 10 15 15 N 1.31525 * 119.99637 * 169.12416 * 14 12 11 16 16 Si 1.86793 * 120.00256 * 349.12902 * 14 12 11 17 17 H 1.48509 * 109.47232 * 95.42251 * 16 14 12 18 18 H 1.48504 * 109.47433 * 215.41702 * 16 14 12 19 19 H 1.48495 * 109.47333 * 335.41885 * 16 14 12 20 20 C 1.53000 * 117.49542 * 157.30573 * 11 10 8 21 21 C 1.52999 * 117.49559 * 88.64730 * 11 10 8 22 22 C 1.53092 * 109.16180 * 303.01906 * 6 5 4 23 23 O 1.42902 * 109.48115 * 120.02620 * 2 1 3 24 24 H 1.08999 * 109.46925 * 299.97752 * 1 2 3 25 25 H 1.08996 * 109.47147 * 59.97131 * 1 2 3 26 26 H 1.08997 * 109.47135 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.52128 * 302.30766 * 4 2 1 28 28 H 1.08994 * 109.52073 * 62.43986 * 4 2 1 29 29 H 1.09005 * 109.54133 * 176.84584 * 5 4 2 30 30 H 1.08999 * 109.54538 * 297.11250 * 5 4 2 31 31 H 1.08998 * 109.47119 * 66.66360 * 9 8 6 32 32 H 1.08996 * 109.47173 * 186.66223 * 9 8 6 33 33 H 1.08998 * 109.47039 * 306.66562 * 9 8 6 34 34 H 1.08999 * 109.47215 * 288.73098 * 10 8 6 35 35 H 1.08994 * 109.47398 * 48.73359 * 10 8 6 36 36 H 0.96997 * 119.99786 * 180.02562 * 15 14 12 37 37 H 1.08995 * 117.50146 * 0.02562 * 20 11 10 38 38 H 1.09001 * 117.49595 * 145.02159 * 20 11 10 39 39 H 1.09000 * 117.49458 * 214.97484 * 21 11 10 40 40 H 1.08998 * 117.50420 * 359.97438 * 21 11 10 41 41 H 1.08998 * 109.48306 * 297.62604 * 22 6 5 42 42 H 1.09003 * 109.47927 * 177.58709 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7224 -1.2496 5 6 3.5710 -0.7710 -1.2122 6 6 4.0176 -1.4601 0.0809 7 1 3.6613 -2.4902 0.0865 8 7 5.4842 -1.4476 0.1626 9 6 5.9877 -0.0853 0.3830 10 6 5.9610 -2.3608 1.2099 11 6 7.4755 -2.5368 1.0824 12 6 7.9612 -3.0401 -0.2525 13 1 8.8871 -2.6678 -0.6655 14 6 7.2237 -3.9759 -0.9462 15 7 7.5263 -4.2575 -2.1948 16 14 5.7949 -4.8437 -0.1129 17 1 4.5293 -4.1383 -0.4387 18 1 5.7181 -6.2461 -0.5953 19 1 6.0011 -4.8367 1.3576 20 6 8.2418 -2.9857 2.3282 21 6 8.3674 -1.5437 1.8301 22 6 3.4308 -0.7093 1.2790 23 8 2.0066 -0.6741 1.1664 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5143 -0.8897 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6442 -1.7376 -1.2708 28 1 1.7138 -0.1851 -2.1399 29 1 3.9390 -1.3329 -2.0707 30 1 3.9689 0.2434 -1.2409 31 1 5.6795 0.2608 1.3695 32 1 7.0759 -0.0857 0.3216 33 1 5.5810 0.5799 -0.3788 34 1 5.7247 -1.9452 2.1894 35 1 5.4721 -3.3286 1.0982 36 1 7.0072 -4.9156 -2.6830 37 1 7.6671 -3.1561 3.2384 38 1 9.0976 -3.6449 2.1823 39 1 9.3058 -1.2548 1.3568 40 1 7.8754 -0.7648 2.4126 41 1 3.8192 0.3090 1.2957 42 1 3.7100 -1.2202 2.2005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401458761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:01 Heat of formation + Delta-G solvation = -2.304809 kcal Electronic energy + Delta-G solvation = -20422.550545 eV Core-core repulsion = 17597.117635 eV Total energy + Delta-G solvation = -2825.432910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.82474 -37.71704 -35.41134 -33.20772 -32.03222 -31.12470 -27.62895 -27.21847 -25.36826 -24.63829 -22.96373 -21.43942 -21.28123 -19.49259 -18.93727 -16.50385 -16.29295 -16.05148 -15.29656 -15.04225 -14.69184 -14.18032 -13.74398 -13.48205 -13.19665 -13.05464 -12.55453 -12.43866 -12.33025 -12.23297 -11.91648 -11.75635 -11.37721 -11.20946 -10.84991 -10.69142 -10.61304 -10.51485 -10.18408 -10.13235 -9.60125 -9.49602 -9.35007 -9.08132 -8.56852 -8.22466 -7.45829 -6.00569 -3.91683 3.33703 3.41163 3.45765 3.76923 4.41412 4.51047 4.78647 4.91265 4.96398 5.02396 5.13870 5.20128 5.41507 5.48426 5.52427 5.59500 5.64658 5.68896 5.73065 5.81830 5.84758 5.98330 6.00203 6.05554 6.08758 6.14313 6.19001 6.25588 6.41706 6.50986 6.52276 6.57986 6.70894 6.75924 7.00849 7.17690 7.25831 7.68355 7.79674 7.92508 8.61705 9.02264 9.67455 11.12563 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024339 B = 0.007778 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.129440 B = 3598.951549 C = 4066.474632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.084 3.916 3 H 0.054 0.946 4 C -0.149 4.149 5 C -0.111 4.111 6 C 0.045 3.955 7 H 0.087 0.913 8 N -0.497 5.497 9 C 0.026 3.974 10 C 0.078 3.922 11 C 0.021 3.979 12 C -0.464 4.464 13 H 0.072 0.928 14 C 0.093 3.907 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.306 1.306 19 H -0.269 1.269 20 C -0.212 4.212 21 C -0.193 4.193 22 C 0.031 3.969 23 O -0.382 6.382 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.013 0.987 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.017 0.983 35 H 0.067 0.933 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 8.659 4.621 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 H 0.072 0.928 4 C -0.187 4.187 5 C -0.149 4.149 6 C -0.065 4.065 7 H 0.105 0.895 8 N -0.220 5.220 9 C -0.122 4.122 10 C -0.048 4.048 11 C 0.019 3.981 12 C -0.501 4.501 13 H 0.090 0.910 14 C -0.110 4.110 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.200 1.200 18 H -0.235 1.235 19 H -0.196 1.196 20 C -0.250 4.250 21 C -0.230 4.230 22 C -0.047 4.047 23 O -0.300 6.300 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.179 8.307 4.117 14.523 hybrid contribution -0.806 -0.139 1.067 1.345 sum -11.985 8.168 5.185 15.403 Atomic orbital electron populations 1.21755 0.93417 1.02823 1.02064 1.22097 0.94689 0.94953 0.85638 0.92760 1.22244 0.96701 1.01768 0.97964 1.21601 0.93795 1.01043 0.98420 1.22495 0.89066 1.00579 0.94339 0.89473 1.61938 1.05369 1.07678 1.46974 1.22460 1.02556 0.89520 0.97666 1.22135 0.96818 0.95578 0.90313 1.19291 0.87912 0.98083 0.92764 1.20109 1.08140 1.22581 0.99235 0.90954 1.24776 0.96202 0.96147 0.93884 1.69927 1.41050 1.33473 1.08723 0.86999 0.83842 0.77522 0.79394 1.20042 1.23522 1.19604 1.23165 1.04909 0.97237 0.99713 1.22812 1.02788 0.91682 1.05723 1.23405 0.80897 1.00382 1.00049 1.87880 1.21101 1.78115 1.42946 0.92133 0.91228 0.91867 0.91135 0.90919 0.90176 0.91765 0.96880 0.89864 0.92330 0.96527 0.91525 0.92842 0.91757 0.89629 0.90025 0.91433 0.92822 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.56 37.16 0.36 -1.10 16 2 C 0.08 1.06 3.26 -26.68 -0.09 0.98 16 3 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 4 C -0.15 -1.94 5.42 -26.59 -0.14 -2.09 16 5 C -0.11 -1.75 5.37 -26.55 -0.14 -1.89 16 6 C 0.04 0.80 2.36 -67.57 -0.16 0.64 16 7 H 0.09 1.75 6.10 -51.93 -0.32 1.44 16 8 N -0.50 -10.02 4.23 -234.72 -0.99 -11.02 16 9 C 0.03 0.45 7.98 60.07 0.48 0.93 16 10 C 0.08 1.68 3.25 -3.82 -0.01 1.67 16 11 C 0.02 0.49 0.93 -155.66 -0.15 0.34 16 12 C -0.46 -12.88 9.31 -34.44 -0.32 -13.21 16 13 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 14 C 0.09 2.64 5.43 -17.82 -0.10 2.54 16 15 N -0.89 -27.16 13.96 55.43 0.77 -26.39 16 16 Si 0.89 22.28 24.06 -169.99 -4.09 18.19 16 17 H -0.27 -6.57 5.37 56.52 0.30 -6.27 16 18 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 19 H -0.27 -6.51 6.38 56.52 0.36 -6.15 16 20 C -0.21 -4.50 9.96 -26.69 -0.27 -4.76 16 21 C -0.19 -3.90 8.21 -26.69 -0.22 -4.12 16 22 C 0.03 0.49 5.37 37.21 0.20 0.69 16 23 O -0.38 -5.94 10.41 -35.23 -0.37 -6.30 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 0.94 6.44 -51.93 -0.33 0.61 16 31 H 0.01 0.20 6.55 -51.93 -0.34 -0.14 16 32 H 0.08 1.57 6.24 -51.93 -0.32 1.25 16 33 H 0.06 0.92 6.31 -51.93 -0.33 0.59 16 34 H 0.02 0.33 7.22 -51.93 -0.37 -0.05 16 35 H 0.07 1.54 2.20 -51.93 -0.11 1.42 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 40 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 41 H 0.05 0.79 6.32 -51.93 -0.33 0.46 16 42 H 0.09 1.39 7.20 -51.93 -0.37 1.02 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -29.81 308.32 -7.76 -37.58 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.18 Total: 2.68 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -0.56 Total: -19.38 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.22 Total: -37.40 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.37 Total: -6.30 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.09 Total: 18.19 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.81 -7.76 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401458761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.271 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds