Wall clock time and date at job start Mon Mar 30 2020 07:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.48239 * 2 1 4 4 C 1.53097 * 109.47621 * 239.96824 * 2 1 3 5 5 C 1.53175 * 109.15892 * 182.40952 * 4 2 1 6 6 C 1.53181 * 109.04071 * 56.97920 * 5 4 2 7 7 H 1.09001 * 109.52181 * 62.92481 * 6 5 4 8 8 N 1.46896 * 109.52674 * 183.04871 * 6 5 4 9 9 C 1.46904 * 110.99976 * 69.33828 * 8 6 5 10 10 C 1.46896 * 111.00158 * 193.29352 * 8 6 5 11 11 C 1.53007 * 109.47029 * 168.73346 * 10 8 6 12 12 C 1.50699 * 115.54889 * 302.97553 * 11 10 8 13 13 H 1.08000 * 119.99536 * 143.14001 * 12 11 10 14 14 C 1.37874 * 119.99877 * 323.13565 * 12 11 10 15 15 N 1.31525 * 119.99637 * 169.12416 * 14 12 11 16 16 Si 1.86793 * 120.00256 * 349.12902 * 14 12 11 17 17 H 1.48509 * 109.47232 * 95.42251 * 16 14 12 18 18 H 1.48504 * 109.47433 * 215.41702 * 16 14 12 19 19 H 1.48495 * 109.47333 * 335.41885 * 16 14 12 20 20 C 1.53000 * 117.49542 * 157.30573 * 11 10 8 21 21 C 1.52999 * 117.49559 * 88.64730 * 11 10 8 22 22 C 1.53092 * 109.16180 * 303.01906 * 6 5 4 23 23 O 1.42902 * 109.48115 * 120.02620 * 2 1 3 24 24 H 1.08999 * 109.46925 * 299.97752 * 1 2 3 25 25 H 1.08996 * 109.47147 * 59.97131 * 1 2 3 26 26 H 1.08997 * 109.47135 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.52128 * 302.30766 * 4 2 1 28 28 H 1.08994 * 109.52073 * 62.43986 * 4 2 1 29 29 H 1.09005 * 109.54133 * 176.84584 * 5 4 2 30 30 H 1.08999 * 109.54538 * 297.11250 * 5 4 2 31 31 H 1.08998 * 109.47119 * 66.66360 * 9 8 6 32 32 H 1.08996 * 109.47173 * 186.66223 * 9 8 6 33 33 H 1.08998 * 109.47039 * 306.66562 * 9 8 6 34 34 H 1.08999 * 109.47215 * 288.73098 * 10 8 6 35 35 H 1.08994 * 109.47398 * 48.73359 * 10 8 6 36 36 H 0.96997 * 119.99786 * 180.02562 * 15 14 12 37 37 H 1.08995 * 117.50146 * 0.02562 * 20 11 10 38 38 H 1.09001 * 117.49595 * 145.02159 * 20 11 10 39 39 H 1.09000 * 117.49458 * 214.97484 * 21 11 10 40 40 H 1.08998 * 117.50420 * 359.97438 * 21 11 10 41 41 H 1.08998 * 109.48306 * 297.62604 * 22 6 5 42 42 H 1.09003 * 109.47927 * 177.58709 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7224 -1.2496 5 6 3.5710 -0.7710 -1.2122 6 6 4.0176 -1.4601 0.0809 7 1 3.6613 -2.4902 0.0865 8 7 5.4842 -1.4476 0.1626 9 6 5.9877 -0.0853 0.3830 10 6 5.9610 -2.3608 1.2099 11 6 7.4755 -2.5368 1.0824 12 6 7.9612 -3.0401 -0.2525 13 1 8.8871 -2.6678 -0.6655 14 6 7.2237 -3.9759 -0.9462 15 7 7.5263 -4.2575 -2.1948 16 14 5.7949 -4.8437 -0.1129 17 1 4.5293 -4.1383 -0.4387 18 1 5.7181 -6.2461 -0.5953 19 1 6.0011 -4.8367 1.3576 20 6 8.2418 -2.9857 2.3282 21 6 8.3674 -1.5437 1.8301 22 6 3.4308 -0.7093 1.2790 23 8 2.0066 -0.6741 1.1664 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5143 -0.8897 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6442 -1.7376 -1.2708 28 1 1.7138 -0.1851 -2.1399 29 1 3.9390 -1.3329 -2.0707 30 1 3.9689 0.2434 -1.2409 31 1 5.6795 0.2608 1.3695 32 1 7.0759 -0.0857 0.3216 33 1 5.5810 0.5799 -0.3788 34 1 5.7247 -1.9452 2.1894 35 1 5.4721 -3.3286 1.0982 36 1 7.0072 -4.9156 -2.6830 37 1 7.6671 -3.1561 3.2384 38 1 9.0976 -3.6449 2.1823 39 1 9.3058 -1.2548 1.3568 40 1 7.8754 -0.7648 2.4126 41 1 3.8192 0.3090 1.2957 42 1 3.7100 -1.2202 2.2005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401458761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:00 Heat of formation + Delta-G solvation = -22.411399 kcal Electronic energy + Delta-G solvation = -20423.422432 eV Core-core repulsion = 17597.117635 eV Total energy + Delta-G solvation = -2826.304797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08273 -39.24052 -36.91023 -34.30279 -34.19341 -32.30378 -29.23105 -28.36140 -27.31447 -25.95715 -24.21528 -23.05363 -22.46810 -20.89629 -20.71794 -18.24806 -17.77040 -17.43648 -16.86835 -16.40677 -15.87458 -15.61630 -15.28207 -15.08880 -14.71266 -14.56921 -14.15051 -13.66054 -13.54175 -13.34288 -13.24695 -13.07606 -12.95839 -12.61147 -12.41512 -12.19778 -12.06059 -11.92159 -11.79852 -11.42758 -11.30693 -11.27418 -10.98622 -10.59614 -10.42305 -10.22619 -8.88838 -8.21616 -6.14681 1.32343 1.38195 1.44910 2.40771 2.64298 2.92711 3.18385 3.55839 3.71722 3.78039 3.83795 3.99583 4.11960 4.17449 4.18838 4.30524 4.37831 4.46591 4.50674 4.54574 4.58242 4.67513 4.71662 4.80840 4.84748 4.86173 4.91889 4.99758 5.01998 5.07405 5.16711 5.26350 5.28940 5.30062 5.34485 5.52681 5.78456 6.12200 6.26709 6.38027 6.44212 6.82144 7.47252 8.95505 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024339 B = 0.007778 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.129440 B = 3598.951549 C = 4066.474632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 H 0.069 0.931 4 C -0.143 4.143 5 C -0.109 4.109 6 C 0.045 3.955 7 H 0.058 0.942 8 N -0.526 5.526 9 C 0.029 3.971 10 C 0.084 3.916 11 C -0.012 4.012 12 C -0.460 4.460 13 H 0.027 0.973 14 C 0.043 3.957 15 N -0.946 5.946 16 Si 0.946 3.054 17 H -0.264 1.264 18 H -0.318 1.318 19 H -0.251 1.251 20 C -0.204 4.204 21 C -0.167 4.167 22 C 0.041 3.959 23 O -0.397 6.397 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.260 0.740 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.172 10.504 6.673 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.021 3.979 3 H 0.087 0.913 4 C -0.181 4.181 5 C -0.147 4.147 6 C -0.064 4.064 7 H 0.076 0.924 8 N -0.250 5.250 9 C -0.118 4.118 10 C -0.043 4.043 11 C -0.013 4.013 12 C -0.498 4.498 13 H 0.045 0.955 14 C -0.155 4.155 15 N -0.586 5.586 16 Si 0.777 3.223 17 H -0.191 1.191 18 H -0.247 1.247 19 H -0.177 1.177 20 C -0.242 4.242 21 C -0.205 4.205 22 C -0.037 4.037 23 O -0.315 6.315 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.162 10.175 6.198 17.754 hybrid contribution -0.095 -0.639 0.389 0.754 sum -13.258 9.536 6.588 17.610 Atomic orbital electron populations 1.21771 0.91479 1.02872 1.03555 1.22351 0.96220 0.95146 0.84199 0.91335 1.22230 0.94480 1.01735 0.99648 1.21584 0.95847 1.00944 0.96334 1.22459 0.87859 0.99620 0.96499 0.92350 1.61858 1.06970 1.08962 1.47215 1.22432 1.01331 0.88459 0.99578 1.21958 0.94850 0.95398 0.92049 1.19255 0.89839 1.00957 0.91241 1.20255 1.06305 1.21884 1.01307 0.95484 1.25447 0.98895 0.96991 0.94184 1.70066 1.43007 1.34971 1.10554 0.86088 0.81263 0.75574 0.79329 1.19065 1.24747 1.17691 1.23171 1.04040 0.97763 0.99215 1.22815 1.01574 0.91970 1.04103 1.23237 0.81214 1.00683 0.98587 1.87877 1.20711 1.78700 1.44234 0.91549 0.88863 0.92559 0.92315 0.88400 0.92936 0.90450 0.94397 0.91787 0.90914 0.93901 0.93323 0.93064 0.89015 0.90696 0.90871 0.88205 0.91233 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.56 71.98 0.69 -1.69 16 2 C 0.08 1.73 3.26 30.63 0.10 1.83 16 3 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.14 -3.41 5.42 30.69 0.17 -3.25 16 5 C -0.11 -3.30 5.37 30.71 0.16 -3.13 16 6 C 0.04 1.53 2.36 45.01 0.11 1.64 16 7 H 0.06 2.32 6.10 -2.39 -0.01 2.30 16 8 N -0.53 -20.50 4.23 -896.52 -3.79 -24.29 16 9 C 0.03 0.95 7.98 127.69 1.02 1.97 16 10 C 0.08 3.45 3.25 86.31 0.28 3.73 16 11 C -0.01 -0.53 0.93 -52.93 -0.05 -0.58 16 12 C -0.46 -26.23 9.31 25.60 0.24 -26.00 16 13 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 14 C 0.04 2.49 5.43 84.65 0.46 2.95 16 15 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 16 Si 0.95 46.96 24.06 68.60 1.65 48.61 16 17 H -0.26 -12.59 5.37 99.48 0.53 -12.05 16 18 H -0.32 -16.14 7.11 99.48 0.71 -15.43 16 19 H -0.25 -11.59 6.38 99.48 0.63 -10.96 16 20 C -0.20 -8.15 9.96 30.62 0.30 -7.84 16 21 C -0.17 -6.38 8.21 30.62 0.25 -6.13 16 22 C 0.04 1.18 5.37 72.01 0.39 1.56 16 23 O -0.40 -11.21 10.41 -148.98 -1.55 -12.76 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.08 2.09 6.44 -2.39 -0.02 2.08 16 31 H 0.04 1.03 6.55 -2.39 -0.02 1.02 16 32 H 0.06 2.31 6.24 -2.39 -0.01 2.29 16 33 H 0.07 2.10 6.31 -2.39 -0.02 2.09 16 34 H 0.04 1.52 7.22 -2.39 -0.02 1.50 16 35 H 0.05 2.16 2.20 -2.39 -0.01 2.16 16 36 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.07 3.13 8.14 -2.39 -0.02 3.12 16 39 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.10 3.18 8.05 -2.39 -0.02 3.16 16 41 H 0.07 1.76 6.32 -2.39 -0.02 1.74 16 42 H 0.09 2.45 7.20 -2.39 -0.02 2.43 16 Total: -1.00 -66.69 308.32 1.46 -65.23 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.74 Total: 17.81 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 4.12 Total: -34.94 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -3.49 Total: -83.95 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -1.55 Total: -12.76 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.65 Total: 48.61 kcal Total: -66.69 1.46 -65.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401458761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.819 kcal (2) G-P(sol) polarization free energy of solvation -66.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds