Wall clock time and date at job start Mon Mar 30 2020 07:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99949 * 2 1 4 4 N 1.46905 * 109.46602 * 123.68219 * 3 2 1 5 5 C 1.46901 * 110.99528 * 164.06121 * 4 3 2 6 6 C 1.50703 * 109.47130 * 283.76775 * 5 4 3 7 7 H 1.08003 * 120.00121 * 4.45383 * 6 5 4 8 8 C 1.37879 * 119.99815 * 184.45234 * 6 5 4 9 9 N 1.31510 * 120.00237 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99821 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46899 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46836 * 119.99940 * 10 8 6 13 13 H 1.48497 * 109.47301 * 240.00044 * 10 8 6 14 14 C 1.46892 * 111.00220 * 288.01540 * 4 3 2 15 15 C 1.53009 * 109.46868 * 163.55141 * 14 4 3 16 16 H 1.09002 * 109.54245 * 56.25753 * 15 14 4 17 17 C 1.53175 * 109.54232 * 295.99355 * 15 14 4 18 18 C 1.53095 * 109.16168 * 183.15361 * 17 15 14 19 19 O 1.42902 * 109.41565 * 57.60846 * 18 17 15 20 20 C 1.42908 * 114.09503 * 298.84304 * 19 18 17 21 21 H 1.09008 * 109.48763 * 181.14907 * 20 19 18 22 22 C 1.52999 * 109.48011 * 301.17220 * 20 19 18 23 23 C 1.53091 * 109.41779 * 61.15818 * 20 19 18 24 24 H 1.08005 * 120.00359 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00240 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.00338 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47235 * 3.69070 * 3 2 1 28 28 H 1.08992 * 109.47666 * 243.68690 * 3 2 1 29 29 H 1.09000 * 109.47256 * 43.76879 * 5 4 3 30 30 H 1.09004 * 109.47260 * 163.77094 * 5 4 3 31 31 H 0.97000 * 119.99905 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.47215 * 283.54853 * 14 4 3 33 33 H 1.09000 * 109.47463 * 43.55327 * 14 4 3 34 34 H 1.09000 * 109.52262 * 303.05555 * 17 15 14 35 35 H 1.08997 * 109.52387 * 63.24794 * 17 15 14 36 36 H 1.08997 * 109.47650 * 297.62687 * 18 17 15 37 37 H 1.09002 * 109.48077 * 177.58765 * 18 17 15 38 38 H 1.09004 * 109.47452 * 179.97438 * 22 20 19 39 39 H 1.09000 * 109.47519 * 299.94915 * 22 20 19 40 40 H 1.09007 * 109.47192 * 59.94843 * 22 20 19 41 41 H 1.08996 * 109.52215 * 182.48401 * 23 20 19 42 42 H 1.08998 * 109.51829 * 62.29659 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9735 1.3451 1.1526 5 6 3.9815 2.4013 0.9909 6 6 5.0292 1.9494 0.0064 7 1 4.9164 1.0061 -0.5073 8 6 6.1318 2.7403 -0.2385 9 7 6.2694 3.8887 0.3874 10 14 7.4308 2.1799 -1.4584 11 1 7.0440 0.8618 -2.0227 12 1 7.5413 3.1744 -2.5556 13 1 8.7394 2.0581 -0.7670 14 6 2.2278 1.5165 2.4065 15 6 3.1267 1.1486 3.5888 16 1 4.0342 1.7516 3.5582 17 6 3.4932 -0.3366 3.5111 18 6 4.3267 -0.7134 4.7387 19 8 3.5872 -0.4154 5.9246 20 6 3.2572 0.9670 6.0746 21 1 2.7145 1.1121 7.0087 22 6 4.5413 1.7986 6.0961 23 6 2.3808 1.4113 4.9006 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3570 2.1326 0.0662 28 1 2.6396 1.3921 -0.9211 29 1 3.5021 3.3076 0.6209 30 1 4.4513 2.6056 1.9531 31 1 7.0453 4.4449 0.2153 32 1 1.9098 2.5547 2.5011 33 1 1.3521 0.8674 2.4001 34 1 2.5830 -0.9359 3.4909 35 1 4.0726 -0.5220 2.6066 36 1 5.2554 -0.1429 4.7365 37 1 4.5543 -1.7790 4.7105 38 1 4.2895 2.8530 6.2100 39 1 5.1652 1.4821 6.9319 40 1 5.0841 1.6531 5.1620 41 1 2.1646 2.4758 4.9899 42 1 1.4481 0.8473 4.9086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428860880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:12 Heat of formation + Delta-G solvation = -38.154171 kcal Electronic energy + Delta-G solvation = -19831.901226 eV Core-core repulsion = 17004.913771 eV Total energy + Delta-G solvation = -2826.987455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.60895 -37.18781 -33.98455 -33.10625 -32.08989 -31.56241 -28.42506 -27.12514 -26.18009 -23.81295 -23.06480 -22.10930 -20.09848 -19.23374 -18.82232 -16.48001 -16.14455 -15.72842 -15.14856 -14.79572 -14.55345 -14.21330 -13.78852 -13.73933 -13.42317 -12.87327 -12.80529 -12.29241 -12.03358 -11.70891 -11.59651 -11.46607 -11.36660 -11.06232 -10.93854 -10.87859 -10.64161 -10.53421 -10.30502 -10.06312 -9.81538 -9.52799 -9.29997 -9.14535 -8.90187 -8.42911 -7.25424 -6.03722 -4.04620 2.65030 3.29386 3.37319 3.41972 4.09936 4.41440 4.81080 5.04767 5.13379 5.21219 5.28542 5.32586 5.42911 5.49717 5.58555 5.67869 5.73240 5.74995 5.84120 5.94285 5.96464 6.05822 6.15648 6.18961 6.27828 6.29939 6.39123 6.43659 6.49386 6.55049 6.77094 6.87216 6.98567 7.02492 7.29544 7.33499 7.49313 7.82146 8.11673 8.20736 8.53875 9.03630 9.59667 11.06690 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.007473 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.344808 B = 3746.119268 C = 4919.270767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.118 4.118 3 C 0.083 3.917 4 N -0.529 5.529 5 C 0.191 3.809 6 C -0.502 4.502 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.063 3.937 15 C -0.083 4.083 16 H 0.082 0.918 17 C -0.134 4.134 18 C 0.055 3.945 19 O -0.385 6.385 20 C 0.090 3.910 21 H 0.094 0.906 22 C -0.188 4.188 23 C -0.144 4.144 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.023 0.977 28 H 0.090 0.910 29 H -0.013 1.013 30 H 0.035 0.965 31 H 0.260 0.740 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.530 -5.735 7.496 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.136 4.136 3 C -0.045 4.045 4 N -0.253 5.253 5 C 0.066 3.934 6 C -0.541 4.541 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.065 4.065 15 C -0.102 4.102 16 H 0.100 0.900 17 C -0.172 4.172 18 C -0.022 4.022 19 O -0.304 6.304 20 C 0.032 3.968 21 H 0.112 0.888 22 C -0.246 4.246 23 C -0.182 4.182 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.127 0.873 27 H 0.041 0.959 28 H 0.108 0.892 29 H 0.005 0.995 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.198 -6.157 7.657 12.180 hybrid contribution 0.411 0.892 -0.934 1.355 sum -6.787 -5.265 6.723 10.908 Atomic orbital electron populations 1.23699 0.96030 1.00971 1.05150 1.23133 0.95249 0.99505 0.95726 1.21169 0.94251 0.92573 0.96499 1.62051 1.13508 1.50365 0.99379 1.19793 0.88953 0.87007 0.97638 1.21206 1.04771 1.05081 1.23029 0.91868 1.24980 0.98173 0.94980 0.96496 1.69962 1.29510 1.11739 1.42682 0.86493 0.81538 0.78702 0.81002 1.19666 1.21183 1.21077 1.22030 0.95692 0.97975 0.90823 1.21191 0.99335 0.97008 0.92631 0.90024 1.22035 1.00548 0.95860 0.98737 1.22661 0.94348 1.00448 0.84717 1.87905 1.74997 1.24884 1.42650 1.22084 0.94871 0.81799 0.98014 0.88826 1.22469 0.98604 1.00453 1.03025 1.22218 0.99146 1.01371 0.95473 0.89287 0.89146 0.87349 0.95883 0.89160 0.99513 0.94682 0.93050 0.96113 0.92187 0.92296 0.89125 0.92889 0.89561 0.91670 0.92349 0.91096 0.91411 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.04 14.32 29.02 0.42 -2.62 16 2 C -0.12 -1.87 8.77 -36.02 -0.32 -2.18 16 3 C 0.08 1.57 5.23 -4.97 -0.03 1.54 16 4 N -0.53 -10.88 3.80 -237.51 -0.90 -11.78 16 5 C 0.19 4.79 4.58 -4.97 -0.02 4.77 16 6 C -0.50 -13.69 8.57 -34.44 -0.30 -13.99 16 7 H 0.06 1.72 7.75 -52.48 -0.41 1.31 16 8 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 9 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 10 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.06 1.13 4.21 -3.82 -0.02 1.11 16 15 C -0.08 -1.37 1.97 -90.43 -0.18 -1.55 16 16 H 0.08 1.56 4.96 -51.93 -0.26 1.30 16 17 C -0.13 -2.13 5.26 -26.59 -0.14 -2.27 16 18 C 0.05 0.80 6.52 37.21 0.24 1.04 16 19 O -0.39 -5.81 10.60 -35.23 -0.37 -6.18 16 20 C 0.09 1.21 3.91 -26.68 -0.10 1.10 16 21 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 22 C -0.19 -2.50 8.65 37.16 0.32 -2.18 16 23 C -0.14 -2.01 4.93 -26.59 -0.13 -2.14 16 24 H 0.09 1.19 7.84 -52.48 -0.41 0.78 16 25 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 26 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.02 0.43 7.70 -51.93 -0.40 0.03 16 28 H 0.09 1.86 7.32 -51.93 -0.38 1.48 16 29 H -0.01 -0.35 7.99 -51.93 -0.42 -0.77 16 30 H 0.04 0.94 6.24 -51.93 -0.32 0.61 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 33 H 0.06 1.00 7.17 -51.93 -0.37 0.63 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.62 7.83 -51.93 -0.41 1.22 16 36 H 0.05 0.80 6.34 -51.93 -0.33 0.47 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.07 4.98 -51.93 -0.26 0.82 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -28.44 326.48 -8.31 -36.75 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.32 Total: 1.36 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.35 Total: -15.95 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.17 Total: -37.25 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.37 Total: -6.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.44 -8.31 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428860880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.406 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds