Wall clock time and date at job start Mon Mar 30 2020 07:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99949 * 2 1 4 4 N 1.46905 * 109.46602 * 123.68219 * 3 2 1 5 5 C 1.46901 * 110.99528 * 164.06121 * 4 3 2 6 6 C 1.50703 * 109.47130 * 283.76775 * 5 4 3 7 7 H 1.08003 * 120.00121 * 4.45383 * 6 5 4 8 8 C 1.37879 * 119.99815 * 184.45234 * 6 5 4 9 9 N 1.31510 * 120.00237 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99821 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46899 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46836 * 119.99940 * 10 8 6 13 13 H 1.48497 * 109.47301 * 240.00044 * 10 8 6 14 14 C 1.46892 * 111.00220 * 288.01540 * 4 3 2 15 15 C 1.53009 * 109.46868 * 163.55141 * 14 4 3 16 16 H 1.09002 * 109.54245 * 56.25753 * 15 14 4 17 17 C 1.53175 * 109.54232 * 295.99355 * 15 14 4 18 18 C 1.53095 * 109.16168 * 183.15361 * 17 15 14 19 19 O 1.42902 * 109.41565 * 57.60846 * 18 17 15 20 20 C 1.42908 * 114.09503 * 298.84304 * 19 18 17 21 21 H 1.09008 * 109.48763 * 181.14907 * 20 19 18 22 22 C 1.52999 * 109.48011 * 301.17220 * 20 19 18 23 23 C 1.53091 * 109.41779 * 61.15818 * 20 19 18 24 24 H 1.08005 * 120.00359 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00240 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.00338 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47235 * 3.69070 * 3 2 1 28 28 H 1.08992 * 109.47666 * 243.68690 * 3 2 1 29 29 H 1.09000 * 109.47256 * 43.76879 * 5 4 3 30 30 H 1.09004 * 109.47260 * 163.77094 * 5 4 3 31 31 H 0.97000 * 119.99905 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.47215 * 283.54853 * 14 4 3 33 33 H 1.09000 * 109.47463 * 43.55327 * 14 4 3 34 34 H 1.09000 * 109.52262 * 303.05555 * 17 15 14 35 35 H 1.08997 * 109.52387 * 63.24794 * 17 15 14 36 36 H 1.08997 * 109.47650 * 297.62687 * 18 17 15 37 37 H 1.09002 * 109.48077 * 177.58765 * 18 17 15 38 38 H 1.09004 * 109.47452 * 179.97438 * 22 20 19 39 39 H 1.09000 * 109.47519 * 299.94915 * 22 20 19 40 40 H 1.09007 * 109.47192 * 59.94843 * 22 20 19 41 41 H 1.08996 * 109.52215 * 182.48401 * 23 20 19 42 42 H 1.08998 * 109.51829 * 62.29659 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9735 1.3451 1.1526 5 6 3.9815 2.4013 0.9909 6 6 5.0292 1.9494 0.0064 7 1 4.9164 1.0061 -0.5073 8 6 6.1318 2.7403 -0.2385 9 7 6.2694 3.8887 0.3874 10 14 7.4308 2.1799 -1.4584 11 1 7.0440 0.8618 -2.0227 12 1 7.5413 3.1744 -2.5556 13 1 8.7394 2.0581 -0.7670 14 6 2.2278 1.5165 2.4065 15 6 3.1267 1.1486 3.5888 16 1 4.0342 1.7516 3.5582 17 6 3.4932 -0.3366 3.5111 18 6 4.3267 -0.7134 4.7387 19 8 3.5872 -0.4154 5.9246 20 6 3.2572 0.9670 6.0746 21 1 2.7145 1.1121 7.0087 22 6 4.5413 1.7986 6.0961 23 6 2.3808 1.4113 4.9006 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3570 2.1326 0.0662 28 1 2.6396 1.3921 -0.9211 29 1 3.5021 3.3076 0.6209 30 1 4.4513 2.6056 1.9531 31 1 7.0453 4.4449 0.2153 32 1 1.9098 2.5547 2.5011 33 1 1.3521 0.8674 2.4001 34 1 2.5830 -0.9359 3.4909 35 1 4.0726 -0.5220 2.6066 36 1 5.2554 -0.1429 4.7365 37 1 4.5543 -1.7790 4.7105 38 1 4.2895 2.8530 6.2100 39 1 5.1652 1.4821 6.9319 40 1 5.0841 1.6531 5.1620 41 1 2.1646 2.4758 4.9899 42 1 1.4481 0.8473 4.9086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428860880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:12 Heat of formation + Delta-G solvation = -54.743010 kcal Electronic energy + Delta-G solvation = -19832.620572 eV Core-core repulsion = 17004.913771 eV Total energy + Delta-G solvation = -2827.706801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83555 -38.73469 -35.26020 -35.02271 -33.51139 -32.91055 -29.82153 -28.91281 -27.50335 -25.55096 -24.29867 -23.66591 -21.61042 -20.54944 -20.07671 -18.55688 -17.36336 -16.96565 -16.66876 -16.57151 -15.93309 -15.49055 -15.37459 -15.11935 -14.81998 -14.32462 -14.06525 -13.99514 -13.42080 -13.21415 -13.13460 -12.89051 -12.71739 -12.66697 -12.55785 -12.38014 -12.11387 -12.06614 -11.87365 -11.38744 -11.34706 -11.29011 -10.87627 -10.59015 -10.34982 -10.17570 -8.98456 -8.18856 -6.27959 1.39207 1.40211 1.44440 1.53451 2.40161 2.98297 3.12409 3.33773 3.81791 3.90777 3.96886 4.12929 4.18952 4.23513 4.31604 4.45401 4.48325 4.55311 4.61798 4.68173 4.71686 4.76263 4.86390 4.91188 4.95575 5.04239 5.09016 5.11723 5.21110 5.25392 5.25546 5.33113 5.45497 5.55732 5.67651 5.77257 5.89884 6.11348 6.34227 6.42010 6.66987 6.87901 7.41273 8.91471 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.007473 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.344808 B = 3746.119268 C = 4919.270767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.141 4.141 3 C 0.085 3.915 4 N -0.531 5.531 5 C 0.210 3.790 6 C -0.514 4.514 7 H 0.060 0.940 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.279 1.279 14 C 0.067 3.933 15 C -0.081 4.081 16 H 0.048 0.952 17 C -0.126 4.126 18 C 0.058 3.942 19 O -0.390 6.390 20 C 0.088 3.912 21 H 0.122 0.878 22 C -0.186 4.186 23 C -0.137 4.137 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.023 0.977 28 H 0.063 0.937 29 H -0.046 1.046 30 H 0.012 0.988 31 H 0.263 0.737 32 H 0.011 0.989 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 -7.239 7.992 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.160 4.160 3 C -0.043 4.043 4 N -0.254 5.254 5 C 0.083 3.917 6 C -0.553 4.553 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.205 1.205 14 C -0.061 4.061 15 C -0.100 4.100 16 H 0.067 0.933 17 C -0.164 4.164 18 C -0.018 4.018 19 O -0.310 6.310 20 C 0.031 3.969 21 H 0.139 0.861 22 C -0.243 4.243 23 C -0.175 4.175 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.128 0.872 27 H 0.041 0.959 28 H 0.082 0.918 29 H -0.028 1.028 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.420 -7.674 8.156 14.011 hybrid contribution 0.686 1.387 -1.081 1.888 sum -7.733 -6.287 7.075 12.222 Atomic orbital electron populations 1.23942 0.95031 1.02574 1.00867 1.22840 0.95913 0.97633 0.99588 1.21129 0.93762 0.94758 0.94628 1.62009 1.14069 1.48067 1.01285 1.19400 0.89604 0.86960 0.95694 1.21475 1.05522 1.04921 1.23378 0.92208 1.25845 1.00398 0.94974 0.98301 1.70083 1.30337 1.12889 1.44148 0.85423 0.78618 0.78527 0.78600 1.18827 1.20576 1.20495 1.22089 0.96244 0.97873 0.89922 1.21125 0.98098 0.96990 0.93751 0.93330 1.21924 1.00761 0.95398 0.98333 1.22630 0.93621 1.01409 0.84152 1.87901 1.74902 1.25760 1.42394 1.22260 0.94791 0.81025 0.98829 0.86079 1.22444 0.98722 1.01138 1.02014 1.22180 0.99298 1.02116 0.93939 0.88693 0.86322 0.87207 0.95878 0.91843 1.02799 0.96975 0.92846 0.97035 0.90180 0.91249 0.91681 0.93915 0.87697 0.90886 0.91288 0.93727 0.90740 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.55 14.32 67.78 0.97 -3.57 16 2 C -0.14 -4.30 8.77 25.65 0.22 -4.07 16 3 C 0.08 3.26 5.23 85.56 0.45 3.71 16 4 N -0.53 -22.52 3.80 -905.34 -3.44 -25.96 16 5 C 0.21 11.08 4.58 85.56 0.39 11.47 16 6 C -0.51 -29.08 8.57 25.60 0.22 -28.86 16 7 H 0.06 3.35 7.75 -2.91 -0.02 3.33 16 8 C 0.00 0.15 5.46 84.66 0.46 0.61 16 9 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 10 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 C 0.07 2.39 4.21 86.31 0.36 2.76 16 15 C -0.08 -2.70 1.97 -10.67 -0.02 -2.72 16 16 H 0.05 1.96 4.96 -2.39 -0.01 1.95 16 17 C -0.13 -3.99 5.26 30.68 0.16 -3.82 16 18 C 0.06 1.66 6.52 72.01 0.47 2.13 16 19 O -0.39 -11.00 10.60 -148.98 -1.58 -12.58 16 20 C 0.09 2.20 3.91 30.62 0.12 2.32 16 21 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 22 C -0.19 -4.83 8.65 71.98 0.62 -4.21 16 23 C -0.14 -3.62 4.93 30.68 0.15 -3.47 16 24 H 0.09 2.23 7.84 -2.91 -0.02 2.21 16 25 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 26 H 0.11 3.32 8.06 -2.91 -0.02 3.30 16 27 H 0.02 0.87 7.70 -2.39 -0.02 0.85 16 28 H 0.06 2.73 7.32 -2.39 -0.02 2.72 16 29 H -0.05 -2.65 7.99 -2.39 -0.02 -2.67 16 30 H 0.01 0.69 6.24 -2.38 -0.01 0.68 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.01 0.43 8.05 -2.39 -0.02 0.41 16 33 H 0.08 2.55 7.17 -2.39 -0.02 2.53 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 2.38 7.83 -2.39 -0.02 2.36 16 36 H 0.04 1.30 6.34 -2.39 -0.02 1.29 16 37 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.04 1.39 4.98 -2.38 -0.01 1.38 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -62.53 326.48 2.84 -59.69 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.96 Total: 15.86 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 4.58 Total: -27.73 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -3.15 Total: -81.75 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.58 Total: -12.58 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.53 2.84 -59.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428860880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.951 kcal (2) G-P(sol) polarization free energy of solvation -62.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds