Wall clock time and date at job start Mon Mar 30 2020 07:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.89692 * 2 1 4 4 C 1.54380 * 109.83082 * 239.06985 * 2 1 3 5 5 C 1.55312 * 102.25123 * 219.12767 * 4 2 1 6 6 H 1.08998 * 111.12367 * 276.16857 * 5 4 2 7 7 N 1.46903 * 111.12208 * 152.05006 * 5 4 2 8 8 C 1.46893 * 111.00073 * 86.45825 * 7 5 4 9 9 H 1.09006 * 110.43247 * 323.90504 * 8 7 5 10 10 C 1.54265 * 110.48988 * 86.44628 * 8 7 5 11 11 C 1.53878 * 106.59553 * 142.42203 * 10 8 7 12 12 C 1.54267 * 106.60288 * 0.02562 * 11 10 8 13 13 H 1.08999 * 110.48440 * 95.19791 * 12 11 10 14 14 C 1.50695 * 110.49017 * 217.71509 * 12 11 10 15 15 H 1.07995 * 120.00496 * 116.75824 * 14 12 11 16 16 C 1.37880 * 119.99572 * 296.75758 * 14 12 11 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 C 1.54893 * 104.30913 * 336.45800 * 12 11 10 23 23 C 1.54945 * 100.93875 * 34.13217 * 5 4 2 24 24 H 1.09006 * 110.31036 * 82.47508 * 23 5 4 25 25 C 1.53004 * 110.30705 * 204.63733 * 23 5 4 26 26 O 1.43241 * 109.83287 * 120.93181 * 2 1 3 27 27 H 1.08997 * 109.47253 * 180.93341 * 1 2 3 28 28 H 1.09003 * 109.47452 * 300.93439 * 1 2 3 29 29 H 1.09004 * 109.47324 * 60.93085 * 1 2 3 30 30 H 1.09001 * 110.85145 * 100.93753 * 4 2 1 31 31 H 1.09002 * 111.01923 * 337.39199 * 4 2 1 32 32 H 1.00900 * 110.99465 * 210.40709 * 7 5 4 33 33 H 1.09004 * 110.03116 * 23.14144 * 10 8 7 34 34 H 1.08992 * 110.03842 * 261.70683 * 10 8 7 35 35 H 1.09004 * 110.03132 * 240.71428 * 11 10 8 36 36 H 1.09002 * 110.03367 * 119.29187 * 11 10 8 37 37 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 38 38 H 1.09006 * 110.75246 * 156.18557 * 22 12 11 39 39 H 1.08994 * 110.75434 * 279.55728 * 22 12 11 40 40 H 1.09004 * 109.46718 * 60.00002 * 25 23 5 41 41 H 1.09001 * 109.47250 * 179.97438 * 25 23 5 42 42 H 1.08994 * 109.47144 * 300.00317 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0536 -0.7464 -1.2457 5 6 3.2730 -1.5221 -0.6768 6 1 4.1622 -0.8922 -0.6514 7 7 3.5212 -2.7522 -1.4405 8 6 4.3755 -2.4853 -2.6053 9 1 4.1428 -1.5097 -3.0324 10 6 5.8650 -2.5607 -2.2112 11 6 6.6006 -3.2119 -3.3955 12 6 5.5325 -3.5088 -4.4683 13 1 5.4887 -2.6996 -5.1972 14 6 5.8232 -4.8191 -5.1536 15 1 5.1248 -5.6387 -5.0704 16 6 6.9809 -4.9717 -5.8867 17 7 7.8317 -3.9739 -5.9876 18 14 7.3410 -6.5956 -6.7368 19 1 6.2588 -6.8965 -7.7082 20 1 7.4123 -7.6793 -5.7240 21 1 8.6377 -6.5019 -7.4544 22 6 4.2057 -3.5952 -3.6739 23 6 2.7747 -1.8444 0.7545 24 1 2.1401 -2.7306 0.7436 25 6 3.9626 -2.0522 1.6962 26 8 2.0159 -0.6926 1.1558 27 1 -0.3633 -1.0275 0.0167 28 1 -0.3634 0.5283 0.8815 29 1 -0.3634 0.4993 -0.8982 30 1 2.3671 -0.0424 -2.0166 31 1 1.3027 -1.4348 -1.6335 32 1 3.9236 -3.4673 -0.8533 33 1 5.9840 -3.1716 -1.3163 34 1 6.2557 -1.5587 -2.0344 35 1 7.0766 -4.1388 -3.0754 36 1 7.3484 -2.5258 -3.7935 37 1 7.6445 -3.1304 -5.5465 38 1 3.3538 -3.3849 -4.3207 39 1 4.1014 -4.5718 -3.2012 40 1 4.5660 -1.1449 1.7254 41 1 3.5970 -2.2773 2.6981 42 1 4.5709 -2.8817 1.3360 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:49 Heat of formation + Delta-G solvation = -74.275992 kcal Electronic energy + Delta-G solvation = -19422.146331 eV Core-core repulsion = 16593.592516 eV Total energy + Delta-G solvation = -2828.553815 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -39.98464 -37.82108 -34.65157 -32.84342 -32.32029 -30.23812 -28.45789 -28.12129 -26.00183 -23.83649 -23.29706 -21.25422 -20.75513 -19.57675 -19.19804 -17.12379 -16.70614 -16.14749 -15.21977 -14.74839 -14.29452 -14.13904 -13.79051 -13.70574 -13.12026 -13.04860 -12.82137 -12.52658 -12.28090 -12.07400 -11.99386 -11.90162 -11.40162 -11.12257 -10.92777 -10.81408 -10.67193 -10.58679 -10.33327 -10.06694 -9.98339 -9.75376 -9.61783 -9.32606 -8.43764 -8.31765 -8.16725 -6.29624 -4.01422 3.45330 3.46647 3.57894 3.65396 4.21319 4.48581 4.56261 4.60716 4.88248 5.05075 5.09240 5.19912 5.23195 5.32678 5.37026 5.43549 5.48309 5.57084 5.62592 5.67042 5.71792 5.86161 5.92134 5.95592 6.00696 6.07967 6.18709 6.32010 6.46499 6.56025 6.65333 6.83888 6.90030 6.98354 7.09346 7.35855 7.37980 7.55233 7.72188 8.30517 8.48570 8.93586 9.70573 11.08372 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.042636 B = 0.004197 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.567929 B = 6669.638804 C = 6881.806621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.077 3.923 3 H 0.076 0.924 4 C -0.142 4.142 5 C 0.056 3.944 6 H 0.059 0.941 7 N -0.668 5.668 8 C 0.081 3.919 9 H 0.072 0.928 10 C -0.149 4.149 11 C -0.110 4.110 12 C 0.031 3.969 13 H 0.019 0.981 14 C -0.592 4.592 15 H 0.048 0.952 16 C 0.018 3.982 17 N -0.915 5.915 18 Si 1.066 2.934 19 H -0.289 1.289 20 H -0.289 1.289 21 H -0.284 1.284 22 C -0.091 4.091 23 C 0.077 3.923 24 H 0.078 0.922 25 C -0.153 4.153 26 O -0.377 6.377 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.341 0.659 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.271 0.729 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.183 6.511 12.615 17.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 H 0.094 0.906 4 C -0.180 4.180 5 C -0.055 4.055 6 H 0.077 0.923 7 N -0.300 5.300 8 C -0.028 4.028 9 H 0.090 0.910 10 C -0.189 4.189 11 C -0.149 4.149 12 C 0.012 3.988 13 H 0.037 0.963 14 C -0.630 4.630 15 H 0.067 0.933 16 C -0.186 4.186 17 N -0.552 5.552 18 Si 0.894 3.106 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.209 1.209 22 C -0.129 4.129 23 C 0.019 3.981 24 H 0.096 0.904 25 C -0.210 4.210 26 O -0.296 6.296 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.160 0.840 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.703 5.842 11.527 16.160 hybrid contribution -0.147 0.946 1.190 1.527 sum -9.850 6.788 12.717 17.459 Atomic orbital electron populations 1.22121 0.94946 1.02651 1.02023 1.22670 0.94308 0.96056 0.85095 0.90615 1.23206 0.98247 0.99294 0.97249 1.23202 0.97276 0.92797 0.92237 0.92278 1.60625 1.51640 1.07726 1.10008 1.22617 0.89604 0.99780 0.90819 0.90983 1.22888 0.97028 0.99444 0.99511 1.22313 0.98727 0.98982 0.94845 1.19610 0.89682 0.97165 0.92335 0.96337 1.21986 1.08289 0.98358 1.34372 0.93322 1.25768 0.93005 1.03874 0.95943 1.70794 1.37249 1.04225 1.42922 0.83591 0.76165 0.74552 0.76260 1.21514 1.21543 1.20901 1.22424 0.98795 0.96554 0.95144 1.23011 0.92709 0.89540 0.92798 0.90431 1.21919 0.97001 1.02322 0.99757 1.88417 1.70579 1.40449 1.30196 0.92076 0.92217 0.91551 0.90564 0.89301 0.83954 0.93092 0.93634 0.92415 0.93632 0.91700 0.93164 0.92076 0.92028 0.91782 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.44 37.15 0.35 -1.15 16 2 C 0.08 0.84 4.16 -26.01 -0.11 0.73 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.14 -1.67 6.13 -24.78 -0.15 -1.82 16 5 C 0.06 0.71 2.61 -65.46 -0.17 0.53 16 6 H 0.06 0.79 7.80 -51.93 -0.40 0.39 16 7 N -0.67 -9.62 6.23 -95.60 -0.60 -10.21 16 8 C 0.08 1.39 3.03 -66.00 -0.20 1.19 16 9 H 0.07 1.23 7.85 -51.93 -0.41 0.83 16 10 C -0.15 -2.67 6.36 -25.61 -0.16 -2.83 16 11 C -0.11 -2.49 5.37 -25.61 -0.14 -2.62 16 12 C 0.03 0.76 2.41 -90.11 -0.22 0.55 16 13 H 0.02 0.49 8.00 -51.93 -0.42 0.08 16 14 C -0.59 -16.47 8.38 -34.44 -0.29 -16.76 16 15 H 0.05 1.35 7.77 -52.49 -0.41 0.94 16 16 C 0.02 0.51 5.34 -17.82 -0.10 0.42 16 17 N -0.92 -27.37 13.44 55.43 0.74 -26.62 16 18 Si 1.07 25.12 29.90 -169.99 -5.08 20.04 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.09 -1.87 5.99 -24.67 -0.15 -2.02 16 23 C 0.08 0.92 3.56 -25.70 -0.09 0.83 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 C -0.15 -1.60 9.62 37.16 0.36 -1.24 16 26 O -0.38 -4.83 10.70 -35.23 -0.38 -5.21 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.10 7.86 -51.93 -0.41 0.69 16 32 H 0.34 4.72 7.80 -39.29 -0.31 4.41 16 33 H 0.05 0.85 7.58 -51.93 -0.39 0.45 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.41 7.83 -51.93 -0.41 1.01 16 36 H 0.04 1.07 6.91 -51.93 -0.36 0.71 16 37 H 0.27 8.01 5.54 -40.82 -0.23 7.78 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.29 8.05 -51.93 -0.42 0.87 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.69 7.98 -51.93 -0.41 0.27 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -29.31 326.36 -9.05 -38.36 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.59 Total: 2.94 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -1.06 Total: -24.20 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.15 Total: -36.83 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.38 Total: -5.21 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.31 -9.05 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.919 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds