Wall clock time and date at job start Mon Mar 30 2020 07:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.89692 * 2 1 4 4 C 1.54380 * 109.83082 * 239.06985 * 2 1 3 5 5 C 1.55312 * 102.25123 * 219.12767 * 4 2 1 6 6 H 1.08998 * 111.12367 * 276.16857 * 5 4 2 7 7 N 1.46903 * 111.12208 * 152.05006 * 5 4 2 8 8 C 1.46893 * 111.00073 * 86.45825 * 7 5 4 9 9 H 1.09006 * 110.43247 * 323.90504 * 8 7 5 10 10 C 1.54265 * 110.48988 * 86.44628 * 8 7 5 11 11 C 1.53878 * 106.59553 * 142.42203 * 10 8 7 12 12 C 1.54267 * 106.60288 * 0.02562 * 11 10 8 13 13 H 1.08999 * 110.48440 * 95.19791 * 12 11 10 14 14 C 1.50695 * 110.49017 * 217.71509 * 12 11 10 15 15 H 1.07995 * 120.00496 * 116.75824 * 14 12 11 16 16 C 1.37880 * 119.99572 * 296.75758 * 14 12 11 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 C 1.54893 * 104.30913 * 336.45800 * 12 11 10 23 23 C 1.54945 * 100.93875 * 34.13217 * 5 4 2 24 24 H 1.09006 * 110.31036 * 82.47508 * 23 5 4 25 25 C 1.53004 * 110.30705 * 204.63733 * 23 5 4 26 26 O 1.43241 * 109.83287 * 120.93181 * 2 1 3 27 27 H 1.08997 * 109.47253 * 180.93341 * 1 2 3 28 28 H 1.09003 * 109.47452 * 300.93439 * 1 2 3 29 29 H 1.09004 * 109.47324 * 60.93085 * 1 2 3 30 30 H 1.09001 * 110.85145 * 100.93753 * 4 2 1 31 31 H 1.09002 * 111.01923 * 337.39199 * 4 2 1 32 32 H 1.00900 * 110.99465 * 210.40709 * 7 5 4 33 33 H 1.09004 * 110.03116 * 23.14144 * 10 8 7 34 34 H 1.08992 * 110.03842 * 261.70683 * 10 8 7 35 35 H 1.09004 * 110.03132 * 240.71428 * 11 10 8 36 36 H 1.09002 * 110.03367 * 119.29187 * 11 10 8 37 37 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 38 38 H 1.09006 * 110.75246 * 156.18557 * 22 12 11 39 39 H 1.08994 * 110.75434 * 279.55728 * 22 12 11 40 40 H 1.09004 * 109.46718 * 60.00002 * 25 23 5 41 41 H 1.09001 * 109.47250 * 179.97438 * 25 23 5 42 42 H 1.08994 * 109.47144 * 300.00317 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0536 -0.7464 -1.2457 5 6 3.2730 -1.5221 -0.6768 6 1 4.1622 -0.8922 -0.6514 7 7 3.5212 -2.7522 -1.4405 8 6 4.3755 -2.4853 -2.6053 9 1 4.1428 -1.5097 -3.0324 10 6 5.8650 -2.5607 -2.2112 11 6 6.6006 -3.2119 -3.3955 12 6 5.5325 -3.5088 -4.4683 13 1 5.4887 -2.6996 -5.1972 14 6 5.8232 -4.8191 -5.1536 15 1 5.1248 -5.6387 -5.0704 16 6 6.9809 -4.9717 -5.8867 17 7 7.8317 -3.9739 -5.9876 18 14 7.3410 -6.5956 -6.7368 19 1 6.2588 -6.8965 -7.7082 20 1 7.4123 -7.6793 -5.7240 21 1 8.6377 -6.5019 -7.4544 22 6 4.2057 -3.5952 -3.6739 23 6 2.7747 -1.8444 0.7545 24 1 2.1401 -2.7306 0.7436 25 6 3.9626 -2.0522 1.6962 26 8 2.0159 -0.6926 1.1558 27 1 -0.3633 -1.0275 0.0167 28 1 -0.3634 0.5283 0.8815 29 1 -0.3634 0.4993 -0.8982 30 1 2.3671 -0.0424 -2.0166 31 1 1.3027 -1.4348 -1.6335 32 1 3.9236 -3.4673 -0.8533 33 1 5.9840 -3.1716 -1.3163 34 1 6.2557 -1.5587 -2.0344 35 1 7.0766 -4.1388 -3.0754 36 1 7.3484 -2.5258 -3.7935 37 1 7.6445 -3.1304 -5.5465 38 1 3.3538 -3.3849 -4.3207 39 1 4.1014 -4.5718 -3.2012 40 1 4.5660 -1.1449 1.7254 41 1 3.5970 -2.2773 2.6981 42 1 4.5709 -2.8817 1.3360 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:45 Heat of formation + Delta-G solvation = -91.969185 kcal Electronic energy + Delta-G solvation = -19422.913565 eV Core-core repulsion = 16593.592516 eV Total energy + Delta-G solvation = -2829.321049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.97046 -39.36589 -36.13554 -34.17115 -33.61969 -31.43274 -29.89144 -29.39748 -27.56066 -25.63348 -24.42328 -22.23936 -21.83854 -21.10693 -20.87284 -18.86782 -17.98458 -17.22158 -16.46663 -16.19141 -15.67309 -15.50684 -15.17140 -14.89921 -14.59085 -14.18766 -13.94531 -13.80316 -13.67991 -13.32496 -13.07746 -12.81207 -12.76588 -12.66032 -12.41932 -12.13685 -12.02174 -11.92506 -11.70790 -11.67754 -11.56516 -11.51128 -11.16644 -10.53505 -10.49090 -10.43793 -9.41238 -8.55070 -6.28052 1.53682 1.61187 1.80247 2.59050 2.66648 3.09587 3.23074 3.54475 3.69573 3.86056 3.91805 4.00988 4.05956 4.14664 4.22492 4.36466 4.42594 4.52793 4.58774 4.67020 4.70324 4.77613 4.82847 4.85554 4.89291 4.98935 5.01654 5.04642 5.06806 5.15733 5.21620 5.21795 5.29452 5.35974 5.51178 5.72019 6.00160 6.11960 6.17895 6.27792 6.39358 6.71606 7.52094 8.83218 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.042636 B = 0.004197 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.567929 B = 6669.638804 C = 6881.806621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.074 3.926 3 H 0.085 0.915 4 C -0.140 4.140 5 C 0.056 3.944 6 H 0.058 0.942 7 N -0.665 5.665 8 C 0.100 3.900 9 H 0.076 0.924 10 C -0.138 4.138 11 C -0.101 4.101 12 C 0.019 3.981 13 H -0.008 1.008 14 C -0.607 4.607 15 H 0.044 0.956 16 C -0.032 4.032 17 N -0.941 5.941 18 Si 1.111 2.889 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.286 1.286 22 C -0.083 4.083 23 C 0.080 3.920 24 H 0.076 0.924 25 C -0.151 4.151 26 O -0.392 6.392 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.347 0.653 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 6.499 13.804 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.016 3.984 3 H 0.103 0.897 4 C -0.179 4.179 5 C -0.055 4.055 6 H 0.076 0.924 7 N -0.296 5.296 8 C -0.011 4.011 9 H 0.094 0.906 10 C -0.177 4.177 11 C -0.140 4.140 12 C 0.000 4.000 13 H 0.010 0.990 14 C -0.645 4.645 15 H 0.062 0.938 16 C -0.230 4.230 17 N -0.579 5.579 18 Si 0.933 3.067 19 H -0.198 1.198 20 H -0.197 1.197 21 H -0.212 1.212 22 C -0.121 4.121 23 C 0.022 3.978 24 H 0.094 0.906 25 C -0.208 4.208 26 O -0.311 6.311 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.680 5.839 12.741 17.620 hybrid contribution 0.107 0.975 0.819 1.278 sum -10.572 6.814 13.560 18.495 Atomic orbital electron populations 1.22100 0.93807 1.02532 1.02967 1.22798 0.95267 0.96164 0.84130 0.89707 1.23199 0.97670 0.99245 0.97745 1.23227 0.97609 0.91906 0.92738 0.92401 1.60510 1.50581 1.08792 1.09752 1.22288 0.89409 0.98382 0.90975 0.90576 1.22798 0.96850 1.00175 0.97884 1.22083 0.98006 0.97775 0.96133 1.19637 0.92791 0.94892 0.92718 0.99025 1.22391 1.08091 0.99503 1.34475 0.93787 1.27157 0.93056 1.06292 0.96508 1.70902 1.38218 1.04559 1.44207 0.83010 0.76255 0.71385 0.76046 1.19806 1.19703 1.21159 1.22259 0.96409 0.97724 0.95733 1.23003 0.93047 0.89289 0.92426 0.90609 1.21920 0.96479 1.02514 0.99882 1.88408 1.70826 1.40782 1.31113 0.92691 0.91763 0.90167 0.90132 0.89899 0.83306 0.91258 0.91929 0.94867 0.95491 0.92774 0.93197 0.92595 0.92186 0.91074 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.44 71.98 0.68 -1.94 16 2 C 0.07 1.47 4.16 31.06 0.13 1.59 16 3 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 4 C -0.14 -3.01 6.13 31.86 0.20 -2.81 16 5 C 0.06 1.28 2.61 46.37 0.12 1.40 16 6 H 0.06 1.39 7.80 -2.39 -0.02 1.38 16 7 N -0.66 -17.64 6.23 -456.38 -2.84 -20.49 16 8 C 0.10 3.24 3.03 46.03 0.14 3.38 16 9 H 0.08 2.46 7.85 -2.38 -0.02 2.44 16 10 C -0.14 -4.71 6.36 31.32 0.20 -4.51 16 11 C -0.10 -4.63 5.37 31.32 0.17 -4.47 16 12 C 0.02 0.93 2.41 -10.47 -0.03 0.90 16 13 H -0.01 -0.46 8.00 -2.39 -0.02 -0.48 16 14 C -0.61 -34.27 8.38 25.60 0.21 -34.06 16 15 H 0.04 2.46 7.77 -2.91 -0.02 2.44 16 16 C -0.03 -1.84 5.34 84.66 0.45 -1.39 16 17 N -0.94 -57.53 13.44 21.45 0.29 -57.25 16 18 Si 1.11 50.53 29.90 68.60 2.05 52.58 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 22 C -0.08 -3.38 5.99 31.93 0.19 -3.18 16 23 C 0.08 1.73 3.56 31.26 0.11 1.84 16 24 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 25 C -0.15 -2.80 9.62 71.98 0.69 -2.11 16 26 O -0.39 -9.22 10.70 -148.98 -1.59 -10.81 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.89 7.86 -2.39 -0.02 1.87 16 32 H 0.35 8.70 7.80 -89.69 -0.70 8.00 16 33 H 0.07 2.13 7.58 -2.38 -0.02 2.11 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.03 1.64 7.83 -2.38 -0.02 1.62 16 36 H 0.03 1.29 6.91 -2.39 -0.02 1.28 16 37 H 0.26 16.00 5.54 -92.70 -0.51 15.48 16 38 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.06 2.32 8.05 -2.39 -0.02 2.30 16 40 H 0.06 1.13 8.14 -2.38 -0.02 1.12 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.31 7.98 -2.39 -0.02 1.29 16 Total: -1.00 -63.27 326.36 1.70 -61.58 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.52 Total: 19.73 kcal Atomic # 6 Polarization: -48.62 SS G_CDS: 3.27 Total: -45.35 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -2.55 Total: -77.73 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.59 Total: -10.81 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -63.27 1.70 -61.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.392 kcal (2) G-P(sol) polarization free energy of solvation -63.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds