Wall clock time and date at job start Mon Mar 30 2020 07:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.55396 * 2 1 4 4 C 1.55002 * 110.61664 * 237.12272 * 2 1 3 5 5 C 1.54809 * 102.09139 * 204.31795 * 4 2 1 6 6 H 1.08998 * 110.48984 * 262.06777 * 5 4 2 7 7 N 1.46903 * 110.48913 * 139.56003 * 5 4 2 8 8 C 1.46897 * 110.99992 * 76.97945 * 7 5 4 9 9 H 1.08998 * 110.02127 * 325.70332 * 8 7 5 10 10 C 1.53871 * 110.03303 * 87.09899 * 8 7 5 11 11 C 1.54264 * 106.60389 * 119.33008 * 10 8 7 12 12 C 1.54894 * 104.19400 * 23.60879 * 11 10 8 13 13 H 1.09005 * 110.75180 * 80.55364 * 12 11 10 14 14 C 1.50691 * 110.75679 * 203.74201 * 12 11 10 15 15 H 1.08004 * 120.00148 * 118.54850 * 14 12 11 16 16 C 1.37885 * 120.00249 * 298.54999 * 14 12 11 17 17 N 1.31515 * 120.00035 * 180.02562 * 16 14 12 18 18 Si 1.86794 * 119.99582 * 359.97438 * 16 14 12 19 19 H 1.48501 * 109.47314 * 90.00563 * 18 16 14 20 20 H 1.48505 * 109.46725 * 209.99982 * 18 16 14 21 21 H 1.48499 * 109.47440 * 330.00128 * 18 16 14 22 22 C 1.54267 * 110.03032 * 204.31315 * 8 7 5 23 23 C 1.54095 * 104.30870 * 20.81386 * 5 4 2 24 24 H 1.09001 * 109.88600 * 242.67179 * 23 5 4 25 25 C 1.53003 * 109.87989 * 121.51855 * 23 5 4 26 26 O 1.44059 * 107.13317 * 2.13400 * 23 5 4 27 27 H 1.08996 * 109.47063 * 182.87624 * 1 2 3 28 28 H 1.09002 * 109.46785 * 302.87532 * 1 2 3 29 29 H 1.08996 * 109.47269 * 62.87715 * 1 2 3 30 30 H 1.08998 * 110.90762 * 86.12311 * 4 2 1 31 31 H 1.09001 * 110.93649 * 322.52988 * 4 2 1 32 32 H 1.00897 * 110.99978 * 200.94098 * 7 5 4 33 33 H 1.08999 * 110.03441 * 238.61835 * 10 8 7 34 34 H 1.09004 * 110.02937 * 359.97438 * 10 8 7 35 35 H 1.08994 * 110.48801 * 142.28915 * 11 10 8 36 36 H 1.09000 * 110.48672 * 264.80207 * 11 10 8 37 37 H 0.96995 * 120.00023 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.49208 * 335.73489 * 22 8 7 39 39 H 1.09001 * 110.48912 * 98.37871 * 22 8 7 40 40 H 1.08993 * 109.47318 * 65.95661 * 25 23 5 41 41 H 1.09005 * 109.47339 * 185.95897 * 25 23 5 42 42 H 1.09006 * 109.46915 * 305.95619 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2184 5 6 3.4811 -1.2121 -0.7270 6 1 4.2405 -0.5282 -1.1058 7 7 3.7773 -2.5892 -1.1441 8 6 4.1428 -2.6416 -2.5659 9 1 3.5791 -1.8939 -3.1238 10 6 5.6526 -2.3953 -2.7314 11 6 6.2356 -3.6606 -3.3938 12 6 5.0268 -4.2995 -4.1217 13 1 4.8432 -3.8030 -5.0746 14 6 5.2456 -5.7766 -4.3249 15 1 4.5705 -6.4894 -3.8748 16 6 6.3076 -6.2181 -5.0854 17 7 6.4982 -7.5072 -5.2631 18 14 7.4748 -4.9852 -5.8644 19 1 8.5886 -4.6964 -4.9256 20 1 8.0228 -5.5499 -7.1238 21 1 6.7410 -3.7292 -6.1632 22 6 3.8599 -4.0481 -3.1327 23 6 3.3911 -1.1212 0.8086 24 1 4.0917 -0.3721 1.1774 25 6 3.7069 -2.4833 1.4299 26 8 2.0416 -0.7349 1.1326 27 1 -0.3633 -1.0263 0.0516 28 1 -0.3633 0.5579 0.8631 29 1 -0.3633 0.4685 -0.9146 30 1 2.1483 -0.1451 -2.0960 31 1 1.4567 -1.6600 -1.4273 32 1 4.5015 -2.9932 -0.5693 33 1 5.8218 -1.5280 -3.3696 34 1 6.1140 -2.2365 -1.7567 35 1 7.0135 -3.3930 -4.1088 36 1 6.6306 -4.3394 -2.6380 37 1 7.2450 -7.8178 -5.7984 38 1 3.8695 -4.7903 -2.3344 39 1 2.9045 -4.0631 -3.6572 40 1 4.7483 -2.7389 1.2349 41 1 3.5387 -2.4397 2.5060 42 1 3.0583 -3.2418 0.9913 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:51 Heat of formation + Delta-G solvation = -54.180365 kcal Electronic energy + Delta-G solvation = -19605.415995 eV Core-core repulsion = 16777.733592 eV Total energy + Delta-G solvation = -2827.682403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.00802 -37.85373 -34.59619 -32.76668 -32.24712 -30.20562 -28.70101 -28.26605 -26.61712 -23.86839 -23.26031 -21.45443 -20.34376 -19.48234 -19.17216 -16.97163 -16.51151 -16.00300 -15.68908 -15.04469 -14.61980 -14.46359 -13.97403 -13.32149 -12.99506 -12.79209 -12.60851 -12.46172 -12.30103 -12.17715 -12.00343 -11.76394 -11.66187 -11.04914 -10.95196 -10.89776 -10.86207 -10.68730 -10.29735 -10.01051 -9.88413 -9.74492 -9.65729 -9.35052 -8.97539 -8.51939 -8.12956 -6.04435 -4.02526 3.28845 3.38129 3.40044 3.68162 4.23726 4.43870 4.45954 4.71749 4.88091 4.98415 5.16130 5.22979 5.24483 5.33035 5.36992 5.40148 5.44537 5.52132 5.55637 5.66877 5.68854 5.88041 5.95818 5.98534 6.05461 6.15284 6.23669 6.30603 6.37922 6.45181 6.55540 6.71711 6.82794 6.88688 6.91779 7.18327 7.37837 7.60099 7.62297 7.81674 8.57567 9.00822 9.59059 11.09157 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.039984 B = 0.004645 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.105518 B = 6026.336370 C = 6071.725538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 H 0.064 0.936 4 C -0.140 4.140 5 C 0.054 3.946 6 H 0.050 0.950 7 N -0.670 5.670 8 C 0.080 3.920 9 H 0.068 0.932 10 C -0.150 4.150 11 C -0.128 4.128 12 C 0.011 3.989 13 H 0.030 0.970 14 C -0.507 4.507 15 H 0.074 0.926 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.883 3.117 19 H -0.280 1.280 20 H -0.296 1.296 21 H -0.267 1.267 22 C -0.090 4.090 23 C 0.078 3.922 24 H 0.063 0.937 25 C -0.151 4.151 26 O -0.370 6.370 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.345 0.655 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.262 0.738 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 16.013 10.211 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.082 0.918 4 C -0.178 4.178 5 C -0.057 4.057 6 H 0.068 0.932 7 N -0.304 5.304 8 C -0.029 4.029 9 H 0.087 0.913 10 C -0.189 4.189 11 C -0.166 4.166 12 C -0.008 4.008 13 H 0.048 0.952 14 C -0.545 4.545 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.542 5.542 18 Si 0.713 3.287 19 H -0.206 1.206 20 H -0.223 1.223 21 H -0.192 1.192 22 C -0.128 4.128 23 C 0.020 3.980 24 H 0.081 0.919 25 C -0.209 4.209 26 O -0.290 6.290 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.167 0.833 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.372 15.665 10.225 20.107 hybrid contribution 1.967 1.124 -0.696 2.370 sum -5.405 16.789 9.529 20.047 Atomic orbital electron populations 1.21748 0.93208 1.03137 1.02054 1.23039 0.95162 0.94845 0.85519 0.91819 1.23256 0.96174 1.00841 0.97551 1.22843 0.96943 0.91472 0.94393 0.93224 1.60973 1.48945 1.16277 1.04203 1.22383 0.93385 0.99537 0.87595 0.91326 1.22891 0.96956 0.99313 0.99789 1.22764 0.99457 0.94977 0.99367 1.20121 0.90472 0.96629 0.93572 0.95238 1.21029 1.12258 0.89868 1.31306 0.90795 1.25005 0.97517 0.94840 0.95800 1.69906 1.30681 1.13306 1.40341 0.86894 0.81493 0.81843 0.78517 1.20619 1.22329 1.19173 1.22272 0.98494 0.93449 0.98600 1.22796 0.84578 0.97026 0.93598 0.91912 1.21852 1.01923 0.96352 1.00736 1.88937 1.27607 1.73579 1.38840 0.91520 0.92173 0.91240 0.90923 0.88984 0.83287 0.93003 0.93169 0.93918 0.91552 0.92772 0.91248 0.92955 0.91564 0.92344 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.66 37.16 0.36 -0.95 16 2 C 0.07 0.77 3.97 -25.67 -0.10 0.66 16 3 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.14 -1.60 5.62 -24.72 -0.14 -1.73 16 5 C 0.05 0.66 3.21 -66.19 -0.21 0.45 16 6 H 0.05 0.60 7.95 -51.93 -0.41 0.18 16 7 N -0.67 -9.37 4.94 -96.98 -0.48 -9.85 16 8 C 0.08 1.29 3.07 -66.60 -0.20 1.09 16 9 H 0.07 1.06 7.40 -51.93 -0.38 0.68 16 10 C -0.15 -2.50 6.33 -25.62 -0.16 -2.66 16 11 C -0.13 -2.67 5.07 -25.07 -0.13 -2.80 16 12 C 0.01 0.26 2.30 -89.71 -0.21 0.05 16 13 H 0.03 0.70 7.37 -51.93 -0.38 0.32 16 14 C -0.51 -14.15 9.13 -34.44 -0.31 -14.47 16 15 H 0.07 2.24 8.03 -52.48 -0.42 1.82 16 16 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 17 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 18 Si 0.88 21.91 24.46 -169.99 -4.16 17.76 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.27 -6.35 6.48 56.52 0.37 -5.98 16 22 C -0.09 -1.76 5.96 -25.00 -0.15 -1.91 16 23 C 0.08 0.91 4.07 -26.16 -0.11 0.80 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 C -0.15 -1.70 8.31 37.16 0.31 -1.39 16 26 O -0.37 -4.77 10.91 -35.23 -0.38 -5.16 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.18 7.98 -51.93 -0.41 0.77 16 32 H 0.35 4.72 5.77 -39.29 -0.23 4.49 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.75 7.58 -51.93 -0.39 0.36 16 35 H 0.04 0.92 4.91 -51.93 -0.25 0.67 16 36 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.07 1.43 7.95 -51.93 -0.41 1.01 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.67 7.14 -51.93 -0.37 0.30 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.06 7.45 -51.93 -0.39 0.67 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -29.81 316.26 -8.09 -37.90 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.45 Total: 2.52 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -1.15 Total: -20.95 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.29 Total: -36.83 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.38 Total: -5.16 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.16 Total: 17.76 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.81 -8.09 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.283 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds