Wall clock time and date at job start Mon Mar 30 2020 07:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.55396 * 2 1 4 4 C 1.55002 * 110.61664 * 237.12272 * 2 1 3 5 5 C 1.54809 * 102.09139 * 204.31795 * 4 2 1 6 6 H 1.08998 * 110.48984 * 262.06777 * 5 4 2 7 7 N 1.46903 * 110.48913 * 139.56003 * 5 4 2 8 8 C 1.46897 * 110.99992 * 76.97945 * 7 5 4 9 9 H 1.08998 * 110.02127 * 325.70332 * 8 7 5 10 10 C 1.53871 * 110.03303 * 87.09899 * 8 7 5 11 11 C 1.54264 * 106.60389 * 119.33008 * 10 8 7 12 12 C 1.54894 * 104.19400 * 23.60879 * 11 10 8 13 13 H 1.09005 * 110.75180 * 80.55364 * 12 11 10 14 14 C 1.50691 * 110.75679 * 203.74201 * 12 11 10 15 15 H 1.08004 * 120.00148 * 118.54850 * 14 12 11 16 16 C 1.37885 * 120.00249 * 298.54999 * 14 12 11 17 17 N 1.31515 * 120.00035 * 180.02562 * 16 14 12 18 18 Si 1.86794 * 119.99582 * 359.97438 * 16 14 12 19 19 H 1.48501 * 109.47314 * 90.00563 * 18 16 14 20 20 H 1.48505 * 109.46725 * 209.99982 * 18 16 14 21 21 H 1.48499 * 109.47440 * 330.00128 * 18 16 14 22 22 C 1.54267 * 110.03032 * 204.31315 * 8 7 5 23 23 C 1.54095 * 104.30870 * 20.81386 * 5 4 2 24 24 H 1.09001 * 109.88600 * 242.67179 * 23 5 4 25 25 C 1.53003 * 109.87989 * 121.51855 * 23 5 4 26 26 O 1.44059 * 107.13317 * 2.13400 * 23 5 4 27 27 H 1.08996 * 109.47063 * 182.87624 * 1 2 3 28 28 H 1.09002 * 109.46785 * 302.87532 * 1 2 3 29 29 H 1.08996 * 109.47269 * 62.87715 * 1 2 3 30 30 H 1.08998 * 110.90762 * 86.12311 * 4 2 1 31 31 H 1.09001 * 110.93649 * 322.52988 * 4 2 1 32 32 H 1.00897 * 110.99978 * 200.94098 * 7 5 4 33 33 H 1.08999 * 110.03441 * 238.61835 * 10 8 7 34 34 H 1.09004 * 110.02937 * 359.97438 * 10 8 7 35 35 H 1.08994 * 110.48801 * 142.28915 * 11 10 8 36 36 H 1.09000 * 110.48672 * 264.80207 * 11 10 8 37 37 H 0.96995 * 120.00023 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.49208 * 335.73489 * 22 8 7 39 39 H 1.09001 * 110.48912 * 98.37871 * 22 8 7 40 40 H 1.08993 * 109.47318 * 65.95661 * 25 23 5 41 41 H 1.09005 * 109.47339 * 185.95897 * 25 23 5 42 42 H 1.09006 * 109.46915 * 305.95619 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2184 5 6 3.4811 -1.2121 -0.7270 6 1 4.2405 -0.5282 -1.1058 7 7 3.7773 -2.5892 -1.1441 8 6 4.1428 -2.6416 -2.5659 9 1 3.5791 -1.8939 -3.1238 10 6 5.6526 -2.3953 -2.7314 11 6 6.2356 -3.6606 -3.3938 12 6 5.0268 -4.2995 -4.1217 13 1 4.8432 -3.8030 -5.0746 14 6 5.2456 -5.7766 -4.3249 15 1 4.5705 -6.4894 -3.8748 16 6 6.3076 -6.2181 -5.0854 17 7 6.4982 -7.5072 -5.2631 18 14 7.4748 -4.9852 -5.8644 19 1 8.5886 -4.6964 -4.9256 20 1 8.0228 -5.5499 -7.1238 21 1 6.7410 -3.7292 -6.1632 22 6 3.8599 -4.0481 -3.1327 23 6 3.3911 -1.1212 0.8086 24 1 4.0917 -0.3721 1.1774 25 6 3.7069 -2.4833 1.4299 26 8 2.0416 -0.7349 1.1326 27 1 -0.3633 -1.0263 0.0516 28 1 -0.3633 0.5579 0.8631 29 1 -0.3633 0.4685 -0.9146 30 1 2.1483 -0.1451 -2.0960 31 1 1.4567 -1.6600 -1.4273 32 1 4.5015 -2.9932 -0.5693 33 1 5.8218 -1.5280 -3.3696 34 1 6.1140 -2.2365 -1.7567 35 1 7.0135 -3.3930 -4.1088 36 1 6.6306 -4.3394 -2.6380 37 1 7.2450 -7.8178 -5.7984 38 1 3.8695 -4.7903 -2.3344 39 1 2.9045 -4.0631 -3.6572 40 1 4.7483 -2.7389 1.2349 41 1 3.5387 -2.4397 2.5060 42 1 3.0583 -3.2418 0.9913 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:51 Heat of formation + Delta-G solvation = -73.599044 kcal Electronic energy + Delta-G solvation = -19606.258052 eV Core-core repulsion = 16777.733592 eV Total energy + Delta-G solvation = -2828.524460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95637 -39.25104 -35.91885 -34.30339 -33.52498 -31.47751 -29.93208 -29.51246 -28.10991 -25.24088 -24.59645 -22.30155 -21.54793 -20.86540 -20.69831 -18.75070 -17.68344 -17.14098 -16.72518 -16.58846 -15.84159 -15.73862 -15.24301 -14.83794 -14.40389 -14.26437 -14.01497 -13.57008 -13.39231 -13.13287 -13.05671 -12.86894 -12.79768 -12.63400 -12.48523 -12.04555 -11.97153 -11.73660 -11.71093 -11.52268 -11.46222 -11.42642 -11.11166 -11.02418 -10.68989 -10.56392 -9.24280 -8.27872 -6.30717 1.31715 1.35696 1.46357 2.34722 2.86043 3.07643 3.15904 3.57842 3.85259 3.90584 3.97636 4.05382 4.13127 4.19394 4.37261 4.45312 4.52831 4.55721 4.68177 4.69752 4.71399 4.82924 4.87655 4.90257 4.97077 4.99537 5.05141 5.07036 5.15154 5.17020 5.22216 5.30825 5.38095 5.42418 5.52292 5.67077 5.81414 6.05510 6.23916 6.35364 6.52317 6.76543 7.34638 8.89565 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.039984 B = 0.004645 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.105518 B = 6026.336370 C = 6071.725538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.081 0.919 4 C -0.139 4.139 5 C 0.054 3.946 6 H 0.063 0.937 7 N -0.676 5.676 8 C 0.095 3.905 9 H 0.084 0.916 10 C -0.140 4.140 11 C -0.127 4.127 12 C 0.004 3.996 13 H 0.029 0.971 14 C -0.513 4.513 15 H 0.029 0.971 16 C 0.010 3.990 17 N -0.955 5.955 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.298 1.298 21 H -0.245 1.245 22 C -0.086 4.086 23 C 0.077 3.923 24 H 0.079 0.921 25 C -0.149 4.149 26 O -0.392 6.392 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.347 0.653 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 19.556 10.534 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 H 0.098 0.902 4 C -0.177 4.177 5 C -0.056 4.056 6 H 0.081 0.919 7 N -0.310 5.310 8 C -0.015 4.015 9 H 0.102 0.898 10 C -0.179 4.179 11 C -0.165 4.165 12 C -0.015 4.015 13 H 0.047 0.953 14 C -0.551 4.551 15 H 0.047 0.953 16 C -0.187 4.187 17 N -0.596 5.596 18 Si 0.774 3.226 19 H -0.192 1.192 20 H -0.225 1.225 21 H -0.169 1.169 22 C -0.125 4.125 23 C 0.019 3.981 24 H 0.097 0.903 25 C -0.207 4.207 26 O -0.312 6.312 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.867 19.230 10.569 22.992 hybrid contribution 1.696 -0.084 -0.743 1.854 sum -5.171 19.147 9.825 22.133 Atomic orbital electron populations 1.21765 0.92407 1.02572 1.03262 1.23212 0.95916 0.95222 0.84413 0.90151 1.23249 0.95451 1.00512 0.98535 1.22916 0.97599 0.90237 0.94827 0.91878 1.60860 1.49039 1.18013 1.03071 1.22120 0.93472 0.96989 0.88870 0.89795 1.22832 0.96667 0.97475 1.00917 1.22620 0.98238 0.96716 0.98935 1.20098 0.93399 0.93287 0.94726 0.95327 1.21363 1.11142 0.92183 1.30408 0.95294 1.25902 0.99537 0.96692 0.96541 1.70068 1.31858 1.15737 1.41905 0.85835 0.79408 0.79887 0.77437 1.19218 1.22537 1.16891 1.22153 0.97176 0.95739 0.97401 1.22881 0.84545 0.97395 0.93286 0.90280 1.21824 1.02117 0.95884 1.00844 1.88924 1.28270 1.74077 1.39957 0.92900 0.91616 0.89472 0.89376 0.90888 0.83063 0.90976 0.90962 0.94113 0.93153 0.92697 0.93192 0.93073 0.90461 0.91986 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.66 71.98 0.70 -1.60 16 2 C 0.07 1.30 3.97 31.28 0.12 1.42 16 3 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.14 -2.79 5.62 31.90 0.18 -2.61 16 5 C 0.05 1.15 3.21 45.90 0.15 1.30 16 6 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 7 N -0.68 -17.39 4.94 -460.74 -2.28 -19.67 16 8 C 0.10 2.80 3.07 45.64 0.14 2.94 16 9 H 0.08 2.27 7.40 -2.39 -0.02 2.25 16 10 C -0.14 -4.11 6.33 31.32 0.20 -3.91 16 11 C -0.13 -5.06 5.07 31.67 0.16 -4.89 16 12 C 0.00 0.19 2.30 -10.21 -0.02 0.16 16 13 H 0.03 1.32 7.37 -2.38 -0.02 1.30 16 14 C -0.51 -29.60 9.13 25.60 0.23 -29.37 16 15 H 0.03 1.86 8.03 -2.91 -0.02 1.84 16 16 C 0.01 0.56 5.46 84.66 0.46 1.02 16 17 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 18 Si 0.95 44.96 24.46 68.60 1.68 46.63 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.25 -10.68 6.48 99.48 0.64 -10.03 16 22 C -0.09 -3.35 5.96 31.71 0.19 -3.16 16 23 C 0.08 1.59 4.07 30.97 0.13 1.72 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 25 C -0.15 -3.12 8.31 71.98 0.60 -2.52 16 26 O -0.39 -9.32 10.91 -148.98 -1.63 -10.95 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.76 7.98 -2.39 -0.02 1.74 16 32 H 0.35 8.74 5.77 -89.70 -0.52 8.23 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.84 7.58 -2.38 -0.02 1.82 16 35 H 0.04 1.63 4.91 -2.39 -0.01 1.61 16 36 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 37 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.05 2.10 7.95 -2.39 -0.02 2.08 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.08 1.41 7.14 -2.39 -0.02 1.40 16 41 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.06 1.57 7.45 -2.38 -0.02 1.55 16 Total: -1.00 -66.19 316.26 1.70 -64.49 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.40 Total: 19.38 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 3.23 Total: -39.51 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -1.98 Total: -80.04 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.63 Total: -10.95 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.68 Total: 46.63 kcal Total: -66.19 1.70 -64.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.110 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds