Wall clock time and date at job start Mon Mar 30 2020 06:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47318 * 2 1 4 4 C 1.53002 * 109.46876 * 239.99891 * 2 1 3 5 5 C 1.52995 * 109.46866 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47377 * 60.00044 * 5 4 2 7 7 C 1.53002 * 109.47087 * 299.99820 * 6 5 4 8 8 H 1.08996 * 109.47236 * 300.00148 * 7 6 5 9 9 N 1.46496 * 109.47069 * 180.02562 * 7 6 5 10 10 C 1.34778 * 120.00070 * 85.00244 * 9 7 6 11 11 O 1.21274 * 119.99823 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99709 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.46718 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46929 * 180.02562 * 13 12 10 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.52995 * 109.46866 * 59.99867 * 7 6 5 24 24 H 1.09003 * 109.47014 * 300.00354 * 1 2 3 25 25 H 1.09005 * 109.47020 * 59.99578 * 1 2 3 26 26 H 1.08996 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46937 * 299.99823 * 4 2 1 28 28 H 1.08995 * 109.46843 * 60.00257 * 4 2 1 29 29 H 1.09006 * 109.46917 * 180.02562 * 5 4 2 30 30 H 1.09002 * 109.47356 * 300.00007 * 5 4 2 31 31 H 1.09006 * 109.47180 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.47203 * 59.99989 * 6 5 4 33 33 H 0.97005 * 120.00159 * 264.99881 * 9 7 6 34 34 H 1.09000 * 109.46918 * 59.99955 * 12 10 9 35 35 H 1.09002 * 109.47135 * 299.99692 * 12 10 9 36 36 H 1.09000 * 109.47441 * 60.00302 * 13 12 10 37 37 H 1.09002 * 109.47087 * 299.99748 * 13 12 10 38 38 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 39 39 H 1.09006 * 109.47297 * 299.99829 * 14 13 12 40 40 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 41 41 H 1.09008 * 109.47231 * 60.00437 * 23 7 6 42 42 H 1.09006 * 109.46917 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2495 8 1 3.9332 0.3054 1.2497 9 7 4.0579 -1.4127 2.4457 10 6 5.2799 -1.1268 2.9371 11 8 5.9753 -0.2983 2.3889 12 6 5.7820 -1.8369 4.1680 13 6 7.1848 -1.3320 4.5113 14 6 7.6949 -2.0533 5.7605 15 6 9.0770 -1.5564 6.0984 16 1 9.5450 -0.8019 5.4833 17 6 9.7440 -2.0650 7.1926 18 7 9.1744 -2.9841 7.9412 19 14 11.4574 -1.4496 7.6109 20 1 11.9519 -2.1487 8.8242 21 1 12.3728 -1.7227 6.4739 22 1 11.4093 0.0123 7.8677 23 6 2.0396 -0.7216 1.2492 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6766 -1.7490 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.9333 -1.2353 -2.1392 30 1 3.9337 0.3057 -1.2487 31 1 5.1695 -1.4434 0.0007 32 1 3.7158 -2.4709 0.0001 33 1 3.5018 -2.0757 2.8840 34 1 5.8185 -2.9098 3.9790 35 1 5.1094 -1.6375 5.0022 36 1 7.1488 -0.2591 4.7001 37 1 7.8572 -1.5317 3.6769 38 1 7.7311 -3.1261 5.5713 39 1 7.0226 -1.8539 6.5951 40 1 8.2848 -3.3038 7.7238 41 1 1.6758 -1.7492 1.2491 42 1 1.6763 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593958311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:22 Heat of formation + Delta-G solvation = -94.539632 kcal Electronic energy + Delta-G solvation = -18544.753644 eV Core-core repulsion = 15715.321132 eV Total energy + Delta-G solvation = -2829.432512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04441 -38.41170 -34.64903 -34.27476 -32.49461 -32.03908 -29.86580 -27.32095 -26.66911 -23.73234 -22.53895 -21.75611 -20.55960 -20.32088 -19.59147 -17.09534 -16.26857 -16.14977 -15.44374 -15.22942 -14.65053 -14.43925 -13.87992 -13.67452 -13.65474 -13.20835 -12.97312 -12.85263 -12.69365 -12.13094 -11.85689 -11.53049 -11.44850 -11.38318 -11.21060 -10.94864 -10.82375 -10.69021 -10.62239 -10.46029 -10.07657 -9.78833 -9.78172 -9.43387 -8.97655 -8.47239 -8.26797 -6.30803 -3.98664 2.91928 3.26422 3.48900 3.51145 3.69635 4.35282 4.43609 4.54991 4.60555 4.81655 4.88300 5.02610 5.16206 5.17662 5.26476 5.30201 5.35573 5.40498 5.46460 5.50896 5.63016 5.64397 5.65877 5.74945 5.84730 5.88395 5.94048 6.00255 6.09177 6.17094 6.22933 6.56216 6.62515 6.79977 7.02775 7.48760 7.59853 7.63049 8.29948 8.46518 8.54098 8.95331 9.73052 11.10112 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.055519 B = 0.003117 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.206388 B = 8980.374847 C = 9210.855960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.130 4.130 7 C 0.144 3.856 8 H 0.085 0.915 9 N -0.737 5.737 10 C 0.513 3.487 11 O -0.537 6.537 12 C -0.140 4.140 13 C -0.087 4.087 14 C 0.007 3.993 15 C -0.599 4.599 16 H 0.049 0.951 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 1.069 2.931 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.288 1.288 23 C -0.120 4.120 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.398 0.602 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.267 0.733 41 H 0.067 0.933 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.967 2.700 -16.929 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.040 3.960 8 H 0.103 0.897 9 N -0.389 5.389 10 C 0.301 3.699 11 O -0.413 6.413 12 C -0.180 4.180 13 C -0.126 4.126 14 C -0.030 4.030 15 C -0.638 4.638 16 H 0.068 0.932 17 C -0.190 4.190 18 N -0.553 5.553 19 Si 0.897 3.103 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.214 1.214 23 C -0.158 4.158 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.193 3.140 -16.237 23.856 hybrid contribution -1.619 -0.214 -0.912 1.871 sum -18.813 2.926 -17.149 25.624 Atomic orbital electron populations 1.21823 0.94991 1.01835 1.01749 1.21082 0.95519 0.99830 0.94399 0.90925 1.21629 0.95622 1.00642 0.97350 1.21494 0.95349 1.01099 0.97602 1.21929 1.01521 0.99338 0.94065 1.20902 0.93196 0.97465 0.84460 0.89688 1.46211 1.18511 1.44243 1.29958 1.21181 0.80511 0.82397 0.85804 1.90670 1.55969 1.33776 1.60892 1.21857 1.00847 1.00777 0.94548 1.21297 0.91310 1.00263 0.99684 1.19261 0.96581 0.95100 0.92043 1.22088 1.01608 1.25563 1.14499 0.93239 1.25862 1.04919 0.94968 0.93280 1.70792 1.16872 1.27998 1.39614 0.83548 0.74746 0.75772 0.76216 1.20813 1.21434 1.21439 1.21864 0.94219 1.01346 0.98418 0.92627 0.92608 0.92671 0.91935 0.91938 0.91776 0.91748 0.91313 0.91954 0.76867 0.89511 0.89506 0.92562 0.92572 0.97549 0.97545 0.92223 0.91447 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.65 2.72 -90.62 -0.25 -0.90 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.82 5.20 -26.73 -0.14 -0.96 16 5 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 6 C -0.13 -1.37 5.49 -26.73 -0.15 -1.51 16 7 C 0.14 1.58 2.45 -67.93 -0.17 1.41 16 8 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 9 N -0.74 -8.83 5.08 -53.81 -0.27 -9.10 16 10 C 0.51 8.41 7.79 -10.98 -0.09 8.33 16 11 O -0.54 -10.96 15.64 5.56 0.09 -10.88 16 12 C -0.14 -2.37 5.70 -27.88 -0.16 -2.53 16 13 C -0.09 -1.95 4.44 -26.73 -0.12 -2.07 16 14 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 15 C -0.60 -17.87 9.11 -34.44 -0.31 -18.19 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 17 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 18 N -0.92 -28.70 13.65 55.43 0.76 -27.94 16 19 Si 1.07 26.16 29.90 -169.99 -5.08 21.07 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 C -0.12 -0.97 4.67 -26.73 -0.12 -1.10 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.40 3.64 8.60 -40.82 -0.35 3.29 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 37 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 38 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 39 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 40 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 41 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -33.86 335.40 -8.83 -42.69 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.83 Total: -2.01 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -1.53 Total: -18.89 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.48 Total: -37.04 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.08 Total: 21.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.86 -8.83 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593958311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.851 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds