Wall clock time and date at job start Mon Mar 30 2020 06:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47094 * 2 1 4 4 C 1.52995 * 109.47075 * 119.99867 * 2 1 3 5 5 C 1.53005 * 109.46922 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46784 * 299.99751 * 5 4 2 7 7 C 1.53004 * 109.47194 * 60.00256 * 6 5 4 8 8 H 1.09005 * 109.46920 * 59.99827 * 7 6 5 9 9 N 1.46499 * 109.47550 * 179.97438 * 7 6 5 10 10 C 1.34779 * 119.99872 * 275.00173 * 9 7 6 11 11 O 1.21286 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00201 * 179.97438 * 10 9 7 13 13 C 1.52992 * 109.47592 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00289 * 19 17 15 21 21 H 1.48505 * 109.47195 * 210.00171 * 19 17 15 22 22 H 1.48493 * 109.47449 * 330.00136 * 19 17 15 23 23 C 1.52997 * 109.46915 * 300.00021 * 7 6 5 24 24 H 1.08994 * 109.46826 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46709 * 299.99711 * 1 2 3 26 26 H 1.08999 * 109.47460 * 60.00033 * 1 2 3 27 27 H 1.09004 * 109.47696 * 299.99817 * 4 2 1 28 28 H 1.08993 * 109.47476 * 60.00656 * 4 2 1 29 29 H 1.08994 * 109.47191 * 59.99529 * 5 4 2 30 30 H 1.09002 * 109.47136 * 180.02562 * 5 4 2 31 31 H 1.08993 * 109.47739 * 300.00192 * 6 5 4 32 32 H 1.09000 * 109.47245 * 179.97438 * 6 5 4 33 33 H 0.96992 * 119.99793 * 94.99803 * 9 7 6 34 34 H 1.09002 * 109.47210 * 59.99599 * 12 10 9 35 35 H 1.09001 * 109.46665 * 299.99857 * 12 10 9 36 36 H 1.09002 * 109.47103 * 59.99616 * 13 12 10 37 37 H 1.08998 * 109.46862 * 300.00428 * 13 12 10 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 40 40 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47176 * 179.97438 * 23 7 6 42 42 H 1.08995 * 109.47240 * 299.99705 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7206 1.2495 6 6 4.0805 -1.4416 0.0003 7 6 3.5705 -0.7204 -1.2490 8 1 3.9335 0.3074 -1.2488 9 7 4.0596 -1.4103 -2.4452 10 6 5.2816 -1.1235 -2.9362 11 8 5.9761 -0.2939 -2.3880 12 6 5.7852 -1.8336 -4.1664 13 6 7.1871 -1.3266 -4.5100 14 6 7.6986 -2.0480 -5.7585 15 6 9.0793 -1.5481 -6.0973 16 1 9.5456 -0.7919 -5.4833 17 6 9.7477 -2.0570 -7.1907 18 7 9.1801 -2.9783 -7.9381 19 14 11.4594 -1.4380 -7.6102 20 1 12.4719 -2.2726 -6.9149 21 1 11.6709 -1.5233 -9.0776 22 1 11.5964 -0.0259 -7.1717 23 6 2.0405 -0.7209 -1.2492 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.6767 -0.2074 2.1393 28 1 1.6768 -1.7488 1.2492 29 1 3.9330 0.3071 1.2496 30 1 3.9334 -1.2348 2.1393 31 1 3.7176 -2.4693 0.0000 32 1 5.1705 -1.4408 0.0002 33 1 3.5041 -2.0735 -2.8838 34 1 5.1128 -1.6354 -5.0011 35 1 5.8226 -2.9063 -3.9768 36 1 7.8597 -1.5244 -3.6754 37 1 7.1492 -0.2539 -4.6995 38 1 7.0261 -1.8505 -6.5933 39 1 7.7366 -3.1206 -5.5684 40 1 9.6502 -3.3360 -8.7075 41 1 1.6771 -0.2067 -2.1390 42 1 1.6775 -1.7486 -1.2494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593958312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:24 Heat of formation + Delta-G solvation = -90.681160 kcal Electronic energy + Delta-G solvation = -18512.137680 eV Core-core repulsion = 15682.872483 eV Total energy + Delta-G solvation = -2829.265196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.98757 -38.35660 -34.51749 -34.06839 -32.44646 -31.96944 -29.86120 -27.57859 -26.64501 -23.99875 -22.50720 -21.66698 -20.42281 -20.13164 -19.50174 -16.85170 -16.12105 -15.97928 -15.37120 -15.16284 -14.62085 -14.46662 -14.32099 -13.81762 -13.56741 -13.11894 -12.82956 -12.66724 -12.23688 -12.10238 -11.84151 -11.74847 -11.46968 -11.28922 -11.17387 -10.85308 -10.78229 -10.62492 -10.54695 -10.50796 -10.42471 -9.63946 -9.60566 -9.21811 -8.97552 -8.91696 -8.29728 -5.95481 -3.96698 2.99139 3.32574 3.36424 3.42073 3.47263 4.38547 4.46985 4.51149 4.58666 4.85236 4.91554 5.07735 5.19638 5.21125 5.32526 5.33292 5.39089 5.40589 5.43721 5.53771 5.66521 5.75529 5.76699 5.77987 5.88333 5.91587 5.97409 6.03513 6.13313 6.22527 6.32621 6.62062 6.76973 6.97567 7.20193 7.68635 7.74409 7.87046 8.05621 8.49584 8.53931 9.10523 9.67122 11.16102 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.055710 B = 0.003106 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.482175 B = 9013.217354 C = 9242.108981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.130 4.130 7 C 0.145 3.855 8 H 0.085 0.915 9 N -0.738 5.738 10 C 0.513 3.487 11 O -0.538 6.538 12 C -0.139 4.139 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.120 4.120 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.068 0.932 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.942 2.347 16.471 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.040 3.960 8 H 0.103 0.897 9 N -0.390 5.390 10 C 0.301 3.699 11 O -0.414 6.414 12 C -0.179 4.179 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.158 4.158 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.390 2.856 16.699 25.004 hybrid contribution 0.635 -0.149 -0.546 0.851 sum -17.754 2.707 16.153 24.155 Atomic orbital electron populations 1.21822 0.95019 1.01826 1.01726 1.21082 0.95491 0.99834 0.94431 0.90944 1.21629 0.95642 1.00634 0.97336 1.21497 0.95330 1.01091 0.97628 1.21931 1.01531 0.99335 0.94061 1.20894 0.93137 0.97478 0.84515 0.89712 1.46218 1.18587 1.44247 1.29922 1.21257 0.80438 0.82384 0.85851 1.90668 1.56047 1.33790 1.60934 1.21845 1.00920 1.00772 0.94366 1.21434 0.91348 1.00285 1.00196 1.19133 0.95805 0.95424 0.91326 1.21285 1.01111 1.22122 1.11043 0.92584 1.25022 0.98050 0.95147 0.96329 1.69964 1.37855 1.28614 1.17372 0.86591 0.84716 0.79345 0.77363 1.20682 1.21268 1.19837 1.21861 0.94276 1.01330 0.98381 0.92677 0.92644 0.92622 0.91986 0.91939 0.91757 0.91809 0.91959 0.91296 0.76863 0.89454 0.89453 0.92763 0.92747 0.96625 0.96638 0.93089 0.91328 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.19 37.16 0.34 -0.56 16 2 C -0.09 -0.66 2.72 -90.62 -0.25 -0.90 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.83 5.20 -26.73 -0.14 -0.97 16 5 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 6 C -0.13 -1.37 5.50 -26.73 -0.15 -1.52 16 7 C 0.14 1.59 2.45 -67.93 -0.17 1.42 16 8 H 0.08 1.13 7.58 -51.93 -0.39 0.73 16 9 N -0.74 -8.86 5.08 -53.80 -0.27 -9.14 16 10 C 0.51 8.40 7.79 -10.99 -0.09 8.31 16 11 O -0.54 -10.96 15.64 5.55 0.09 -10.88 16 12 C -0.14 -2.35 5.70 -27.89 -0.16 -2.51 16 13 C -0.09 -2.09 4.44 -26.74 -0.12 -2.21 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 19 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.12 -0.98 4.67 -26.73 -0.12 -1.10 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.40 3.67 8.60 -40.82 -0.35 3.32 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 336.71 15.07 5.07 5.07 Total: -1.00 -32.93 336.71 -8.84 -41.77 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.89 Total: -2.60 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -1.55 Total: -14.80 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.46 Total: -35.79 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.93 -8.84 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593958312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.914 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds