Wall clock time and date at job start Mon Mar 30 2020 06:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47094 * 2 1 4 4 C 1.52995 * 109.47075 * 119.99867 * 2 1 3 5 5 C 1.53005 * 109.46922 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46784 * 299.99751 * 5 4 2 7 7 C 1.53004 * 109.47194 * 60.00256 * 6 5 4 8 8 H 1.09005 * 109.46920 * 59.99827 * 7 6 5 9 9 N 1.46499 * 109.47550 * 179.97438 * 7 6 5 10 10 C 1.34779 * 119.99872 * 275.00173 * 9 7 6 11 11 O 1.21286 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00201 * 179.97438 * 10 9 7 13 13 C 1.52992 * 109.47592 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00289 * 19 17 15 21 21 H 1.48505 * 109.47195 * 210.00171 * 19 17 15 22 22 H 1.48493 * 109.47449 * 330.00136 * 19 17 15 23 23 C 1.52997 * 109.46915 * 300.00021 * 7 6 5 24 24 H 1.08994 * 109.46826 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46709 * 299.99711 * 1 2 3 26 26 H 1.08999 * 109.47460 * 60.00033 * 1 2 3 27 27 H 1.09004 * 109.47696 * 299.99817 * 4 2 1 28 28 H 1.08993 * 109.47476 * 60.00656 * 4 2 1 29 29 H 1.08994 * 109.47191 * 59.99529 * 5 4 2 30 30 H 1.09002 * 109.47136 * 180.02562 * 5 4 2 31 31 H 1.08993 * 109.47739 * 300.00192 * 6 5 4 32 32 H 1.09000 * 109.47245 * 179.97438 * 6 5 4 33 33 H 0.96992 * 119.99793 * 94.99803 * 9 7 6 34 34 H 1.09002 * 109.47210 * 59.99599 * 12 10 9 35 35 H 1.09001 * 109.46665 * 299.99857 * 12 10 9 36 36 H 1.09002 * 109.47103 * 59.99616 * 13 12 10 37 37 H 1.08998 * 109.46862 * 300.00428 * 13 12 10 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 40 40 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47176 * 179.97438 * 23 7 6 42 42 H 1.08995 * 109.47240 * 299.99705 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7206 1.2495 6 6 4.0805 -1.4416 0.0003 7 6 3.5705 -0.7204 -1.2490 8 1 3.9335 0.3074 -1.2488 9 7 4.0596 -1.4103 -2.4452 10 6 5.2816 -1.1235 -2.9362 11 8 5.9761 -0.2939 -2.3880 12 6 5.7852 -1.8336 -4.1664 13 6 7.1871 -1.3266 -4.5100 14 6 7.6986 -2.0480 -5.7585 15 6 9.0793 -1.5481 -6.0973 16 1 9.5456 -0.7919 -5.4833 17 6 9.7477 -2.0570 -7.1907 18 7 9.1801 -2.9783 -7.9381 19 14 11.4594 -1.4380 -7.6102 20 1 12.4719 -2.2726 -6.9149 21 1 11.6709 -1.5233 -9.0776 22 1 11.5964 -0.0259 -7.1717 23 6 2.0405 -0.7209 -1.2492 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.6767 -0.2074 2.1393 28 1 1.6768 -1.7488 1.2492 29 1 3.9330 0.3071 1.2496 30 1 3.9334 -1.2348 2.1393 31 1 3.7176 -2.4693 0.0000 32 1 5.1705 -1.4408 0.0002 33 1 3.5041 -2.0735 -2.8838 34 1 5.1128 -1.6354 -5.0011 35 1 5.8226 -2.9063 -3.9768 36 1 7.8597 -1.5244 -3.6754 37 1 7.1492 -0.2539 -4.6995 38 1 7.0261 -1.8505 -6.5933 39 1 7.7366 -3.1206 -5.5684 40 1 9.6502 -3.3360 -8.7075 41 1 1.6771 -0.2067 -2.1390 42 1 1.6775 -1.7486 -1.2494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593958312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:24 Heat of formation + Delta-G solvation = -110.595565 kcal Electronic energy + Delta-G solvation = -18513.001233 eV Core-core repulsion = 15682.872483 eV Total energy + Delta-G solvation = -2830.128750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09568 -39.33245 -36.16473 -35.42711 -34.03832 -33.10519 -30.95937 -29.27804 -27.25473 -25.86386 -23.42474 -22.74570 -21.76012 -21.34192 -20.51677 -18.61181 -17.76443 -17.10744 -16.70595 -16.48534 -15.98672 -15.37542 -15.28181 -14.98982 -14.75354 -14.25343 -14.23978 -13.85357 -13.58718 -13.25168 -13.11434 -12.75706 -12.63661 -12.52197 -12.43919 -12.38993 -12.20674 -11.86335 -11.56380 -11.52188 -11.45621 -11.34662 -11.25900 -11.14615 -10.64472 -10.55001 -10.00931 -8.20963 -6.30990 1.38973 1.40224 1.51851 1.67756 2.22655 2.41754 3.11906 3.67969 3.78121 3.86553 4.01055 4.14146 4.20606 4.23740 4.27351 4.44564 4.48563 4.53244 4.64449 4.77596 4.80967 4.86390 4.96906 4.99951 5.04094 5.09892 5.13218 5.13787 5.19067 5.25834 5.33144 5.39214 5.42370 5.52335 5.56256 5.62396 5.74948 5.86369 6.27089 6.60895 6.84433 7.32025 7.37761 8.90668 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.055710 B = 0.003106 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.482175 B = 9013.217354 C = 9242.108981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.126 4.126 7 C 0.142 3.858 8 H 0.057 0.943 9 N -0.716 5.716 10 C 0.515 3.485 11 O -0.586 6.586 12 C -0.131 4.131 13 C -0.082 4.082 14 C 0.026 3.974 15 C -0.549 4.549 16 H 0.050 0.950 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.112 4.112 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.415 0.585 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.070 0.930 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.318 1.927 17.018 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.165 4.165 7 C 0.038 3.962 8 H 0.075 0.925 9 N -0.368 5.368 10 C 0.303 3.697 11 O -0.466 6.466 12 C -0.170 4.170 13 C -0.120 4.120 14 C -0.011 4.011 15 C -0.587 4.587 16 H 0.069 0.931 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.150 4.150 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.252 0.748 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.819 2.411 17.253 26.387 hybrid contribution 1.036 -0.033 -0.705 1.254 sum -18.783 2.377 16.548 25.145 Atomic orbital electron populations 1.21784 0.93667 1.02439 1.02117 1.21087 0.96518 0.99208 0.94039 0.91916 1.21604 0.94015 1.01369 0.97721 1.21490 0.96773 1.00236 0.96886 1.21885 0.99494 1.00345 0.94796 1.21007 0.95252 0.95892 0.84041 0.92452 1.46024 1.17146 1.43837 1.29835 1.21077 0.81376 0.81767 0.85502 1.90657 1.57689 1.35965 1.62263 1.21682 0.98049 1.01735 0.95573 1.21152 0.94321 0.98941 0.97623 1.19016 0.94677 0.94788 0.92590 1.21699 1.02770 1.22546 1.11654 0.93147 1.25912 1.02403 0.95165 0.96015 1.70065 1.39654 1.29444 1.17793 0.85493 0.79390 0.78934 0.77525 1.19673 1.20194 1.19317 1.21822 0.91492 1.02606 0.99057 0.91914 0.92015 0.92572 0.90863 0.90934 0.92860 0.91028 0.90572 0.94568 0.74764 0.87388 0.87437 0.94274 0.94242 0.98032 0.98060 0.92620 0.91082 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.19 71.98 0.66 -0.71 16 2 C -0.09 -1.13 2.72 -10.79 -0.03 -1.16 16 3 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 4 C -0.11 -1.32 5.20 30.59 0.16 -1.16 16 5 C -0.12 -1.90 5.92 30.60 0.18 -1.72 16 6 C -0.13 -2.60 5.50 30.60 0.17 -2.43 16 7 C 0.14 3.02 2.45 44.99 0.11 3.13 16 8 H 0.06 1.56 7.58 -2.38 -0.02 1.55 16 9 N -0.72 -16.34 5.08 -442.52 -2.25 -18.59 16 10 C 0.51 16.78 7.79 87.66 0.68 17.47 16 11 O -0.59 -24.59 15.64 -3.05 -0.05 -24.63 16 12 C -0.13 -4.33 5.70 29.84 0.17 -4.16 16 13 C -0.08 -3.71 4.44 30.59 0.14 -3.58 16 14 C 0.03 1.42 4.97 29.85 0.15 1.57 16 15 C -0.55 -32.82 9.11 25.60 0.23 -32.58 16 16 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 17 C 0.00 0.18 5.46 84.66 0.46 0.64 16 18 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 19 Si 0.96 45.69 29.54 68.60 2.03 47.71 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 C -0.11 -1.57 4.67 30.59 0.14 -1.43 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.42 6.61 8.60 -92.71 -0.80 5.81 16 34 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 37 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 38 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -72.22 336.71 3.41 -68.81 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.16 Total: 9.49 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 3.23 Total: -26.13 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -1.96 Total: -75.24 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.22 3.41 -68.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593958312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.784 kcal (2) G-P(sol) polarization free energy of solvation -72.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds