Wall clock time and date at job start Mon Mar 30 2020 07:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58385 * 2 1 4 4 C 1.53189 * 109.58949 * 239.71568 * 2 1 3 5 5 C 1.53038 * 109.31612 * 185.43465 * 4 2 1 6 6 C 1.53040 * 109.53504 * 61.36350 * 5 4 2 7 7 C 1.53193 * 109.31597 * 298.63465 * 6 5 4 8 8 H 1.08996 * 109.58490 * 294.70788 * 7 6 5 9 9 C 1.53002 * 109.58493 * 174.42059 * 7 6 5 10 10 N 1.46925 * 109.70427 * 120.35265 * 2 1 3 11 11 C 1.34780 * 120.62916 * 353.49327 * 10 2 1 12 12 O 1.21281 * 120.00140 * 20.58054 * 11 10 2 13 13 C 1.50696 * 119.99906 * 200.58305 * 11 10 2 14 14 C 1.52999 * 109.47051 * 162.20093 * 13 11 10 15 15 C 1.53005 * 109.46827 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.46916 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99785 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00341 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00464 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99680 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47296 * 89.99769 * 20 18 16 22 22 H 1.48505 * 109.47385 * 210.00167 * 20 18 16 23 23 H 1.48502 * 109.47269 * 329.99736 * 20 18 16 24 24 H 1.08990 * 109.47489 * 178.34026 * 1 2 3 25 25 H 1.09003 * 109.47008 * 298.34433 * 1 2 3 26 26 H 1.09003 * 109.47213 * 58.34020 * 1 2 3 27 27 H 1.09001 * 109.49838 * 305.39280 * 4 2 1 28 28 H 1.09005 * 109.49847 * 65.48004 * 4 2 1 29 29 H 1.09003 * 109.46173 * 181.37974 * 5 4 2 30 30 H 1.08996 * 109.46045 * 301.34600 * 5 4 2 31 31 H 1.09009 * 109.49950 * 58.58759 * 6 5 4 32 32 H 1.09004 * 109.49844 * 178.64823 * 6 5 4 33 33 H 1.08993 * 109.47224 * 47.52852 * 9 7 6 34 34 H 1.09005 * 109.46209 * 167.52547 * 9 7 6 35 35 H 1.08994 * 109.47158 * 287.52230 * 9 7 6 36 36 H 1.09000 * 109.47271 * 282.20842 * 13 11 10 37 37 H 1.09008 * 109.47075 * 42.20531 * 13 11 10 38 38 H 1.08998 * 109.47214 * 299.99903 * 14 13 11 39 39 H 1.08992 * 109.46992 * 60.00517 * 14 13 11 40 40 H 1.08998 * 109.47175 * 299.99965 * 15 14 13 41 41 H 1.09000 * 109.47464 * 60.00604 * 15 14 13 42 42 H 0.97002 * 120.00238 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5678 -0.8433 -1.1729 6 6 3.9603 -1.6608 0.0600 7 6 3.4685 -0.9435 1.3211 8 1 3.9938 0.0053 1.4302 9 6 3.7338 -1.8206 2.5464 10 7 2.0254 -0.6990 1.1936 11 6 1.1721 -1.1086 2.1532 12 8 -0.0051 -1.2498 1.8978 13 6 1.6807 -1.3909 3.5433 14 6 0.5064 -1.4002 4.5239 15 6 1.0228 -1.6875 5.9353 16 6 -0.1339 -1.6960 6.9013 17 1 -1.1370 -1.5150 6.5442 18 6 0.0883 -1.9358 8.2407 19 7 -0.9211 -1.9437 9.0837 20 14 1.8232 -2.2496 8.8581 21 1 2.4538 -0.9603 9.2391 22 1 1.7731 -3.1450 10.0418 23 1 2.6220 -2.8931 7.7843 24 1 -0.3634 -1.0271 -0.0298 25 1 -0.3633 0.4879 0.9045 26 1 -0.3634 0.5394 -0.8747 27 1 1.6049 -1.7246 -1.2922 28 1 1.7638 -0.1655 -2.1372 29 1 3.9381 -1.3392 -2.0702 30 1 4.0045 0.1528 -1.1021 31 1 3.5036 -2.6489 0.0019 32 1 5.0449 -1.7630 0.0986 33 1 4.7574 -2.1935 2.5115 34 1 3.5925 -1.2312 3.4524 35 1 3.0406 -2.6616 2.5482 36 1 2.1750 -2.3623 3.5590 37 1 2.3911 -0.6171 3.8345 38 1 0.0122 -0.4288 4.5082 39 1 -0.2039 -2.1739 4.2329 40 1 1.5166 -2.6591 5.9507 41 1 1.7333 -0.9140 6.2267 42 1 -0.7647 -2.1121 10.0261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593958396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:50 Heat of formation + Delta-G solvation = -11.801828 kcal Electronic energy + Delta-G solvation = -19677.176275 eV Core-core repulsion = 16851.331543 eV Total energy + Delta-G solvation = -2825.844732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79799 -37.49013 -35.41681 -33.66779 -32.84328 -31.87057 -29.12160 -28.61161 -26.26309 -24.64721 -22.46873 -21.69270 -21.09953 -19.86436 -19.00414 -16.85882 -16.49951 -16.01260 -15.50945 -14.54345 -14.49507 -14.33023 -14.13944 -13.95911 -13.69236 -12.99364 -12.78184 -12.59871 -12.56056 -12.25338 -11.94882 -11.85998 -11.55117 -11.38868 -11.14233 -11.00506 -10.93518 -10.76955 -10.49358 -10.11502 -9.88206 -9.64872 -9.50780 -9.12483 -8.89481 -8.49096 -8.42540 -5.98732 -3.96259 2.83679 3.03040 3.32656 3.39804 3.42696 4.46155 4.48780 4.50655 4.59530 4.75316 4.91866 5.02779 5.08174 5.17524 5.31358 5.34804 5.39101 5.44314 5.56644 5.62277 5.66615 5.72643 5.74982 5.79911 5.84240 5.93343 6.00663 6.05778 6.21242 6.26060 6.44219 6.60716 6.70711 6.79124 6.96437 7.40452 7.49239 7.57696 7.85329 8.44676 8.61820 9.08157 9.63485 11.15070 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035241 B = 0.004826 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.334805 B = 5800.255655 C = 6463.643329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.145 3.855 3 H 0.066 0.934 4 C -0.132 4.132 5 C -0.119 4.119 6 C -0.130 4.130 7 C 0.145 3.855 8 H 0.072 0.928 9 C -0.198 4.198 10 N -0.624 5.624 11 C 0.521 3.479 12 O -0.524 6.524 13 C -0.164 4.164 14 C -0.094 4.094 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.009 0.991 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.981 2.726 -20.758 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.042 3.958 3 H 0.084 0.916 4 C -0.170 4.170 5 C -0.157 4.157 6 C -0.169 4.169 7 C 0.042 3.958 8 H 0.090 0.910 9 C -0.254 4.254 10 N -0.361 5.361 11 C 0.311 3.689 12 O -0.399 6.399 13 C -0.203 4.203 14 C -0.132 4.132 15 C -0.050 4.050 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.028 0.972 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.279 2.621 -20.692 24.203 hybrid contribution 1.003 -0.079 0.399 1.082 sum 13.282 2.541 -20.293 24.386 Atomic orbital electron populations 1.22199 0.92693 1.03973 1.00995 1.21178 0.95707 0.94636 0.84244 0.91577 1.22014 0.95763 1.01565 0.97657 1.21517 0.95927 1.00363 0.97900 1.21995 1.00926 0.99633 0.94319 1.21093 0.80781 0.98532 0.95399 0.91038 1.23407 1.02435 1.00992 0.98601 1.48306 1.06819 1.60048 1.20922 1.21040 0.85829 0.75375 0.86640 1.90696 1.17826 1.49402 1.82010 1.23195 1.01482 1.04067 0.91569 1.21386 0.95452 1.02024 0.94318 1.19587 0.97088 0.95909 0.92449 1.21177 0.94618 1.48125 0.91662 0.91007 1.25051 0.96810 0.94894 0.96889 1.69924 1.30739 1.50464 1.03326 0.86766 0.85567 0.78427 0.78420 1.20376 1.21468 1.19013 0.90381 0.91483 0.93867 0.91446 0.91128 0.91816 0.91885 0.91414 0.90835 0.91635 0.88807 0.90371 0.87185 0.89118 0.92807 0.91875 0.96675 0.97229 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.63 37.16 0.28 -1.57 16 2 C 0.15 1.65 3.48 -67.60 -0.24 1.42 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -1.21 5.37 -26.61 -0.14 -1.35 16 5 C -0.12 -0.92 5.88 -26.69 -0.16 -1.08 16 6 C -0.13 -1.07 5.34 -26.61 -0.14 -1.21 16 7 C 0.15 1.42 3.44 -67.60 -0.23 1.19 16 8 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 9 C -0.20 -1.94 7.17 37.16 0.27 -1.67 16 10 N -0.62 -7.87 2.97 -157.73 -0.47 -8.34 16 11 C 0.52 8.35 6.82 -10.99 -0.07 8.27 16 12 O -0.52 -10.06 11.84 5.56 0.07 -9.99 16 13 C -0.16 -2.61 3.32 -27.89 -0.09 -2.70 16 14 C -0.09 -1.97 4.59 -26.73 -0.12 -2.09 16 15 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 16 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 17 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -28.55 13.96 55.43 0.77 -27.78 16 20 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 24 H 0.08 1.18 6.72 -51.93 -0.35 0.83 16 25 H 0.07 1.04 6.87 -51.93 -0.36 0.68 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.09 0.99 4.81 -51.93 -0.25 0.74 16 35 H 0.08 0.86 5.49 -51.93 -0.28 0.58 16 36 H 0.11 1.59 4.91 -51.93 -0.26 1.33 16 37 H 0.09 1.29 6.08 -51.92 -0.32 0.97 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.42 7.91 -51.93 -0.41 1.01 16 40 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 41 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -32.82 312.58 -8.00 -40.83 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.22 Total: -1.61 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -1.19 Total: -14.97 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.30 Total: -36.12 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.82 -8.00 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593958396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.025 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds