Wall clock time and date at job start Mon Mar 30 2020 07:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58385 * 2 1 4 4 C 1.53189 * 109.58949 * 239.71568 * 2 1 3 5 5 C 1.53038 * 109.31612 * 185.43465 * 4 2 1 6 6 C 1.53040 * 109.53504 * 61.36350 * 5 4 2 7 7 C 1.53193 * 109.31597 * 298.63465 * 6 5 4 8 8 H 1.08996 * 109.58490 * 294.70788 * 7 6 5 9 9 C 1.53002 * 109.58493 * 174.42059 * 7 6 5 10 10 N 1.46925 * 109.70427 * 120.35265 * 2 1 3 11 11 C 1.34780 * 120.62916 * 353.49327 * 10 2 1 12 12 O 1.21281 * 120.00140 * 20.58054 * 11 10 2 13 13 C 1.50696 * 119.99906 * 200.58305 * 11 10 2 14 14 C 1.52999 * 109.47051 * 162.20093 * 13 11 10 15 15 C 1.53005 * 109.46827 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.46916 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99785 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00341 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00464 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99680 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47296 * 89.99769 * 20 18 16 22 22 H 1.48505 * 109.47385 * 210.00167 * 20 18 16 23 23 H 1.48502 * 109.47269 * 329.99736 * 20 18 16 24 24 H 1.08990 * 109.47489 * 178.34026 * 1 2 3 25 25 H 1.09003 * 109.47008 * 298.34433 * 1 2 3 26 26 H 1.09003 * 109.47213 * 58.34020 * 1 2 3 27 27 H 1.09001 * 109.49838 * 305.39280 * 4 2 1 28 28 H 1.09005 * 109.49847 * 65.48004 * 4 2 1 29 29 H 1.09003 * 109.46173 * 181.37974 * 5 4 2 30 30 H 1.08996 * 109.46045 * 301.34600 * 5 4 2 31 31 H 1.09009 * 109.49950 * 58.58759 * 6 5 4 32 32 H 1.09004 * 109.49844 * 178.64823 * 6 5 4 33 33 H 1.08993 * 109.47224 * 47.52852 * 9 7 6 34 34 H 1.09005 * 109.46209 * 167.52547 * 9 7 6 35 35 H 1.08994 * 109.47158 * 287.52230 * 9 7 6 36 36 H 1.09000 * 109.47271 * 282.20842 * 13 11 10 37 37 H 1.09008 * 109.47075 * 42.20531 * 13 11 10 38 38 H 1.08998 * 109.47214 * 299.99903 * 14 13 11 39 39 H 1.08992 * 109.46992 * 60.00517 * 14 13 11 40 40 H 1.08998 * 109.47175 * 299.99965 * 15 14 13 41 41 H 1.09000 * 109.47464 * 60.00604 * 15 14 13 42 42 H 0.97002 * 120.00238 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5678 -0.8433 -1.1729 6 6 3.9603 -1.6608 0.0600 7 6 3.4685 -0.9435 1.3211 8 1 3.9938 0.0053 1.4302 9 6 3.7338 -1.8206 2.5464 10 7 2.0254 -0.6990 1.1936 11 6 1.1721 -1.1086 2.1532 12 8 -0.0051 -1.2498 1.8978 13 6 1.6807 -1.3909 3.5433 14 6 0.5064 -1.4002 4.5239 15 6 1.0228 -1.6875 5.9353 16 6 -0.1339 -1.6960 6.9013 17 1 -1.1370 -1.5150 6.5442 18 6 0.0883 -1.9358 8.2407 19 7 -0.9211 -1.9437 9.0837 20 14 1.8232 -2.2496 8.8581 21 1 2.4538 -0.9603 9.2391 22 1 1.7731 -3.1450 10.0418 23 1 2.6220 -2.8931 7.7843 24 1 -0.3634 -1.0271 -0.0298 25 1 -0.3633 0.4879 0.9045 26 1 -0.3634 0.5394 -0.8747 27 1 1.6049 -1.7246 -1.2922 28 1 1.7638 -0.1655 -2.1372 29 1 3.9381 -1.3392 -2.0702 30 1 4.0045 0.1528 -1.1021 31 1 3.5036 -2.6489 0.0019 32 1 5.0449 -1.7630 0.0986 33 1 4.7574 -2.1935 2.5115 34 1 3.5925 -1.2312 3.4524 35 1 3.0406 -2.6616 2.5482 36 1 2.1750 -2.3623 3.5590 37 1 2.3911 -0.6171 3.8345 38 1 0.0122 -0.4288 4.5082 39 1 -0.2039 -2.1739 4.2329 40 1 1.5166 -2.6591 5.9507 41 1 1.7333 -0.9140 6.2267 42 1 -0.7647 -2.1121 10.0261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593958396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:49 Heat of formation + Delta-G solvation = -32.329856 kcal Electronic energy + Delta-G solvation = -19678.066437 eV Core-core repulsion = 16851.331543 eV Total energy + Delta-G solvation = -2826.734894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85182 -38.53475 -36.72756 -35.28377 -33.76272 -33.70579 -30.44688 -29.81956 -27.34244 -26.04797 -23.86646 -22.55201 -22.00201 -21.52337 -20.05958 -18.89746 -17.72128 -17.04584 -16.68941 -16.20067 -15.71918 -15.33054 -15.13970 -14.97964 -14.81055 -14.61852 -14.19371 -13.95919 -13.68298 -13.41879 -13.22513 -12.96946 -12.84229 -12.69968 -12.34105 -12.02535 -11.87639 -11.75042 -11.67134 -11.65660 -11.48385 -11.41739 -11.18968 -10.83239 -10.74483 -10.16739 -9.42075 -8.27423 -6.33205 1.38579 1.42532 1.54682 1.61785 2.04469 2.39675 3.07684 3.56728 3.80635 3.85914 3.93774 4.02192 4.10543 4.18957 4.27556 4.32999 4.45713 4.57697 4.65916 4.69807 4.80294 4.82088 4.89247 4.90800 4.99714 5.03236 5.05344 5.08149 5.16719 5.21411 5.24915 5.34219 5.36827 5.51198 5.54571 5.60466 5.68263 5.80574 6.30789 6.51140 6.75279 7.26750 7.31355 8.90400 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035241 B = 0.004826 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.334805 B = 5800.255655 C = 6463.643329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.139 3.861 3 H 0.085 0.915 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.127 4.127 7 C 0.137 3.863 8 H 0.092 0.908 9 C -0.199 4.199 10 N -0.618 5.618 11 C 0.515 3.485 12 O -0.570 6.570 13 C -0.153 4.153 14 C -0.086 4.086 15 C -0.006 4.006 16 C -0.540 4.540 17 H 0.017 0.983 18 C -0.003 4.003 19 N -0.958 5.958 20 Si 0.962 3.038 21 H -0.263 1.263 22 H -0.286 1.286 23 H -0.235 1.235 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.030 0.970 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.029 0.971 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.616 3.001 -22.118 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.037 3.963 3 H 0.103 0.897 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.166 4.166 7 C 0.036 3.964 8 H 0.110 0.890 9 C -0.255 4.255 10 N -0.353 5.353 11 C 0.305 3.695 12 O -0.450 6.450 13 C -0.191 4.191 14 C -0.124 4.124 15 C -0.044 4.044 16 C -0.578 4.578 17 H 0.035 0.965 18 C -0.199 4.199 19 N -0.599 5.599 20 Si 0.784 3.216 21 H -0.188 1.188 22 H -0.212 1.212 23 H -0.158 1.158 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.150 0.850 37 H 0.136 0.864 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.951 2.908 -22.101 28.004 hybrid contribution -0.566 -0.131 0.774 0.968 sum 16.385 2.778 -21.326 27.037 Atomic orbital electron populations 1.22047 0.94618 1.02117 1.00413 1.21364 0.94244 0.95856 0.84828 0.89691 1.21972 0.97134 1.00424 0.96953 1.21528 0.94306 1.01262 0.98285 1.21999 1.02285 0.98682 0.93585 1.21435 0.78742 0.99832 0.96438 0.89008 1.23338 1.03661 1.00281 0.98260 1.48398 1.07935 1.58683 1.20314 1.21075 0.85565 0.75412 0.87400 1.90701 1.19815 1.51726 1.82720 1.23240 0.99265 1.06372 0.90246 1.21185 0.96986 0.99643 0.94615 1.19514 0.95315 0.97138 0.92388 1.21559 0.94293 1.48505 0.93480 0.96463 1.26203 1.02683 0.94174 0.96815 1.70109 1.34060 1.51730 1.03953 0.85496 0.78680 0.79110 0.78358 1.18755 1.21204 1.15784 0.93107 0.94617 0.91560 0.93270 0.89352 0.90372 0.90471 0.92810 0.88295 0.88978 0.89288 0.91968 0.85019 0.86430 0.95127 0.94751 0.95204 0.95229 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 7.63 71.98 0.55 -3.07 16 2 C 0.14 2.95 3.48 44.97 0.16 3.11 16 3 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 4 C -0.13 -2.02 5.37 30.67 0.16 -1.85 16 5 C -0.12 -1.33 5.88 30.62 0.18 -1.15 16 6 C -0.13 -1.60 5.34 30.67 0.16 -1.43 16 7 C 0.14 2.20 3.44 44.98 0.15 2.35 16 8 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 9 C -0.20 -3.16 7.17 71.98 0.52 -2.65 16 10 N -0.62 -14.61 2.97 -771.33 -2.29 -16.90 16 11 C 0.52 16.56 6.82 87.66 0.60 17.16 16 12 O -0.57 -23.19 11.84 -3.03 -0.04 -23.22 16 13 C -0.15 -4.69 3.32 29.85 0.10 -4.59 16 14 C -0.09 -3.72 4.59 30.60 0.14 -3.58 16 15 C -0.01 -0.30 4.04 29.85 0.12 -0.18 16 16 C -0.54 -32.98 9.66 25.60 0.25 -32.73 16 17 H 0.02 1.18 7.99 -2.91 -0.02 1.16 16 18 C 0.00 -0.18 5.47 84.65 0.46 0.29 16 19 N -0.96 -62.40 13.96 21.45 0.30 -62.10 16 20 Si 0.96 44.10 27.47 68.60 1.88 45.99 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.23 -9.58 6.54 99.48 0.65 -8.92 16 24 H 0.05 1.63 6.72 -2.39 -0.02 1.61 16 25 H 0.03 1.16 6.87 -2.39 -0.02 1.14 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 34 H 0.09 1.50 4.81 -2.38 -0.01 1.49 16 35 H 0.06 1.20 5.49 -2.39 -0.01 1.19 16 36 H 0.13 3.52 4.91 -2.39 -0.01 3.51 16 37 H 0.12 3.00 6.08 -2.38 -0.01 2.99 16 38 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.03 1.64 7.91 -2.39 -0.02 1.62 16 40 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 41 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 42 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -76.71 312.58 4.33 -72.38 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.92 Total: 12.19 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 3.55 Total: -28.33 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.99 Total: -79.01 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.04 Total: -23.22 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -76.71 4.33 -72.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593958396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.047 kcal (2) G-P(sol) polarization free energy of solvation -76.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds